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Items: 1 to 50 of 65

1.

Publisher Correction: The long tail of oncogenic drivers in prostate cancer.

Armenia J, Wankowicz SAM, Liu D, Gao J, Kundra R, Reznik E, Chatila WK, Chakravarty D, Han GC, Coleman I, Montgomery B, Pritchard C, Morrissey C, Barbieri CE, Beltran H, Sboner A, Zafeiriou Z, Miranda S, Bielski CM, Penson AV, Tolonen C, Huang FW, Robinson D, Wu YM, Lonigro R, Garraway LA, Demichelis F, Kantoff PW, Taplin ME, Abida W, Taylor BS, Scher HI, Nelson PS, de Bono JS, Rubin MA, Sawyers CL, Chinnaiyan AM; PCF/SU2C International Prostate Cancer Dream Team, Schultz N, Van Allen EM.

Nat Genet. 2019 May 31. doi: 10.1038/s41588-019-0451-6. [Epub ahead of print]

PMID:
31152158
2.

Next-generation characterization of the Cancer Cell Line Encyclopedia.

Ghandi M, Huang FW, Jané-Valbuena J, Kryukov GV, Lo CC, McDonald ER 3rd, Barretina J, Gelfand ET, Bielski CM, Li H, Hu K, Andreev-Drakhlin AY, Kim J, Hess JM, Haas BJ, Aguet F, Weir BA, Rothberg MV, Paolella BR, Lawrence MS, Akbani R, Lu Y, Tiv HL, Gokhale PC, de Weck A, Mansour AA, Oh C, Shih J, Hadi K, Rosen Y, Bistline J, Venkatesan K, Reddy A, Sonkin D, Liu M, Lehar J, Korn JM, Porter DA, Jones MD, Golji J, Caponigro G, Taylor JE, Dunning CM, Creech AL, Warren AC, McFarland JM, Zamanighomi M, Kauffmann A, Stransky N, Imielinski M, Maruvka YE, Cherniack AD, Tsherniak A, Vazquez F, Jaffe JD, Lane AA, Weinstock DM, Johannessen CM, Morrissey MP, Stegmeier F, Schlegel R, Hahn WC, Getz G, Mills GB, Boehm JS, Golub TR, Garraway LA, Sellers WR.

Nature. 2019 May;569(7757):503-508. doi: 10.1038/s41586-019-1186-3. Epub 2019 May 8.

PMID:
31068700
3.

Racial Disparities in Low-Risk Prostate Cancer-Reply.

Mahal BA, Huang FW.

JAMA. 2019 May 7;321(17):1727-1728. doi: 10.1001/jama.2019.2088. No abstract available.

PMID:
31063570
4.

A Tumor-Agnostic NTRK (TRK) Inhibitor.

Huang FW, Feng FY.

Cell. 2019 Mar 21;177(1):8. doi: 10.1016/j.cell.2019.02.049.

PMID:
30901551
5.

Association of sudden in-hospital cardiac arrest with emergency department crowding.

Chang YH, Shih HM, Chen CY, Chen WK, Huang FW, Muo CH.

Resuscitation. 2019 May;138:106-109. doi: 10.1016/j.resuscitation.2019.03.001. Epub 2019 Mar 9.

PMID:
30862425
6.

Derivation and Validation of the SWAP Score for Very Early Prediction of Neurologic Outcome in Patients With Out-of-Hospital Cardiac Arrest.

Shih HM, Chen YC, Chen CY, Huang FW, Chang SS, Yu SH, Wu SY, Chen WK.

Ann Emerg Med. 2019 Jun;73(6):578-588. doi: 10.1016/j.annemergmed.2019.01.017. Epub 2019 Feb 26.

PMID:
30819521
7.

Prostate Cancer Genomic-risk Differences Between African-American and White Men Across Gleason Scores.

Mahal BA, Alshalalfa M, Spratt DE, Davicioni E, Zhao SG, Feng FY, Rebbeck TR, Nguyen PL, Huang FW.

