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Association analysis of loci implied in "buffering" epistasis.

Reverter A, Vitezica ZG, Naval-Sánchez M, Henshall J, Raidan FSS, Li Y, Meyer K, Hudson NJ, Porto-Neto LR, Legarra A.

J Anim Sci. 2020 Mar 1;98(3). pii: skaa045. doi: 10.1093/jas/skaa045.


Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle.

Hudson NJ, Reverter A, Griffiths WJ, Yutuc E, Wang Y, Jeanes A, McWilliam S, Pethick DW, Greenwood PL.

BMC Genomics. 2020 Jan 28;21(1):77. doi: 10.1186/s12864-020-6505-4.


Visual Opsin Diversity in Sharks and Rays.

Hart NS, Lamb TD, Patel HR, Chuah A, Natoli RC, Hudson NJ, Cutmore SC, Davies WIL, Collin SP, Hunt DM.

Mol Biol Evol. 2020 Mar 1;37(3):811-827. doi: 10.1093/molbev/msz269.


MicroRNA profiling associated with muscle growth in modern broilers compared to an unselected chicken breed.

Khatri B, Seo D, Shouse S, Pan JH, Hudson NJ, Kim JK, Bottje W, Kong BC.

BMC Genomics. 2018 Sep 17;19(1):683. doi: 10.1186/s12864-018-5061-7.


RAPID COMMUNICATION: A haplotype information theory method reveals genes of evolutionary interest in European vs. Asian pigs.

Hudson NJ, Naval-Sánchez M, Porto-Neto L, Pérez-Enciso M, Reverter A.

J Anim Sci. 2018 Jul 28;96(8):3064-3069. doi: 10.1093/jas/sky225.


Molecular regulation of high muscle mass in developing Blonde d'Aquitaine cattle foetuses.

Cassar-Malek I, Boby C, Picard B, Reverter A, Hudson NJ.

Biol Open. 2017 Oct 15;6(10):1483-1492. doi: 10.1242/bio.024950.


Data compression can discriminate broilers by selection line, detect haplotypes, and estimate genetic potential for complex phenotypes.

Hudson NJ, Hawken RJ, Okimoto R, Sapp RL, Reverter A.

Poult Sci. 2017 Sep 1;96(9):3031-3038. doi: 10.3382/ps/pex151.


Proteogenomics Reveals Enriched Ribosome Assembly and Protein Translation in Pectoralis major of High Feed Efficiency Pedigree Broiler Males.

Bottje WG, Lassiter K, Piekarski-Welsher A, Dridi S, Reverter A, Hudson NJ, Kong BW.

Front Physiol. 2017 May 16;8:306. doi: 10.3389/fphys.2017.00306. eCollection 2017.


A Pathway-Centered Analysis of Pig Domestication and Breeding in Eurasia.

Leno-Colorado J, Hudson NJ, Reverter A, Pérez-Enciso M.

G3 (Bethesda). 2017 Jul 5;7(7):2171-2184. doi: 10.1534/g3.117.042671.


Progesterone signalling in broiler skeletal muscle is associated with divergent feed efficiency.

Bottje W, Kong BW, Reverter A, Waardenberg AJ, Lassiter K, Hudson NJ.

BMC Syst Biol. 2017 Feb 24;11(1):29. doi: 10.1186/s12918-017-0396-2.


Chicken muscle mitochondrial content appears co-ordinately regulated and is associated with performance phenotypes.

Reverter A, Okimoto R, Sapp R, Bottje WG, Hawken R, Hudson NJ.

Biol Open. 2017 Jan 15;6(1):50-58. doi: 10.1242/bio.022772.


Correction: Proteomics of Breast Muscle Tissue Associated with the Phenotypic Expression of Feed Efficiency within a Pedigree Male Broiler Line: I. Highlight on Mitochondria.

Kong BW, Lassiter K, Piekarski-Welsher A, Dridi S, Reverter A, Hudson NJ, Bottje WG.

