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Items: 31

1.

Alignment-free filtering for cfNA fusion fragments.

Yang X, Saito Y, Rao A, Kim HJ, Singh P, Scott E, Larson M, Pan W, Desai M, Hubbell E.

Bioinformatics. 2019 Jul 15;35(14):i225-i232. doi: 10.1093/bioinformatics/btz346.

2.

Next generation genome-wide association tool: design and coverage of a high-throughput European-optimized SNP array.

Hoffmann TJ, Kvale MN, Hesselson SE, Zhan Y, Aquino C, Cao Y, Cawley S, Chung E, Connell S, Eshragh J, Ewing M, Gollub J, Henderson M, Hubbell E, Iribarren C, Kaufman J, Lao RZ, Lu Y, Ludwig D, Mathauda GK, McGuire W, Mei G, Miles S, Purdy MM, Quesenberry C, Ranatunga D, Rowell S, Sadler M, Shapero MH, Shen L, Shenoy TR, Smethurst D, Van den Eeden SK, Walter L, Wan E, Wearley R, Webster T, Wen CC, Weng L, Whitmer RA, Williams A, Wong SC, Zau C, Finn A, Schaefer C, Kwok PY, Risch N.

Genomics. 2011 Aug;98(2):79-89. doi: 10.1016/j.ygeno.2011.04.005. Epub 2011 Apr 30.

3.

Resolving deconvolution ambiguity in gene alternative splicing.

She Y, Hubbell E, Wang H.

BMC Bioinformatics. 2009 Aug 4;10:237. doi: 10.1186/1471-2105-10-237.

4.

Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs.

Korn JM, Kuruvilla FG, McCarroll SA, Wysoker A, Nemesh J, Cawley S, Hubbell E, Veitch J, Collins PJ, Darvishi K, Lee C, Nizzari MM, Gabriel SB, Purcell S, Daly MJ, Altshuler D.

Nat Genet. 2008 Oct;40(10):1253-60. doi: 10.1038/ng.237. Epub 2008 Sep 7.

5.

Integrated detection and population-genetic analysis of SNPs and copy number variation.

McCarroll SA, Kuruvilla FG, Korn JM, Cawley S, Nemesh J, Wysoker A, Shapero MH, de Bakker PI, Maller JB, Kirby A, Elliott AL, Parkin M, Hubbell E, Webster T, Mei R, Veitch J, Collins PJ, Handsaker R, Lincoln S, Nizzari M, Blume J, Jones KW, Rava R, Daly MJ, Gabriel SB, Altshuler D.

Nat Genet. 2008 Oct;40(10):1166-74. doi: 10.1038/ng.238. Epub 2008 Sep 7.

PMID:
18776908
6.

DNA copy number analysis in gastrointestinal stromal tumors using gene expression microarrays.

Antonescu CR, Wu K, Xing GL, Cao M, Turpaz Y, Leversha MA, Hubbell E, Maki RG, Miyada CG, Pillai R.

Cancer Inform. 2008;6:59-75. Epub 2008 Mar 27.

7.

Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays.

Matsuzaki H, Dong S, Loi H, Di X, Liu G, Hubbell E, Law J, Berntsen T, Chadha M, Hui H, Yang G, Kennedy GC, Webster TA, Cawley S, Walsh PS, Jones KW, Fodor SP, Mei R.

Nat Methods. 2004 Nov;1(2):109-11.

PMID:
15782172
8.

Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarrays.

Di X, Matsuzaki H, Webster TA, Hubbell E, Liu G, Dong S, Bartell D, Huang J, Chiles R, Yang G, Shen MM, Kulp D, Kennedy GC, Mei R, Jones KW, Cawley S.

Bioinformatics. 2005 May 1;21(9):1958-63. Epub 2005 Jan 18.

PMID:
15657097
9.

NetAffx Gene Ontology Mining Tool: a visual approach for microarray data analysis.

Cheng J, Sun S, Tracy A, Hubbell E, Morris J, Valmeekam V, Kimbrough A, Cline MS, Liu G, Shigeta R, Kulp D, Siani-Rose MA.

Bioinformatics. 2004 Jun 12;20(9):1462-3. Epub 2004 Feb 12.

PMID:
14962933
10.

Probe selection for high-density oligonucleotide arrays.

Mei R, Hubbell E, Bekiranov S, Mittmann M, Christians FC, Shen MM, Lu G, Fang J, Liu WM, Ryder T, Kaplan P, Kulp D, Webster TA.

Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11237-42. Epub 2003 Sep 19.

11.

Gene structure-based splice variant deconvolution using a microarray platform.

Wang H, Hubbell E, Hu JS, Mei G, Cline M, Lu G, Clark T, Siani-Rose MA, Ares M, Kulp DC, Haussler D.

Bioinformatics. 2003;19 Suppl 1:i315-22.

PMID:
12855476
12.

Analysis of high density expression microarrays with signed-rank call algorithms.

Liu WM, Mei R, Di X, Ryder TB, Hubbell E, Dee S, Webster TA, Harrington CA, Ho MH, Baid J, Smeekens SP.

Bioinformatics. 2002 Dec;18(12):1593-9.

PMID:
12490443
13.

Robust estimators for expression analysis.

Hubbell E, Liu WM, Mei R.

Bioinformatics. 2002 Dec;18(12):1585-92.

PMID:
12490442
14.

Multiplex sequencing by hybridization.

Hubbell E.

J Comput Biol. 2001;8(2):141-9.

PMID:
11454302
15.

Fidelity probes for DNA arrays.

Hubbell E, Pevzner PA.