Eur Urol. 2019 Jun;75(6):1038-1040. doi: 10.1016/j.eururo.2019.01.010. Epub 2019 Jan 22. No abstract available.

PMID:
30683576
8.

A Boltzmann Sampler for 1-Pairs with Double Filtration.

Barrett C, He Q, Huang FW, Reidys CM.

J Comput Biol. 2019 Mar;26(3):173-192. doi: 10.1089/cmb.2018.0095. Epub 2019 Jan 17.

PMID:
30653353
9.

Prostate Cancer-Specific Mortality Across Gleason Scores in Black vs Nonblack Men.

Mahal BA, Berman RA, Taplin ME, Huang FW.

JAMA. 2018 Dec 18;320(23):2479-2481. doi: 10.1001/jama.2018.11716. No abstract available.

PMID:
30561471
10.

Towards Greater Inclusion in Cancer Genomics Studies.

Huang FW.

Cancer Res. 2018 Dec 15;78(24):6726-6727. doi: 10.1158/0008-5472.CAN-18-3382.

PMID:
30552120
11.

Further emission efficiency improvement of a commercial-quality light-emitting diode through surface plasmon coupling.

Lin CH, Su CY, Yao YF, Su MY, Chiang HC, Tsai MC, Liu WH, Tu CG, Kiang YW, Yang CC, Huang FW, Lee CL, Hsu TC.

Opt Lett. 2018 Nov 15;43(22):5631-5634. doi: 10.1364/OL.43.005631.

PMID:
30439912
12.

An Efficient Dual Sampling Algorithm with Hamming Distance Filtration.

Barrett C, He Q, Huang FW, Reidys CM.

J Comput Biol. 2018 Nov;25(11):1179-1192. doi: 10.1089/cmb.2018.0075. Epub 2018 Aug 22.

PMID:
30133328
13.

GaN intermediate band solar cells with Mn-doped absorption layer.

Lee ML, Huang FW, Chen PC, Sheu JK.

Sci Rep. 2018 Jun 5;8(1):8641. doi: 10.1038/s41598-018-27005-z.

14.

The long tail of oncogenic drivers in prostate cancer.

Armenia J, Wankowicz SAM, Liu D, Gao J, Kundra R, Reznik E, Chatila WK, Chakravarty D, Han GC, Coleman I, Montgomery B, Pritchard C, Morrissey C, Barbieri CE, Beltran H, Sboner A, Zafeiriou Z, Miranda S, Bielski CM, Penson AV, Tolonen C, Huang FW, Robinson D, Wu YM, Lonigro R, Garraway LA, Demichelis F, Kantoff PW, Taplin ME, Abida W, Taylor BS, Scher HI, Nelson PS, de Bono JS, Rubin MA, Sawyers CL, Chinnaiyan AM; PCF/SU2C International Prostate Cancer Dream Team, Schultz N, Van Allen EM.

Nat Genet. 2018 May;50(5):645-651. doi: 10.1038/s41588-018-0078-z. Epub 2018 Apr 2. Erratum in: Nat Genet. 2019 May 31;:.

15.

Allele-Specific DNA Methylation and Its Interplay with Repressive Histone Marks at Promoter-Mutant TERT Genes.

Stern JL, Paucek RD, Huang FW, Ghandi M, Nwumeh R, Costello JC, Cech TR.

Cell Rep. 2017 Dec 26;21(13):3700-3707. doi: 10.1016/j.celrep.2017.12.001.

16.

Identification of novel prostate cancer drivers using RegNetDriver: a framework for integration of genetic and epigenetic alterations with tissue-specific regulatory network.

Dhingra P, Martinez-Fundichely A, Berger A, Huang FW, Forbes AN, Liu EM, Liu D, Sboner A, Tamayo P, Rickman DS, Rubin MA, Khurana E.

Genome Biol. 2017 Jul 27;18(1):141. doi: 10.1186/s13059-017-1266-3.

17.

Exome Sequencing of African-American Prostate Cancer Reveals Loss-of-Function ERF Mutations.