PLoS One. 2016 Jul 19;11(7):e0159897. doi: 10.1371/journal.pone.0159897. eCollection 2016.


Proteomics of Breast Muscle Tissue Associated with the Phenotypic Expression of Feed Efficiency within a Pedigree Male Broiler Line: I. Highlight on Mitochondria.

Kong BW, Lassiter K, Piekarski-Welsher A, Dridi S, Reverter-Gomez A, Hudson NJ, Bottje WG.

PLoS One. 2016 May 31;11(5):e0155679. doi: 10.1371/journal.pone.0155679. eCollection 2016. Erratum in: PLoS One. 2016;11(7):e0159897.


Disorder of endoplasmic reticulum calcium channel components is associated with the increased apoptotic potential in pale, soft, exudative pork.

Guo B, Zhang W, Tume RK, Hudson NJ, Huang F, Yin Y, Zhou G.

Meat Sci. 2016 May;115:34-40. doi: 10.1016/j.meatsci.2016.01.003. Epub 2016 Jan 11.


Compression distance can discriminate animals by genetic profile, build relationship matrices and estimate breeding values.

Hudson NJ, Porto-Neto L, Kijas JW, Reverter A.

Genet Sel Evol. 2015 Oct 13;47:78. doi: 10.1186/s12711-015-0158-9.


Longitudinal muscle gene expression patterns associated with differential intramuscular fat in cattle.

Hudson NJ, Reverter A, Greenwood PL, Guo B, Cafe LM, Dalrymple BP.

Animal. 2015 Apr;9(4):650-9. doi: 10.1017/S1751731114002754. Epub 2014 Nov 13.


Sensory rewiring in an echolocator: genome-wide modification of retinogenic and auditory genes in the bat Myotis davidii.

Hudson NJ, Baker ML, Hart NS, Wynne JW, Gu Q, Huang Z, Zhang G, Ingham AB, Wang L, Reverter A.

G3 (Bethesda). 2014 Aug 4;4(10):1825-35. doi: 10.1534/g3.114.011262.


Differences in muscle transcriptome among pigs phenotypically extreme for fatty acid composition.

Puig-Oliveras A, Ramayo-Caldas Y, Corominas J, Estellé J, Pérez-Montarelo D, Hudson NJ, Casellas J, Folch JM, Ballester M.

PLoS One. 2014 Jun 13;9(6):e99720. doi: 10.1371/journal.pone.0099720. eCollection 2014. Erratum in: PLoS One. 2014 Jul;9(7):e103668.


A marker-derived gene network reveals the regulatory role of PPARGC1A, HNF4G, and FOXP3 in intramuscular fat deposition of beef cattle.

Ramayo-Caldas Y, Fortes MR, Hudson NJ, Porto-Neto LR, Bolormaa S, Barendse W, Kelly M, Moore SS, Goddard ME, Lehnert SA, Reverter A.

J Anim Sci. 2014 Jul;92(7):2832-45. doi: 10.2527/jas.2013-7484. Epub 2014 Apr 28.


Information compression exploits patterns of genome composition to discriminate populations and highlight regions of evolutionary interest.

Hudson NJ, Porto-Neto LR, Kijas J, McWilliam S, Taft RJ, Reverter A.

BMC Bioinformatics. 2014 Mar 7;15:66. doi: 10.1186/1471-2105-15-66.


RNF14 is a regulator of mitochondrial and immune function in muscle.

Ingham AB, Osborne SA, Menzies M, Briscoe S, Chen W, Kongsuwan K, Reverter A, Jeanes A, Dalrymple BP, Wijffels G, Seymour R, Hudson NJ.

BMC Syst Biol. 2014 Jan 29;8:10. doi: 10.1186/1752-0509-8-10.


Inferring the in vivo cellular program of developing bovine skeletal muscle from expression data.

Hudson NJ, Lyons RE, Reverter A, Greenwood PL, Dalrymple BP.

