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Items: 1 to 50 of 76

1.

A population genetic interpretation of GWAS findings for human quantitative traits.

Simons YB, Bullaughey K, Hudson RR, Sella G.

PLoS Biol. 2018 Mar 16;16(3):e2002985. doi: 10.1371/journal.pbio.2002985. eCollection 2018 Mar.

2.

Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution.

Ling S, Hu Z, Yang Z, Yang F, Li Y, Lin P, Chen K, Dong L, Cao L, Tao Y, Hao L, Chen Q, Gong Q, Wu D, Li W, Zhao W, Tian X, Hao C, Hungate EA, Catenacci DV, Hudson RR, Li WH, Lu X, Wu CI.

Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):E6496-505. doi: 10.1073/pnas.1519556112. Epub 2015 Nov 11. Erratum in: Proc Natl Acad Sci U S A. 2016 Feb 2;113(5):E663.

3.

Estimating the Ages of Selection Signals from Different Epochs in Human History.

Nakagome S, Alkorta-Aranburu G, Amato R, Howie B, Peter BM, Hudson RR, Di Rienzo A.

Mol Biol Evol. 2016 Mar;33(3):657-69. doi: 10.1093/molbev/msv256. Epub 2015 Nov 5.

4.

A New Proof of the Expected Frequency Spectrum under the Standard Neutral Model.

Hudson RR.

PLoS One. 2015 Jul 21;10(7):e0118087. doi: 10.1371/journal.pone.0118087. eCollection 2015.

5.

The long-term maintenance of a resistance polymorphism through diffuse interactions.

Karasov TL, Kniskern JM, Gao L, DeYoung BJ, Ding J, Dubiella U, Lastra RO, Nallu S, Roux F, Innes RW, Barrett LG, Hudson RR, Bergelson J.

Nature. 2014 Aug 28;512(7515):436-440. doi: 10.1038/nature13439. Epub 2014 Jul 6.

6.

A genetic polymorphism evolving in parallel in two cell compartments and in two clades.

Watt WB, Hudson RR, Wang B, Wang E.

BMC Evol Biol. 2013 Jan 12;13:9. doi: 10.1186/1471-2148-13-9.

7.

Evaluating the evidence for transmission distortion in human pedigrees.

Meyer WK, Arbeithuber B, Ober C, Ebner T, Tiemann-Boege I, Hudson RR, Przeworski M.

Genetics. 2012 May;191(1):215-32. doi: 10.1534/genetics.112.139576. Epub 2012 Feb 29.

8.

Two evolutionary histories in the genome of rice: the roles of domestication genes.

He Z, Zhai W, Wen H, Tang T, Wang Y, Lu X, Greenberg AJ, Hudson RR, Wu CI, Shi S.

PLoS Genet. 2011 Jun;7(6):e1002100. doi: 10.1371/journal.pgen.1002100. Epub 2011 Jun 9.

9.

Human endogenous retrovirus K106 (HERV-K106) was infectious after the emergence of anatomically modern humans.

Jha AR, Nixon DF, Rosenberg MG, Martin JN, Deeks SG, Hudson RR, Garrison KE, Pillai SK.

PLoS One. 2011;6(5):e20234. doi: 10.1371/journal.pone.0020234. Epub 2011 May 25.

10.

A reduced representation approach to population genetic analyses and applications to human evolution.

Luca F, Hudson RR, Witonsky DB, Di Rienzo A.

Genome Res. 2011 Jul;21(7):1087-98. doi: 10.1101/gr.119792.110. Epub 2011 May 31.

11.

Estimating the recombination parameter of a finite population model without selection.

Hudson RR.

Genet Res. 2007 Dec;89(5-6):427-32. doi: 10.1017/S0016672308009610. No abstract available.

PMID:
18976531
12.

The variance of coalescent time estimates from DNA sequences.

Hudson RR.

J Mol Evol. 2007 Jun;64(6):702-5. Epub 2007 May 8.

