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Items: 10

1.

Challenges in Peptide-Spectrum Matching: A Robust and Reproducible Statistical Framework for Removing Low-Accuracy, High-Scoring Hits.

Hubler SL, Kumar P, Mehta S, Easterly C, Johnson JE, Jagtap PD, Griffin TJ.

J Proteome Res. 2020 Jan 3;19(1):161-173. doi: 10.1021/acs.jproteome.9b00478. Epub 2019 Dec 20.

PMID:
31793300
2.

1,25-Dihydroxyvitamin D3 increases the methionine cycle, CD4+ T cell DNA methylation and Helios+Foxp3+ T regulatory cells to reverse autoimmune neurodegenerative disease.

Moore JR, Hubler SL, Nelson CD, Nashold FE, Spanier JA, Hayes CE.

J Neuroimmunol. 2018 Nov 15;324:100-114. doi: 10.1016/j.jneuroim.2018.09.008. Epub 2018 Sep 21.

PMID:
30267995
3.

Vitamin D Actions on CD4(+) T Cells in Autoimmune Disease.

Hayes CE, Hubler SL, Moore JR, Barta LE, Praska CE, Nashold FE.

Front Immunol. 2015 Mar 18;6:100. doi: 10.3389/fimmu.2015.00100. eCollection 2015. Review.

4.

Quantitative proteomics reveals factors regulating RNA biology as dynamic targets of stress-induced SUMOylation in Arabidopsis.

Miller MJ, Scalf M, Rytz TC, Hubler SL, Smith LM, Vierstra RD.

Mol Cell Proteomics. 2013 Feb;12(2):449-63. doi: 10.1074/mcp.M112.025056. Epub 2012 Nov 29.

5.

A quantitative map of the liver mitochondrial phosphoproteome reveals posttranslational control of ketogenesis.

Grimsrud PA, Carson JJ, Hebert AS, Hubler SL, Niemi NM, Bailey DJ, Jochem A, Stapleton DS, Keller MP, Westphall MS, Yandell BS, Attie AD, Coon JJ, Pagliarini DJ.

Cell Metab. 2012 Nov 7;16(5):672-83. doi: 10.1016/j.cmet.2012.10.004.

6.

Mass Distributions of Linear Chain Polymers.

Hubler SL, Craciun G.

J Math Chem. 2012 Jun 1;50(6):1458-1483.

7.

Periodic patterns in distributions of peptide masses.

Hubler SL, Craciun G.

Biosystems. 2012 Aug;109(2):179-85. doi: 10.1016/j.biosystems.2012.04.008. Epub 2012 May 8.

8.

A dynamic model of proteome changes reveals new roles for transcript alteration in yeast.

Lee MV, Topper SE, Hubler SL, Hose J, Wenger CD, Coon JJ, Gasch AP.

Mol Syst Biol. 2011 Jul 19;7:514. doi: 10.1038/msb.2011.48.

9.

Characterization and diagnostic value of amino acid side chain neutral losses following electron-transfer dissociation.

Xia Q, Lee MV, Rose CM, Marsh AJ, Hubler SL, Wenger CD, Coon JJ.

J Am Soc Mass Spectrom. 2011 Feb;22(2):255-64. doi: 10.1007/s13361-010-0029-0. Epub 2011 Jan 27.

10.

Valence parity renders z(*)-type ions chemically distinct.

Hubler SL, Jue A, Keith J, McAlister GC, Craciun G, Coon JJ.

J Am Chem Soc. 2008 May 21;130(20):6388-94. doi: 10.1021/ja7099985. Epub 2008 Apr 29.

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