Gene Expr Patterns. 2013 Mar-Apr;13(3-4):109-25. doi: 10.1016/j.gep.2013.02.001. Epub 2013 Feb 16.


Gene expression phenotypes for lipid metabolism and intramuscular fat in skeletal muscle of cattle.

De Jager N, Hudson NJ, Reverter A, Barnard R, Cafe LM, Greenwood PL, Dalrymple BP.

J Anim Sci. 2013 Mar;91(3):1112-28. doi: 10.2527/jas.2012-5409. Epub 2013 Jan 7.


An Always Correlated gene expression landscape for ovine skeletal muscle, lessons learnt from comparison with an "equivalent" bovine landscape.

Sun W, Hudson NJ, Reverter A, Waardenberg AJ, Tellam RL, Vuocolo T, Byrne K, Dalrymple BP.

BMC Res Notes. 2012 Nov 13;5:632. doi: 10.1186/1756-0500-5-632.


Porcine tissue-specific regulatory networks derived from meta-analysis of the transcriptome.

Pérez-Montarelo D, Hudson NJ, Fernández AI, Ramayo-Caldas Y, Dalrymple BP, Reverter A.

PLoS One. 2012;7(9):e46159. doi: 10.1371/journal.pone.0046159. Epub 2012 Sep 26.


Beyond differential expression: the quest for causal mutations and effector molecules.

Hudson NJ, Dalrymple BP, Reverter A.

BMC Genomics. 2012 Jul 31;13:356.


Eukaryotic evolutionary transitions are associated with extreme codon bias in functionally-related proteins.

Hudson NJ, Gu Q, Nagaraj SH, Ding YS, Dalrymple BP, Reverter A.

PLoS One. 2011;6(9):e25457. doi: 10.1371/journal.pone.0025457. Epub 2011 Sep 23.


Chronic exposure to anabolic steroids induces the muscle expression of oxytocin and a more than fiftyfold increase in circulating oxytocin in cattle.

De Jager N, Hudson NJ, Reverter A, Wang YH, Nagaraj SH, Cafe LM, Greenwood PL, Barnard RT, Kongsuwan KP, Dalrymple BP.

Physiol Genomics. 2011 May 13;43(9):467-78. doi: 10.1152/physiolgenomics.00226.2010. Epub 2011 Feb 15.


Musical beauty and information compression: Complex to the ear but simple to the mind?

Hudson NJ.

BMC Res Notes. 2011 Jan 20;4:9. doi: 10.1186/1756-0500-4-9.


Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle.

Gu Q, Nagaraj SH, Hudson NJ, Dalrymple BP, Reverter A.

BMC Genomics. 2011 Jan 12;12:23. doi: 10.1186/1471-2164-12-23.


Enzyme activity in the aestivating green-striped burrowing frog (Cyclorana alboguttata).

Mantle BL, Guderley H, Hudson NJ, Franklin CE.

J Comp Physiol B. 2010 Oct;180(7):1033-43. doi: 10.1007/s00360-010-0471-0. Epub 2010 Apr 3.


Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data.

Reverter A, Hudson NJ, Nagaraj SH, Pérez-Enciso M, Dalrymple BP.

Bioinformatics. 2010 Apr 1;26(7):896-904. doi: 10.1093/bioinformatics/btq051. Epub 2010 Feb 9.


Skeletal muscle atrophy occurs slowly and selectively during prolonged aestivation in Cyclorana alboguttata (Gunther 1867).

Mantle BL, Hudson NJ, Harper GS, Cramp RL, Franklin CE.

J Exp Biol. 2009 Nov;212(Pt 22):3664-72. doi: 10.1242/jeb.033688.


Inferring the transcriptional landscape of bovine skeletal muscle by integrating co-expression networks.

Hudson NJ, Reverter A, Wang Y, Greenwood PL, Dalrymple BP.

PLoS One. 2009 Oct 1;4(10):e7249. doi: 10.1371/journal.pone.0007249.


Surviving the drought: burrowing frogs save energy by increasing mitochondrial coupling.