PMID:
17487522
13.

Adaptive genic evolution in the Drosophila genomes.

Shapiro JA, Huang W, Zhang C, Hubisz MJ, Lu J, Turissini DA, Fang S, Wang HY, Hudson RR, Nielsen R, Chen Z, Wu CI.

Proc Natl Acad Sci U S A. 2007 Feb 13;104(7):2271-6. Epub 2007 Feb 6.

14.

Evidence that the adaptive allele of the brain size gene microcephalin introgressed into Homo sapiens from an archaic Homo lineage.

Evans PD, Mekel-Bobrov N, Vallender EJ, Hudson RR, Lahn BT.

Proc Natl Acad Sci U S A. 2006 Nov 28;103(48):18178-83. Epub 2006 Nov 7.

15.

Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes.

Voight BF, Adams AM, Frisse LA, Qian Y, Hudson RR, Di Rienzo A.

Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18508-13. Epub 2005 Dec 13.

16.

An evolutionary framework for common diseases: the ancestral-susceptibility model.

Di Rienzo A, Hudson RR.

Trends Genet. 2005 Nov;21(11):596-601. Epub 2005 Sep 8. Review.

PMID:
16153740
17.

Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens.

Mekel-Bobrov N, Gilbert SL, Evans PD, Vallender EJ, Anderson JR, Hudson RR, Tishkoff SA, Lahn BT.

Science. 2005 Sep 9;309(5741):1720-2.

18.

Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans.

Evans PD, Gilbert SL, Mekel-Bobrov N, Vallender EJ, Anderson JR, Vaez-Azizi LM, Tishkoff SA, Hudson RR, Lahn BT.

Science. 2005 Sep 9;309(5741):1717-20.

19.

Population genetics of CAPN10 and GPR35: implications for the evolution of type 2 diabetes variants.

Vander Molen J, Frisse LM, Fullerton SM, Qian Y, Del Bosque-Plata L, Hudson RR, Di Rienzo A.

Am J Hum Genet. 2005 Apr;76(4):548-60. Epub 2005 Feb 4.

21.

Comparative linkage-disequilibrium analysis of the beta-globin hotspot in primates.

Wall JD, Frisse LA, Hudson RR, Di Rienzo A.

Am J Hum Genet. 2003 Dec;73(6):1330-40. Epub 2003 Nov 18.

23.

Mathematical consequences of the genealogical species concept.

Hudson RR, Coyne JA.

Evolution. 2002 Aug;56(8):1557-65.

PMID:
12353748
24.

Inferences about human demography based on multilocus analyses of noncoding sequences.

Pluzhnikov A, Di Rienzo A, Hudson RR.

Genetics. 2002 Jul;161(3):1209-18.

25.
26.

Geographic and haplotype structure of candidate type 2 diabetes susceptibility variants at the calpain-10 locus.

Fullerton SM, Bartoszewicz A, Ybazeta G, Horikawa Y, Bell GI, Kidd KK, Cox NJ, Hudson RR, Di Rienzo A.

Am J Hum Genet. 2002 May;70(5):1096-106. Epub 2002 Mar 12.

27.

Generating samples under a Wright-Fisher neutral model of genetic variation.

Hudson RR.

Bioinformatics. 2002 Feb;18(2):337-8.

PMID:
11847089
28.

Two-locus sampling distributions and their application.

Hudson RR.

Genetics. 2001 Dec;159(4):1805-17.

29.

Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels.

Frisse L, Hudson RR, Bartoszewicz A, Wall JD, Donfack J, Di Rienzo A.

Am J Hum Genet. 2001 Oct;69(4):831-43. Epub 2001 Aug 29.

30.

Coalescent simulations and statistical tests of neutrality.

Wall JD, Hudson RR.

Mol Biol Evol. 2001 Jun;18(6):1134-5; author reply 1136-8. No abstract available.

PMID:
11371601
31.

LIAN 3.0: detecting linkage disequilibrium in multilocus data. Linkage Analysis.

