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Items: 21

1.

MTHFD1 interaction with BRD4 links folate metabolism to transcriptional regulation.

Sdelci S, Rendeiro AF, Rathert P, You W, Lin JG, Ringler A, Hofstätter G, Moll HP, Gürtl B, Farlik M, Schick S, Klepsch F, Oldach M, Buphamalai P, Schischlik F, Májek P, Parapatics K, Schmidl C, Schuster M, Penz T, Buckley DL, Hudecz O, Imre R, Wang SY, Maric HM, Kralovics R, Bennett KL, Müller AC, Mechtler K, Menche J, Bradner JE, Winter GE, Klavins K, Casanova E, Bock C, Zuber J, Kubicek S.

Nat Genet. 2019 Jun;51(6):990-998. doi: 10.1038/s41588-019-0413-z. Epub 2019 May 27.

PMID:
31133746
2.

Spectral Clustering Improves Label-Free Quantification of Low-Abundant Proteins.

Griss J, Stanek F, Hudecz O, Dürnberger G, Perez-Riverol Y, Vizcaíno JA, Mechtler K.

J Proteome Res. 2019 Apr 5;18(4):1477-1485. doi: 10.1021/acs.jproteome.8b00377. Epub 2019 Mar 22.

3.

apQuant: Accurate Label-Free Quantification by Quality Filtering.

Doblmann J, Dusberger F, Imre R, Hudecz O, Stanek F, Mechtler K, Dürnberger G.

J Proteome Res. 2019 Jan 4;18(1):535-541. doi: 10.1021/acs.jproteome.8b00113. Epub 2018 Nov 2.

PMID:
30351950
4.

Reply to 'Defining distance restraints in HADDOCK'.

Orbán-Németh Z, Beveridge R, Hollenstein DM, Rampler E, Stranzl T, Hudecz O, Doblmann J, Schlögelhofer P, Mechtler K.

Nat Protoc. 2018 Jul;13(7):1503-1505. doi: 10.1038/s41596-018-0018-5. No abstract available.

PMID:
29942006
5.

Author Correction: Structural prediction of protein models using distance restraints derived from cross-linking mass spectrometry data.

Orbán-Németh Z, Beveridge R, Hollenstein DM, Rampler E, Stranzl T, Hudecz O, Doblmann J, Schlögelhofer P, Mechtler K.

Nat Protoc. 2018 Jul;13(7):1724. doi: 10.1038/s41596-018-0024-7.

PMID:
29942004
6.

The replicative helicase MCM recruits cohesin acetyltransferase ESCO2 to mediate centromeric sister chromatid cohesion.

Ivanov MP, Ladurner R, Poser I, Beveridge R, Rampler E, Hudecz O, Novatchkova M, Hériché JK, Wutz G, van der Lelij P, Kreidl E, Hutchins JR, Axelsson-Ekker H, Ellenberg J, Hyman AA, Mechtler K, Peters JM.

EMBO J. 2018 Aug 1;37(15). pii: e97150. doi: 10.15252/embj.201797150. Epub 2018 Jun 21.

7.

Structural prediction of protein models using distance restraints derived from cross-linking mass spectrometry data.

Orbán-Németh Z, Beveridge R, Hollenstein DM, Rampler E, Stranzl T, Hudecz O, Doblmann J, Schlögelhofer P, Mechtler K.

Nat Protoc. 2018 Mar;13(3):478-494. doi: 10.1038/nprot.2017.146. Epub 2018 Feb 8. Erratum in: Nat Protoc. 2018 Jul;13(7):1724.

8.

SIRT2 regulates nuclear envelope reassembly through ANKLE2 deacetylation.

Kaufmann T, Kukolj E, Brachner A, Beltzung E, Bruno M, Kostrhon S, Opravil S, Hudecz O, Mechtler K, Warren G, Slade D.

J Cell Sci. 2016 Dec 15;129(24):4607-4621. Epub 2016 Nov 14.

9.

Correction to "Comprehensive Cross-Linking Mass Spectrometry Reveals Parallel Orientation and Flexible Conformations of Plant HOP2-MND1".

Rampler E, Stranzl T, Orban-Nemeth Z, Hollenstein DM, Hudecz O, Schlögelhofer P, Mechtler K.

J Proteome Res. 2016 May 6;15(5):1732. doi: 10.1021/acs.jproteome.6b00257. Epub 2016 Apr 4. No abstract available.

PMID:
27043818
10.

Comprehensive Cross-Linking Mass Spectrometry Reveals Parallel Orientation and Flexible Conformations of Plant HOP2-MND1.

Rampler E, Stranzl T, Orban-Nemeth Z, Hollenstein DM, Hudecz O, Schlögelhofer P, Mechtler K.

J Proteome Res. 2015 Dec 4;14(12):5048-62. doi: 10.1021/acs.jproteome.5b00903. Epub 2015 Nov 18. Erratum in: J Proteome Res. 2016 May 6;15(5):1732.