Kayes SM, Cramp RL, Hudson NJ, Franklin CE.

J Exp Biol. 2009 Jul;212(Pt 14):2248-53. doi: 10.1242/jeb.028233.


A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation.

Hudson NJ, Reverter A, Dalrymple BP.

PLoS Comput Biol. 2009 May;5(5):e1000382. doi: 10.1371/journal.pcbi.1000382. Epub 2009 May 1.


Symmorphosis and livestock bioenergetics: production animal muscle has low mitochondrial volume fractions.

Hudson NJ.

J Anim Physiol Anim Nutr (Berl). 2009 Feb;93(1):1-6. doi: 10.1111/j.1439-0396.2007.00791.x.


Epigenetic silencers are enriched in dormant desert frog muscle.

Hudson NJ, Lonhienne TG, Franklin CE, Harper GS, Lehnert SA.

J Comp Physiol B. 2008 Aug;178(6):729-34. doi: 10.1007/s00360-008-0261-0. Epub 2008 Mar 28.


Role of calcium and vesicle-docking proteins in remobilising dormant neuromuscular junctions in desert frogs.

Lavidis NA, Hudson NJ, Choy PT, Lehnert SA, Franklin CE.

J Comp Physiol A Neuroethol Sens Neural Behav Physiol. 2008 Jan;194(1):27-37. Epub 2007 Nov 7.


Gene expression studies of developing bovine longissimus muscle from two different beef cattle breeds.

Lehnert SA, Reverter A, Byrne KA, Wang Y, Nattrass GS, Hudson NJ, Greenwood PL.

BMC Dev Biol. 2007 Aug 16;7:95.


Obese humans as economically designed feed converters: symmorphosis and low oxidative capacity skeletal muscle.

Hudson NJ, Lehnert SA, Harper GS.

Med Hypotheses. 2008;70(3):693-7. Epub 2007 Jul 30.


Skeletal muscle extracellular matrix remodelling after aestivation in the green striped burrowing frog, Cyclorana alboguttata.

Hudson NJ, Harper GS, Allingham PG, Franklin CE, Barris W, Lehnert SA.

Comp Biochem Physiol A Mol Integr Physiol. 2007 Mar;146(3):440-5. Epub 2006 Dec 16.


The effects of saltwater acclimation on neurotransmitters in the lingual salt glands of the estuarine crocodile, Crocodylus porosus.

Cramp RL, Hudson NJ, Holmberg A, Holmgren S, Franklin CE.

Regul Pept. 2007 Apr 5;140(1-2):55-64. Epub 2006 Dec 19.


Gene expression profiling of bovine skeletal muscle in response to and during recovery from chronic and severe undernutrition.

Lehnert SA, Byrne KA, Reverter A, Nattrass GS, Greenwood PL, Wang YH, Hudson NJ, Harper GS.

J Anim Sci. 2006 Dec;84(12):3239-50.


A gene coexpression network for bovine skeletal muscle inferred from microarray data.

Reverter A, Hudson NJ, Wang Y, Tan SH, Barris W, Byrne KA, McWilliam SM, Bottema CD, Kister A, Greenwood PL, Harper GS, Lehnert SA, Dalrymple BP.

Physiol Genomics. 2006 Dec 13;28(1):76-83. Epub 2006 Sep 19.


Lessons from an estivating frog: sparing muscle protein despite starvation and disuse.

Hudson NJ, Lehnert SA, Ingham AB, Symonds B, Franklin CE, Harper GS.

Am J Physiol Regul Integr Comp Physiol. 2006 Mar;290(3):R836-43. Epub 2005 Oct 20.


Effect of prolonged inactivity on skeletal motor nerve terminals during aestivation in the burrowing frog, Cyclorana alboguttata.

Hudson NJ, Lavidis NA, Choy PT, Franklin CE.

J Comp Physiol A Neuroethol Sens Neural Behav Physiol. 2005 Apr;191(4):373-9. Epub 2005 Jan 13.


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