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Items: 1 to 50 of 64

1.

Putting advanced microscopy in the hands of biologists.

Power RM, Huisken J.

Nat Methods. 2019 Oct 16. doi: 10.1038/s41592-019-0618-1. [Epub ahead of print] No abstract available.

PMID:
31619775
2.

A conserved regulatory program initiates lateral plate mesoderm emergence across chordates.

Prummel KD, Hess C, Nieuwenhuize S, Parker HJ, Rogers KW, Kozmikova I, Racioppi C, Brombacher EC, Czarkwiani A, Knapp D, Burger S, Chiavacci E, Shah G, Burger A, Huisken J, Yun MH, Christiaen L, Kozmik Z, Müller P, Bronner M, Krumlauf R, Mosimann C.

Nat Commun. 2019 Aug 26;10(1):3857. doi: 10.1038/s41467-019-11561-7.

3.

Cerebrovascular endothelial cells form transient Notch-dependent cystic structures in zebrafish.

Kugler EC, van Lessen M, Daetwyler S, Chhabria K, Savage AM, Silva V, Plant K, MacDonald RB, Huisken J, Wilkinson RN, Schulte-Merker S, Armitage P, Chico TJ.

EMBO Rep. 2019 Aug;20(8):e47047. doi: 10.15252/embr.201847047. Epub 2019 Jun 18.

PMID:
31379129
4.

3Dscript: animating 3D/4D microscopy data using a natural-language-based syntax.

Schmid B, Tripal P, Fraaß T, Kersten C, Ruder B, Grüneboom A, Huisken J, Palmisano R.

Nat Methods. 2019 Apr;16(4):278-280. doi: 10.1038/s41592-019-0359-1. No abstract available.

PMID:
30886414
5.

Loss of the Polycomb group protein Rnf2 results in derepression of tbx-transcription factors and defects in embryonic and cardiac development.

Chrispijn ND, Elurbe DM, Mickoleit M, Aben M, de Bakker DEM, Andralojc KM, Huisken J, Bakkers J, Kamminga LM.

Sci Rep. 2019 Mar 13;9(1):4327. doi: 10.1038/s41598-019-40867-1.

6.

Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish.

Daetwyler S, Günther U, Modes CD, Harrington K, Huisken J.

Development. 2019 Mar 21;146(6). pii: dev173757. doi: 10.1242/dev.173757.

7.

Correction: Neuromesodermal progenitors are a conserved source of spinal cord with divergent growth dynamics (doi: 10.1242/dev.166728).

Attardi A, Fulton T, Florescu M, Shah G, Muresan L, Lenz MO, Lancaster C, Huisken J, van Oudenaarden A, Steventon B.

Development. 2019 Jan 22;146(2). pii: dev175620. doi: 10.1242/dev.175620. No abstract available.

8.

Dynamic and non-contact 3D sample rotation for microscopy.

Berndt F, Shah G, Power RM, Brugués J, Huisken J.

Nat Commun. 2018 Nov 28;9(1):5025. doi: 10.1038/s41467-018-07504-3.

9.

The effect of hyperglycemia on neurovascular coupling and cerebrovascular patterning in zebrafish.

Chhabria K, Plant K, Bandmann O, Wilkinson RN, Martin C, Kugler E, Armitage PA, Santoscoy PL, Cunliffe VT, Huisken J, McGown A, Ramesh T, Chico TJ, Howarth C.

J Cereb Blood Flow Metab. 2018 Nov 6:271678X18810615. doi: 10.1177/0271678X18810615. [Epub ahead of print]

PMID:
30398083
10.

Neuromesodermal progenitors are a conserved source of spinal cord with divergent growth dynamics.

Attardi A, Fulton T, Florescu M, Shah G, Muresan L, Lenz MO, Lancaster C, Huisken J, van Oudenaarden A, Steventon B.

Development. 2018 Nov 9;145(21). pii: dev166728. doi: 10.1242/dev.166728. Erratum in: Development. 2019 Jan 22;146(2):.

11.

Adaptable, illumination patterning light sheet microscopy.

Power RM, Huisken J.

