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Items: 29


Parallelism and convergence in post-domestication adaptation in cereal grasses.

Woodhouse MR, Hufford MB.

Philos Trans R Soc Lond B Biol Sci. 2019 Jul 22;374(1777):20180245. doi: 10.1098/rstb.2018.0245. Epub 2019 Jun 3.


Characterization of introgression from the teosinte Zea mays ssp. mexicana to Mexican highland maize.

Gonzalez-Segovia E, Pérez-Limon S, Cíntora-Martínez GC, Guerrero-Zavala A, Janzen GM, Hufford MB, Ross-Ibarra J, Sawers RJH.

PeerJ. 2019 May 3;7:e6815. doi: 10.7717/peerj.6815. eCollection 2019.


Crop Biodiversity: An Unfinished Magnum Opus of Nature.

Hufford MB, Berny Mier Y Teran JC, Gepts P.

Annu Rev Plant Biol. 2019 Apr 29;70:727-751. doi: 10.1146/annurev-arplant-042817-040240.


The extent of adaptive wild introgression in crops.

Janzen GM, Wang L, Hufford MB.

New Phytol. 2019 Feb;221(3):1279-1288. doi: 10.1111/nph.15457. Epub 2018 Oct 8.


Evidence for a Unique DNA-Dependent RNA Polymerase in Cereal Crops.

Trujillo JT, Seetharam AS, Hufford MB, Beilstein MA, Mosher RA.

Mol Biol Evol. 2018 Oct 1;35(10):2454-2462. doi: 10.1093/molbev/msy146.


Domestication Genomics: Untangling the Complex History of African Rice.

Snodgrass SJ, Hufford MB.

Curr Biol. 2018 Jul 23;28(14):R786-R788. doi: 10.1016/j.cub.2018.05.072.


The interplay of demography and selection during maize domestication and expansion.

Wang L, Beissinger TM, Lorant A, Ross-Ibarra C, Ross-Ibarra J, Hufford MB.

Genome Biol. 2017 Nov 13;18(1):215. doi: 10.1186/s13059-017-1346-4.


The potential role of genetic assimilation during maize domestication.

Lorant A, Pedersen S, Holst I, Hufford MB, Winter K, Piperno D, Ross-Ibarra J.

PLoS One. 2017 Sep 8;12(9):e0184202. doi: 10.1371/journal.pone.0184202. eCollection 2017.


Genomic abundance is not predictive of tandem repeat localization in grass genomes.

Bilinski P, Han Y, Hufford MB, Lorant A, Zhang P, Estep MC, Jiang J, Ross-Ibarra J.

PLoS One. 2017 Jun 1;12(6):e0177896. doi: 10.1371/journal.pone.0177896. eCollection 2017.


Crop Domestication: A Sneak-Peek into the Midpoint of Maize Evolution.

Janzen GM, Hufford MB.

Curr Biol. 2016 Dec 5;26(23):R1240-R1242. doi: 10.1016/j.cub.2016.10.045.


Comparative genomics provides insight into maize adaptation in temperate regions.

Hufford MB.

Genome Biol. 2016 Jul 13;17(1):155. doi: 10.1186/s13059-016-1020-2.


Recent demography drives changes in linked selection across the maize genome.

Beissinger TM, Wang L, Crosby K, Durvasula A, Hufford MB, Ross-Ibarra J.

Nat Plants. 2016 Jun 13;2:16084. doi: 10.1038/nplants.2016.84.


Climate structures genetic variation across a species' elevation range: a test of range limits hypotheses.

Sexton JP, Hufford MB, Bateman AC, Lowry DB, Meimberg H, Strauss SY, Rice KJ.

Mol Ecol. 2016 Feb;25(4):911-28. doi: 10.1111/mec.13528. Epub 2016 Feb 9.


Independent Molecular Basis of Convergent Highland Adaptation in Maize.

Takuno S, Ralph P, Swarts K, Elshire RJ, Glaubitz JC, Buckler ES, Hufford MB, Ross-Ibarra J.

Genetics. 2015 Aug;200(4):1297-312. doi: 10.1534/genetics.115.178327. Epub 2015 Jun 15.


Natural variation in teosinte at the domestication locus teosinte branched1 (tb1).

Vann L, Kono T, Pyhäjärvi T, Hufford MB, Ross-Ibarra J.

PeerJ. 2015 Apr 16;3:e900. doi: 10.7717/peerj.900. eCollection 2015.


The origin and evolution of maize in the Southwestern United States.

da Fonseca RR, Smith BD, Wales N, Cappellini E, Skoglund P, Fumagalli M, Samaniego JA, Carøe C, Ávila-Arcos MC, Hufnagel DE, Korneliussen TS, Vieira FG, Jakobsson M, Arriaza B, Willerslev E, Nielsen R, Hufford MB, Albrechtsen A, Ross-Ibarra J, Gilbert MT.

Nat Plants. 2015 Jan 8;1:14003. doi: 10.1038/nplants.2014.3.


