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Items: 17


Effects of sampling strategy and DNA extraction on human skin microbiome investigations.

Bjerre RD, Hugerth LW, Boulund F, Seifert M, Johansen JD, Engstrand L.

Sci Rep. 2019 Nov 21;9(1):17287. doi: 10.1038/s41598-019-53599-z.


No distinct microbiome signature of irritable bowel syndrome found in a Swedish random population.

Hugerth LW, Andreasson A, Talley NJ, Forsberg AM, Kjellström L, Schmidt PT, Agreus L, Engstrand L.

Gut. 2019 Oct 10. pii: gutjnl-2019-318717. doi: 10.1136/gutjnl-2019-318717. [Epub ahead of print]


Mucosal-associated invariant T cells and oral microbiome in persistent apical periodontitis.

Davanian H, Gaiser RA, Silfverberg M, Hugerth LW, Sobkowiak MJ, Lu L, Healy K, Sandberg JK, Näsman P, Karlsson J, Jansson L, Engstrand L, Sällberg Chen M.

Int J Oral Sci. 2019 May 9;11(2):16. doi: 10.1038/s41368-019-0049-y.


Enrichment of oral microbiota in early cystic precursors to invasive pancreatic cancer.

Gaiser RA, Halimi A, Alkharaan H, Lu L, Davanian H, Healy K, Hugerth LW, Ateeb Z, Valente R, Fernández Moro C, Del Chiaro M, Sällberg Chen M.

Gut. 2019 Dec;68(12):2186-2194. doi: 10.1136/gutjnl-2018-317458. Epub 2019 Mar 14.


Investigation of the skin microbiome: swabs vs. biopsies.

Prast-Nielsen S, Tobin AM, Adamzik K, Powles A, Hugerth LW, Sweeney C, Kirby B, Engstrand L, Fry L.

Br J Dermatol. 2019 Sep;181(3):572-579. doi: 10.1111/bjd.17691. Epub 2019 May 6.


Colitis-induced colorectal cancer and intestinal epithelial estrogen receptor beta impact gut microbiota diversity.

Ibrahim A, Hugerth LW, Hases L, Saxena A, Seifert M, Thomas Q, Gustafsson JÅ, Engstrand L, Williams C.

Int J Cancer. 2019 Jun 15;144(12):3086-3098. doi: 10.1002/ijc.32037. Epub 2019 Jan 11.


Bacteriophages Synergize with the Gut Microbial Community To Combat Salmonella.

Hu YOO, Hugerth LW, Bengtsson C, Alisjahbana A, Seifert M, Kamal A, Sjöling Å, Midtvedt T, Norin E, Du J, Engstrand L.

mSystems. 2018 Oct 2;3(5). pii: e00119-18. doi: 10.1128/mSystems.00119-18. eCollection 2018 Sep-Oct.


Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes.

Alneberg J, Karlsson CMG, Divne AM, Bergin C, Homa F, Lindh MV, Hugerth LW, Ettema TJG, Bertilsson S, Andersson AF, Pinhassi J.

Microbiome. 2018 Sep 28;6(1):173. doi: 10.1186/s40168-018-0550-0.


BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea.

Alneberg J, Sundh J, Bennke C, Beier S, Lundin D, Hugerth LW, Pinhassi J, Kisand V, Riemann L, Jürgens K, Labrenz M, Andersson AF.

Sci Data. 2018 Jul 31;5:180146. doi: 10.1038/sdata.2018.146.


Multiscale patterns and drivers of arbuscular mycorrhizal fungal communities in the roots and root-associated soil of a wild perennial herb.

Rasmussen PU, Hugerth LW, Blanchet FG, Andersson AF, Lindahl BD, Tack AJM.

New Phytol. 2018 Dec;220(4):1248-1261. doi: 10.1111/nph.15088. Epub 2018 Mar 24.


Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing.

Hugerth LW, Andersson AF.

Front Microbiol. 2017 Sep 4;8:1561. doi: 10.3389/fmicb.2017.01561. eCollection 2017. Review.


Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life.

Wampach L, Heintz-Buschart A, Hogan A, Muller EEL, Narayanasamy S, Laczny CC, Hugerth LW, Bindl L, Bottu J, Andersson AF, de Beaufort C, Wilmes P.

Front Microbiol. 2017 May 2;8:738. doi: 10.3389/fmicb.2017.00738. eCollection 2017.


Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers.

Lindh MV, Sjöstedt J, Ekstam B, Casini M, Lundin D, Hugerth LW, Hu YO, Andersson AF, Andersson A, Legrand C, Pinhassi J.

Environ Microbiol. 2017 Mar;19(3):1222-1236. doi: 10.1111/1462-2920.13650. Epub 2017 Feb 6.


Metagenome-assembled genomes uncover a global brackish microbiome.

Hugerth LW, Larsson J, Alneberg J, Lindh MV, Legrand C, Pinhassi J, Andersson AF.

Genome Biol. 2015 Dec 14;16:279. doi: 10.1186/s13059-015-0834-7.


Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling.

Lindh MV, Sjöstedt J, Andersson AF, Baltar F, Hugerth LW, Lundin D, Muthusamy S, Legrand C, Pinhassi J.

Environ Microbiol. 2015 Jul;17(7):2459-76. doi: 10.1111/1462-2920.12720. Epub 2015 Jan 27.


DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies.

Hugerth LW, Wefer HA, Lundin S, Jakobsson HE, Lindberg M, Rodin S, Engstrand L, Andersson AF.

Appl Environ Microbiol. 2014 Aug;80(16):5116-23. doi: 10.1128/AEM.01403-14. Epub 2014 Jun 13.


Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia.

Hugerth LW, Muller EE, Hu YO, Lebrun LA, Roume H, Lundin D, Wilmes P, Andersson AF.

PLoS One. 2014 Apr 22;9(4):e95567. doi: 10.1371/journal.pone.0095567. eCollection 2014. Erratum in: PLoS One. 2015;10(1):e0117636.

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