Sci Rep. 2018 Jun 25;8(1):9615. doi: 10.1038/s41598-018-28036-2.

12.

Continuous addition of progenitors forms the cardiac ventricle in zebrafish.

Felker A, Prummel KD, Merks AM, Mickoleit M, Brombacher EC, Huisken J, Panáková D, Mosimann C.

Nat Commun. 2018 May 21;9(1):2001. doi: 10.1038/s41467-018-04402-6.

13.

Cell-accurate optical mapping across the entire developing heart.

Weber M, Scherf N, Meyer AM, Panáková D, Kohl P, Huisken J.

Elife. 2017 Dec 29;6. pii: e28307. doi: 10.7554/eLife.28307.

14.

A guide to light-sheet fluorescence microscopy for multiscale imaging.

Power RM, Huisken J.

Nat Methods. 2017 Mar 31;14(4):360-373. doi: 10.1038/nmeth.4224. Review.

PMID:
28362435
15.

Fast Fluorescence Microscopy with Light Sheets.

Daetwyler S, Huisken J.

Biol Bull. 2016 Aug;231(1):14-25. Review.

PMID:
27638692
16.

Software Framework for Controlling Unsupervised Scientific Instruments.

Schmid B, Jahr W, Weber M, Huisken J.

PLoS One. 2016 Aug 29;11(8):e0161671. doi: 10.1371/journal.pone.0161671. eCollection 2016.

17.

eduSPIM: Light Sheet Microscopy in the Museum.

Jahr W, Schmid B, Weber M, Huisken J.

PLoS One. 2016 Aug 25;11(8):e0161402. doi: 10.1371/journal.pone.0161402. eCollection 2016.

18.

In vivo imaging of cardiac development and function in zebrafish using light sheet microscopy.

Weber M, Huisken J.

Swiss Med Wkly. 2015 Dec 23;145:w14227. doi: 10.4414/smw.2015.14227. eCollection 2015. Review.

19.

Mechanical Coupling between Endoderm Invagination and Axis Extension in Drosophila.

Lye CM, Blanchard GB, Naylor HW, Muresan L, Huisken J, Adams RJ, Sanson B.

PLoS Biol. 2015 Nov 6;13(11):e1002292. doi: 10.1371/journal.pbio.1002292. eCollection 2015.

20.

Hyperspectral light sheet microscopy.

Jahr W, Schmid B, Schmied C, Fahrbach FO, Huisken J.

Nat Commun. 2015 Sep 2;6:7990. doi: 10.1038/ncomms8990.

21.

The smart and gentle microscope.

Scherf N, Huisken J.

Nat Biotechnol. 2015 Aug;33(8):815-8. doi: 10.1038/nbt.3310. No abstract available.

PMID:
26252136
22.

Real-time multi-view deconvolution.

Schmid B, Huisken J.

Bioinformatics. 2015 Oct 15;31(20):3398-400. doi: 10.1093/bioinformatics/btv387. Epub 2015 Jun 25.

23.

Endothelial cell self-fusion during vascular pruning.

Lenard A, Daetwyler S, Betz C, Ellertsdottir E, Belting HG, Huisken J, Affolter M.

PLoS Biol. 2015 Apr 17;13(4):e1002126. doi: 10.1371/journal.pbio.1002126. eCollection 2015 Apr.

24.

Optical tomography complements light sheet microscopy for in toto imaging of zebrafish development.

Bassi A, Schmid B, Huisken J.

Development. 2015 Mar 1;142(5):1016-20. doi: 10.1242/dev.116970.

25.

Regulation of β1 integrin-Klf2-mediated angiogenesis by CCM proteins.

Renz M, Otten C, Faurobert E, Rudolph F, Zhu Y, Boulday G, Duchene J, Mickoleit M, Dietrich AC, Ramspacher C, Steed E, Manet-Dupé S, Benz A, Hassel D, Vermot J, Huisken J, Tournier-Lasserve E, Felbor U, Sure U, Albiges-Rizo C, Abdelilah-Seyfried S.

Dev Cell. 2015 Jan 26;32(2):181-90. doi: 10.1016/j.devcel.2014.12.016.