Complex patterns of local adaptation in teosinte.

Pyhäjärvi T, Hufford MB, Mezmouk S, Ross-Ibarra J.

Genome Biol Evol. 2013;5(9):1594-609. doi: 10.1093/gbe/evt109.


The genomic signature of crop-wild introgression in maize.

Hufford MB, Lubinksy P, Pyhäjärvi T, Devengenzo MT, Ellstrand NC, Ross-Ibarra J.

PLoS Genet. 2013 May;9(5):e1003477. doi: 10.1371/journal.pgen.1003477. Epub 2013 May 9.


Diversity and abundance of the abnormal chromosome 10 meiotic drive complex in Zea mays.

Kanizay LB, Pyhäjärvi T, Lowry EG, Hufford MB, Peterson DG, Ross-Ibarra J, Dawe RK.

Heredity (Edinb). 2013 Jun;110(6):570-7. doi: 10.1038/hdy.2013.2. Epub 2013 Feb 27.


Inferences from the historical distribution of wild and domesticated maize provide ecological and evolutionary insight.

Hufford MB, Martínez-Meyer E, Gaut BS, Eguiarte LE, Tenaillon MI.

PLoS One. 2012;7(11):e47659. doi: 10.1371/journal.pone.0047659. Epub 2012 Nov 14.


Teosinte as a model system for population and ecological genomics.

Hufford MB, Bilinski P, Pyhäjärvi T, Ross-Ibarra J.

Trends Genet. 2012 Dec;28(12):606-15. doi: 10.1016/j.tig.2012.08.004. Epub 2012 Sep 27. Review.


Historical genomics of North American maize.

van Heerwaarden J, Hufford MB, Ross-Ibarra J.

Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12420-5. doi: 10.1073/pnas.1209275109. Epub 2012 Jul 16.


Reshaping of the maize transcriptome by domestication.

Swanson-Wagner R, Briskine R, Schaefer R, Hufford MB, Ross-Ibarra J, Myers CL, Tiffin P, Springer NM.

Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11878-83. doi: 10.1073/pnas.1201961109. Epub 2012 Jul 2.


Comparative population genomics of maize domestication and improvement.

Hufford MB, Xu X, van Heerwaarden J, Pyhäjärvi T, Chia JM, Cartwright RA, Elshire RJ, Glaubitz JC, Guill KE, Kaeppler SM, Lai J, Morrell PL, Shannon LM, Song C, Springer NM, Swanson-Wagner RA, Tiffin P, Wang J, Zhang G, Doebley J, McMullen MD, Ware D, Buckler ES, Yang S, Ross-Ibarra J.

Nat Genet. 2012 Jun 3;44(7):808-11. doi: 10.1038/ng.2309.


Maize HapMap2 identifies extant variation from a genome in flux.

Chia JM, Song C, Bradbury PJ, Costich D, de Leon N, Doebley J, Elshire RJ, Gaut B, Geller L, Glaubitz JC, Gore M, Guill KE, Holland J, Hufford MB, Lai J, Li M, Liu X, Lu Y, McCombie R, Nelson R, Poland J, Prasanna BM, Pyhäjärvi T, Rong T, Sekhon RS, Sun Q, Tenaillon MI, Tian F, Wang J, Xu X, Zhang Z, Kaeppler SM, Ross-Ibarra J, McMullen MD, Buckler ES, Zhang G, Xu Y, Ware D.

Nat Genet. 2012 Jun 3;44(7):803-7. doi: 10.1038/ng.2313.


Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians.

Tenaillon MI, Hufford MB, Gaut BS, Ross-Ibarra J.

Genome Biol Evol. 2011;3:219-29. doi: 10.1093/gbe/evr008. Epub 2011 Feb 4.


Influence of cryptic population structure on observed mating patterns in the wild progenitor of maize (Zea mays ssp. parviglumis).

Hufford MB, Gepts P, Ross-Ibarra J.

Mol Ecol. 2011 Jan;20(1):46-55. doi: 10.1111/j.1365-294X.2010.04924.x. Epub 2010 Nov 11.


Transgenes in Mexican maize: molecular evidence and methodological considerations for GMO detection in landrace populations.

Piñeyro-Nelson A, Van Heerwaarden J, Perales HR, Serratos-Hernández JA, Rangel A, Hufford MB, Gepts P, Garay-Arroyo A, Rivera-Bustamante R, Alvarez-Buylla ER.

Mol Ecol. 2009 Feb;18(4):750-61. doi: 10.1111/j.1365-294X.2008.03993.x. Epub 2008 Dec 18.


Long-distance pollen flow assessment through evaluation of pollinator foraging range suggests transgene escape distances.

Pasquet RS, Peltier A, Hufford MB, Oudin E, Saulnier J, Paul L, Knudsen JT, Herren HR, Gepts P.

Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13456-61. doi: 10.1073/pnas.0806040105. Epub 2008 Sep 3.

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