Proc Int Conf Intell Syst Mol Biol. 1999:113-7.

PMID:
10786293
16.

Genome-wide mapping with biallelic markers in Arabidopsis thaliana.

Cho RJ, Mindrinos M, Richards DR, Sapolsky RJ, Anderson M, Drenkard E, Dewdney J, Reuber TL, Stammers M, Federspiel N, Theologis A, Yang WH, Hubbell E, Au M, Chung EY, Lashkari D, Lemieux B, Dean C, Lipshutz RJ, Ausubel FM, Davis RW, Oefner PJ.

Nat Genet. 1999 Oct;23(2):203-7.

PMID:
10508518
17.

Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome.

Wang DG, Fan JB, Siao CJ, Berno A, Young P, Sapolsky R, Ghandour G, Perkins N, Winchester E, Spencer J, Kruglyak L, Stein L, Hsie L, Topaloglou T, Hubbell E, Robinson E, Mittmann M, Morris MS, Shen N, Kilburn D, Rioux J, Nusbaum C, Rozen S, Hudson TJ, Lipshutz R, Chee M, Lander ES.

Science. 1998 May 15;280(5366):1077-82.

18.

Accessing genetic information with high-density DNA arrays.

Chee M, Yang R, Hubbell E, Berno A, Huang XC, Stern D, Winkler J, Lockhart DJ, Morris MS, Fodor SP.

Science. 1996 Oct 25;274(5287):610-4.

PMID:
8849452
19.

Extensive polymorphisms observed in HIV-1 clade B protease gene using high-density oligonucleotide arrays.

Kozal MJ, Shah N, Shen N, Yang R, Fucini R, Merigan TC, Richman DD, Morris D, Hubbell E, Chee M, Gingeras TR.

Nat Med. 1996 Jul;2(7):753-9.

PMID:
8673920
20.

Using oligonucleotide probe arrays to access genetic diversity.

Lipshutz RJ, Morris D, Chee M, Hubbell E, Kozal MJ, Shah N, Shen N, Yang R, Fodor SP.

Biotechniques. 1995 Sep;19(3):442-7. Review.

PMID:
7495558
21.

Endomyocardial biopsy findings after photopheresis treatment of cardiac transplant rejection.

Winters GL, Costanzo-Nordin M, Hubbell EA, Wilson JE, McManus BM, Johnson MR, Robinson JA.

Cardiovasc Pathol. 1993 Apr-Jun;2(2):145-53. doi: 10.1016/1054-8807(93)90026-X.

PMID:
25990609
22.

Efficacy of photopheresis in the rescue therapy of acute cellular rejection in human heart allografts: a preliminary clinical and immunopathologic report.

Costanzo-Nordin MR, McManus BM, Wilson JE, O'Sullivan EJ, Hubbell EA, Robinson JA.

Transplant Proc. 1993 Feb;25(1 Pt 2):881-3. No abstract available.

PMID:
8442255
23.

Photopheresis versus corticosteroids in the therapy of heart transplant rejection. Preliminary clinical report.

Costanzo-Nordin MR, Hubbell EA, O'Sullivan EJ, Johnson MR, Mullen GM, Heroux AL, Kao WG, McManus BM, Pifarre R, Robinson JA.

Circulation. 1992 Nov;86(5 Suppl):II242-50.

PMID:
1424007
24.

Successful treatment of heart transplant rejection with photopheresis.

Costanzo-Nordin MR, Hubbell EA, O'Sullivan EJ, Johnson MR, Mullen GM, Heroux AL, Kao WG, McManus BM, Pifarre R, Robinson JA.

Transplantation. 1992 Apr;53(4):808-15.

PMID:
1566346
25.

Pathophysiology of systemic lupus erythematosus for pheresis operators.

Hubbell E.

J Clin Apher. 1990;5(2):115-8. Review. No abstract available.

PMID:
2404969
26.

Long-term follow-up of heart transplant recipients treated with murine antihuman mature T cell monoclonal antibody (OKT3): the Loyola experience.

Costanzo-Nordin MR, O'Sullivan EJ, Hubbell EA, Zucker MJ, Pifarre R, McManus BM, Winters GL, Scanlon PJ, Robinson JA.

J Heart Transplant. 1989 Jul-Aug;8(4):288-95.

PMID:
2504895
27.

Plasmapheresis and pulse cyclophosphamide in systemic lupus erythematosus.

Barr WG, Hubbell EA, Robinson JA.

Ann Intern Med. 1988 Jan;108(1):152-3. No abstract available.

PMID:
3337500
28.

Quantitation in the evaluation of cell substrates for viral vaccine production.

Parks WP, Hubbell ES.

Adv Exp Med Biol. 1979;118:23-33. No abstract available.

PMID:
495268
29.

High frequency variation in mammary tumor virus expression in cell culture.

Parks WP, Hubbell ES, Goldberg RJ, O'Neill FJ, Scolnick EM.

Cell. 1976 May;8(1):87-93.

PMID:
182380
30.

Propagation of Venezuelan equine encephalomyelitis virus in cultures of human malignant epithelial cells, strain HeLa.

MURPHY LC, HUBBELL EJ, YAGER RH.

Am J Vet Res. 1955 Apr;16(59):304-7. No abstract available.

PMID:
14361934
31.

Tissue culture studies of Venezuelan equine encephalomyelitis virus. I. Propagation in human uterine tissue.

GAJDUSEK DC, ANSLOW RO, HUBBELL EJ, YAGER RH.

J Immunol. 1954 Mar;72(3):224-8. No abstract available.

PMID:
13143203

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