26.

Guide to light-sheet microscopy for adventurous biologists.

Reynaud EG, Peychl J, Huisken J, Tomancak P.

Nat Methods. 2015 Jan;12(1):30-4. doi: 10.1038/nmeth.3222. No abstract available.

PMID:
25549268
27.

Genome-wide RNA Tomography in the zebrafish embryo.

Junker JP, Noël ES, Guryev V, Peterson KA, Shah G, Huisken J, McMahon AP, Berezikov E, Bakkers J, van Oudenaarden A.

Cell. 2014 Oct 23;159(3):662-75. doi: 10.1016/j.cell.2014.09.038.

28.

High-resolution reconstruction of the beating zebrafish heart.

Mickoleit M, Schmid B, Weber M, Fahrbach FO, Hombach S, Reischauer S, Huisken J.

Nat Methods. 2014 Sep;11(9):919-22. doi: 10.1038/nmeth.3037. Epub 2014 Jul 20.

PMID:
25042787
29.

Light sheet microscopy.

Weber M, Mickoleit M, Huisken J.

Methods Cell Biol. 2014;123:193-215. doi: 10.1016/B978-0-12-420138-5.00011-2.

PMID:
24974029
30.

A configurable and low-power mixed signal SoC for portable ECG monitoring applications.

Kim H, Kim S, Van Helleputte N, Artes A, Konijnenburg M, Huisken J, Van Hoof C, Yazicioglu RF.

IEEE Trans Biomed Circuits Syst. 2014 Apr;8(2):257-67. doi: 10.1109/TBCAS.2013.2260159.

PMID:
24875285
31.

Multilayer mounting for long-term light sheet microscopy of zebrafish.

Weber M, Mickoleit M, Huisken J.

J Vis Exp. 2014 Feb 27;(84):e51119. doi: 10.3791/51119.

32.

Single continuous lumen formation in the zebrafish gut is mediated by smoothened-dependent tissue remodeling.

Alvers AL, Ryan S, Scherz PJ, Huisken J, Bagnat M.

Development. 2014 Mar;141(5):1110-9. doi: 10.1242/dev.100313. Epub 2014 Feb 6.

33.

Rapid 3D light-sheet microscopy with a tunable lens.

Fahrbach FO, Voigt FF, Schmid B, Helmchen F, Huisken J.

Opt Express. 2013 Sep 9;21(18):21010-26. doi: 10.1364/OE.21.021010.

34.

High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics.

Schmid B, Shah G, Scherf N, Weber M, Thierbach K, Campos CP, Roeder I, Aanstad P, Huisken J.

Nat Commun. 2013;4:2207. doi: 10.1038/ncomms3207.

35.

OpenSPIM: an open-access light-sheet microscopy platform.

Pitrone PG, Schindelin J, Stuyvenberg L, Preibisch S, Weber M, Eliceiri KW, Huisken J, Tomancak P.

Nat Methods. 2013 Jul;10(7):598-9. doi: 10.1038/nmeth.2507. Epub 2013 Jun 9. No abstract available.

PMID:
23749304
36.

Transgenic zebrafish illuminate the dynamics of thyroid morphogenesis and its relationship to cardiovascular development.

Opitz R, Maquet E, Huisken J, Antonica F, Trubiroha A, Pottier G, Janssens V, Costagliola S.

Dev Biol. 2012 Dec 15;372(2):203-16. doi: 10.1016/j.ydbio.2012.09.011. Epub 2012 Sep 26.

37.

Multilayer mounting enables long-term imaging of zebrafish development in a light sheet microscope.

Kaufmann A, Mickoleit M, Weber M, Huisken J.

Development. 2012 Sep;139(17):3242-7. doi: 10.1242/dev.082586.

38.

Fibrillin-2b regulates endocardial morphogenesis in zebrafish.

Mellman K, Huisken J, Dinsmore C, Hoppe C, Stainier DY.

Dev Biol. 2012 Dec 1;372(1):111-9. doi: 10.1016/j.ydbio.2012.07.015. Epub 2012 Jul 25.

39.

Omnidirectional microscopy.