Haubold B, Hudson RR.

Bioinformatics. 2000 Sep;16(9):847-8.

PMID:
11108709
32.

A new statistic for detecting genetic differentiation.

Hudson RR.

Genetics. 2000 Aug;155(4):2011-4.

33.

Adjusting the focus on human variation.

Przeworski M, Hudson RR, Di Rienzo A.

Trends Genet. 2000 Jul;16(7):296-302. Review.

PMID:
10858659
34.

ATP enhances repair of hair bundles in sea anemones.

Watson GM, Venable S, Hudson RR, Repass JJ.

Hear Res. 1999 Oct;136(1-2):1-12.

PMID:
10511619
35.

Detecting linkage disequilibrium in bacterial populations.

Haubold B, Travisano M, Rainey PB, Hudson RR.

Genetics. 1998 Dec;150(4):1341-8.

36.

Frequency specificity of vibration dependent discharge of nematocysts in sea anemones.

Watson GM, Mire P, Hudson RR.

J Exp Zool. 1998 Aug 15;281(6):582-93.

PMID:
9697323
37.

Malaria's Eve: evidence of a recent population bottleneck throughout the world populations of Plasmodium falciparum.

Rich SM, Licht MC, Hudson RR, Ayala FJ.

Proc Natl Acad Sci U S A. 1998 Apr 14;95(8):4425-30.

38.

Repair of hair bundles in sea anemones by secreted proteins.

Watson GM, Mire P, Hudson RR.

Hear Res. 1998 Jan;115(1-2):119-28.

PMID:
9472741
39.

Plasmodium falciparum antigenic diversity: evidence of clonal population structure.

Rich SM, Hudson RR, Ayala FJ.

Proc Natl Acad Sci U S A. 1997 Nov 25;94(24):13040-5.

40.

Genetic tagging of humpback whales.

Palsbøll PJ, Allen J, Bérubé M, Clapham PJ, Feddersen TP, Hammond PS, Hudson RR, Jørgensen H, Katona S, Larsen AH, Larsen F, Lien J, Mattila DK, Sigurjónsson J, Sears R, Smith T, Sponer R, Stevick P, Oien N.

Nature. 1997 Aug 21;388(6644):767-9.

PMID:
9285587
41.
42.

DNA variation at the Sod locus of Drosophila melanogaster: an unfolding story of natural selection.

Hudson RR, Sáez AG, Ayala FJ.

Proc Natl Acad Sci U S A. 1997 Jul 22;94(15):7725-9.

43.

Hair bundles of sea anemones as a model system for vertebrate hair bundles.

Watson GM, Mire P, Hudson RR.

Hear Res. 1997 May;107(1-2):53-66.

PMID:
9165347
44.

Deleterious background selection with recombination.

Hudson RR, Kaplan NL.

Genetics. 1995 Dec;141(4):1605-17.

45.

The coalescent process and background selection.

Hudson RR, Kaplan NL.

Philos Trans R Soc Lond B Biol Sci. 1995 Jul 29;349(1327):19-23.

PMID:
8748015
46.

The hitchhiking effect on the site frequency spectrum of DNA polymorphisms.

Braverman JM, Hudson RR, Kaplan NL, Langley CH, Stephan W.

Genetics. 1995 Jun;140(2):783-96.

47.
48.

Evidence for positive selection in the superoxide dismutase (Sod) region of Drosophila melanogaster.

Hudson RR, Bailey K, Skarecky D, Kwiatowski J, Ayala FJ.

Genetics. 1994 Apr;136(4):1329-40.

49.

Levels of DNA polymorphism and divergence yield important insights into evolutionary processes.

Hudson RR.

Proc Natl Acad Sci U S A. 1993 Aug 15;90(16):7425-6. Review. No abstract available.

50.

Estimation of levels of gene flow from DNA sequence data.

Hudson RR, Slatkin M, Maddison WP.

Genetics. 1992 Oct;132(2):583-9.

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