12.

Global analysis of muscle-specific kinase signaling by quantitative phosphoproteomics.

Dürnberger G, Camurdanoglu BZ, Tomschik M, Schutzbier M, Roitinger E, Hudecz O, Mechtler K, Herbst R.

Mol Cell Proteomics. 2014 Aug;13(8):1993-2003. doi: 10.1074/mcp.M113.036087. Epub 2014 Jun 4.

13.

Systematic phosphorylation analysis of human mitotic protein complexes.

Hegemann B, Hutchins JR, Hudecz O, Novatchkova M, Rameseder J, Sykora MM, Liu S, Mazanek M, Lénárt P, Hériché JK, Poser I, Kraut N, Hyman AA, Yaffe MB, Mechtler K, Peters JM.

Sci Signal. 2011 Nov 8;4(198):rs12. doi: 10.1126/scisignal.2001993.

14.

Quantitative phospho-proteomics to investigate the polo-like kinase 1-dependent phospho-proteome.

Grosstessner-Hain K, Hegemann B, Novatchkova M, Rameseder J, Joughin BA, Hudecz O, Roitinger E, Pichler P, Kraut N, Yaffe MB, Peters JM, Mechtler K.

Mol Cell Proteomics. 2011 Nov;10(11):M111.008540. doi: 10.1074/mcp.M111.008540. Epub 2011 Aug 21.

15.

Spatial exclusivity combined with positive and negative selection of phosphorylation motifs is the basis for context-dependent mitotic signaling.

Alexander J, Lim D, Joughin BA, Hegemann B, Hutchins JR, Ehrenberger T, Ivins F, Sessa F, Hudecz O, Nigg EA, Fry AM, Musacchio A, Stukenberg PT, Mechtler K, Peters JM, Smerdon SJ, Yaffe MB.

Sci Signal. 2011 Jun 28;4(179):ra42. doi: 10.1126/scisignal.2001796.

16.

Live-cell imaging RNAi screen identifies PP2A-B55alpha and importin-beta1 as key mitotic exit regulators in human cells.

Schmitz MH, Held M, Janssens V, Hutchins JR, Hudecz O, Ivanova E, Goris J, Trinkle-Mulcahy L, Lamond AI, Poser I, Hyman AA, Mechtler K, Peters JM, Gerlich DW.

Nat Cell Biol. 2010 Sep;12(9):886-93. doi: 10.1038/ncb2092. Epub 2010 Aug 15.

17.

Systematic analysis of human protein complexes identifies chromosome segregation proteins.

Hutchins JR, Toyoda Y, Hegemann B, Poser I, Hériché JK, Sykora MM, Augsburg M, Hudecz O, Buschhorn BA, Bulkescher J, Conrad C, Comartin D, Schleiffer A, Sarov M, Pozniakovsky A, Slabicki MM, Schloissnig S, Steinmacher I, Leuschner M, Ssykor A, Lawo S, Pelletier L, Stark H, Nasmyth K, Ellenberg J, Durbin R, Buchholz F, Mechtler K, Hyman AA, Peters JM.

Science. 2010 Apr 30;328(5978):593-9. doi: 10.1126/science.1181348. Epub 2010 Apr 1.

18.

QIKS--Quantitative identification of kinase substrates.

Morandell S, Grosstessner-Hain K, Roitinger E, Hudecz O, Lindhorst T, Teis D, Wrulich OA, Mazanek M, Taus T, Ueberall F, Mechtler K, Huber LA.

Proteomics. 2010 May;10(10):2015-25. doi: 10.1002/pmic.200900749.

PMID:
20217869
19.

Probing the phosphoproteome of HeLa cells using nanocast metal oxide microspheres for phosphopeptide enrichment.

Leitner A, Sturm M, Hudecz O, Mazanek M, Smått JH, Lindén M, Lindner W, Mechtler K.

Anal Chem. 2010 Apr 1;82(7):2726-33. doi: 10.1021/ac902560z.

PMID:
20201521
20.

A new acid mix enhances phosphopeptide enrichment on titanium- and zirconium dioxide for mapping of phosphorylation sites on protein complexes.

Mazanek M, Roitinger E, Hudecz O, Hutchins JR, Hegemann B, Mitulović G, Taus T, Stingl C, Peters JM, Mechtler K.

J Chromatogr B Analyt Technol Biomed Life Sci. 2010 Feb 15;878(5-6):515-24. doi: 10.1016/j.jchromb.2009.12.017. Epub 2009 Dec 22.

PMID:
20075017
21.

Preventing carryover of peptides and proteins in nano LC-MS separations.

Mitulović G, Stingl C, Steinmacher I, Hudecz O, Hutchins JR, Peters JM, Mechtler K.

Anal Chem. 2009 Jul 15;81(14):5955-60. doi: 10.1021/ac900696m.

PMID:
19537771

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