Weber M, Huisken J.

Nat Methods. 2012 Jun 28;9(7):656-7. doi: 10.1038/nmeth.2022. No abstract available.

PMID:
22743768
40.

Slicing embryos gently with laser light sheets.

Huisken J.

Bioessays. 2012 May;34(5):406-11. doi: 10.1002/bies.201100120. Epub 2012 Mar 6.

PMID:
22396246
41.

The Popeye domain containing 2 (popdc2) gene in zebrafish is required for heart and skeletal muscle development.

Kirchmaier BC, Poon KL, Schwerte T, Huisken J, Winkler C, Jungblut B, Stainier DY, Brand T.

Dev Biol. 2012 Mar 15;363(2):438-50. doi: 10.1016/j.ydbio.2012.01.015. Epub 2012 Jan 28. Erratum in: Dev Biol. 2012 Jun 15;366(2):433.

42.

An ultra low energy biomedical signal processing system operating at near-threshold.

Hulzink J, Konijnenburg M, Ashouei M, Breeschoten A, Berset T, Huisken J, Stuyt J, de Groot H, Barat F, David J, Van Ginderdeuren J.

IEEE Trans Biomed Circuits Syst. 2011 Dec;5(6):546-54. doi: 10.1109/TBCAS.2011.2176726.

PMID:
23852552
43.

A 2.4 GHz ULP OOK Single-Chip Transceiver for Healthcare Applications.

Vidojkovic M, Huang X, Harpe P, Rampu S, Zhou C, Huang L, van de Molengraft J, Imamura K, Busze B, Bouwens F, Konijnenburg M, Santana J, Breeschoten A, Huisken J, Philips K, Dolmans G, de Groot H.

IEEE Trans Biomed Circuits Syst. 2011 Dec;5(6):523-34. doi: 10.1109/TBCAS.2011.2173340.

PMID:
23852550
44.

Light sheet microscopy for real-time developmental biology.

Weber M, Huisken J.

Curr Opin Genet Dev. 2011 Oct;21(5):566-72. doi: 10.1016/j.gde.2011.09.009. Epub 2011 Sep 30. Review.

PMID:
21963791
45.

A lightweight security scheme for wireless body area networks: design, energy evaluation and proposed microprocessor design.

Selimis G, Huang L, Massé F, Tsekoura I, Ashouei M, Catthoor F, Huisken J, Stuyt J, Dolmans G, Penders J, De Groot H.

J Med Syst. 2011 Oct;35(5):1289-98. doi: 10.1007/s10916-011-9669-2. Epub 2011 Mar 5.

PMID:
21373804
46.

Optogenetic control of cardiac function.

Arrenberg AB, Stainier DY, Baier H, Huisken J.

Science. 2010 Nov 12;330(6006):971-4. doi: 10.1126/science.1195929.

47.

A dual role for ErbB2 signaling in cardiac trabeculation.

Liu J, Bressan M, Hassel D, Huisken J, Staudt D, Kikuchi K, Poss KD, Mikawa T, Stainier DY.

Development. 2010 Nov;137(22):3867-75. doi: 10.1242/dev.053736.

48.

Cse1l is a negative regulator of CFTR-dependent fluid secretion.

Bagnat M, Navis A, Herbstreith S, Brand-Arzamendi K, Curado S, Gabriel S, Mostov K, Huisken J, Stainier DY.

Curr Biol. 2010 Oct 26;20(20):1840-5. doi: 10.1016/j.cub.2010.09.012. Epub 2010 Oct 7. Erratum in: Curr Biol. 2010 Dec 7;20(23):2157.

49.

Arterial-venous segregation by selective cell sprouting: an alternative mode of blood vessel formation.

Herbert SP, Huisken J, Kim TN, Feldman ME, Houseman BT, Wang RA, Shokat KM, Stainier DY.

Science. 2009 Oct 9;326(5950):294-8. doi: 10.1126/science.1178577.

50.

Selective plane illumination microscopy techniques in developmental biology.

Huisken J, Stainier DY.

Development. 2009 Jun;136(12):1963-75. doi: 10.1242/dev.022426. Review.

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