Huang FW, Mosquera JM, Garofalo A, Oh C, Baco M, Amin-Mansour A, Rabasha B, Bahl S, Mullane SA, Robinson BD, Aldubayan S, Khani F, Karir B, Kim E, Chimene-Weiss J, Hofree M, Romanel A, Osborne JR, Kim JW, Azabdaftari G, Woloszynska-Read A, Sfanos K, De Marzo AM, Demichelis F, Gabriel S, Van Allen EM, Mesirov J, Tamayo P, Rubin MA, Powell IJ, Garraway LA.

Cancer Discov. 2017 Sep;7(9):973-983. doi: 10.1158/2159-8290.CD-16-0960. Epub 2017 May 17.

18.

Sequence-structure relations of biopolymers.

Barrett C, Huang FW, Reidys CM.

Bioinformatics. 2017 Feb 1;33(3):382-389. doi: 10.1093/bioinformatics/btw621.

PMID:
28171628
19.

Topological language for RNA.

Huang FW, Reidys CM.

Math Biosci. 2016 Dec;282:109-120. doi: 10.1016/j.mbs.2016.10.006. Epub 2016 Oct 20.

PMID:
27773681
20.

Awareness, Interest, and Preferences of Primary Care Providers in Using Point-of-Care Cancer Screening Technology.

Kim CS, Vanture S, Cho M, Klapperich CM, Wang C, Huang FW.

PLoS One. 2016 Jan 15;11(1):e0145215. doi: 10.1371/journal.pone.0145215. eCollection 2016.

21.

TERT promoter mutations and monoallelic activation of TERT in cancer.

Huang FW, Bielski CM, Rinne ML, Hahn WC, Sellers WR, Stegmeier F, Garraway LA, Kryukov GV.

Oncogenesis. 2015 Dec 14;4:e176. doi: 10.1038/oncsis.2015.39.

22.

DMSO Enhances TGF-β Activity by Recruiting the Type II TGF-β Receptor From Intracellular Vesicles to the Plasma Membrane.

Huang SS, Chen CL, Huang FW, Hou WH, Huang JS.

J Cell Biochem. 2016 Jul;117(7):1568-79. doi: 10.1002/jcb.25448. Epub 2016 Feb 18.

23.

Shapes of topological RNA structures.

Huang FW, Reidys CM.

Math Biosci. 2015 Dec;270(Pt A):57-65. doi: 10.1016/j.mbs.2015.10.004. Epub 2015 Oct 19.

PMID:
26482318
24.

Ethanol Enhances TGF-β Activity by Recruiting TGF-β Receptors From Intracellular Vesicles/Lipid Rafts/Caveolae to Non-Lipid Raft Microdomains.

Huang SS, Chen CL, Huang FW, Johnson FE, Huang JS.

J Cell Biochem. 2016 Apr;117(4):860-71. doi: 10.1002/jcb.25389. Epub 2015 Oct 18.

25.

Launching an Interactive Cancer Projects Map: A Collaborative Approach to Global Cancer Research and Program Development.

Trimble EL, Chisti AA, Craycroft JA, Duncan K, Gupta M, Gutierrez D, Rosenberg I, Sharara N, Sivaram S, Topazian HM, Wang JJ, Williams MJ, Huang FW, Bhatt AS.

J Glob Oncol. 2015 Sep 23;1(1):7-10. doi: 10.1200/JGO.2015.000034. eCollection 2015 Oct. No abstract available.

26.

Rapid Intraoperative Molecular Characterization of Glioma.

Shankar GM, Francis JM, Rinne ML, Ramkissoon SH, Huang FW, Venteicher AS, Akama-Garren EH, Kang YJ, Lelic N, Kim JC, Brown LE, Charbonneau SK, Golby AJ, Sekhar Pedamallu C, Hoang MP, Sullivan RJ, Cherniack AD, Garraway LA, Stemmer-Rachamimov A, Reardon DA, Wen PY, Brastianos PK, Curry WT, Barker FG 2nd, Hahn WC, Nahed BV, Ligon KL, Louis DN, Cahill DP, Meyerson M.

JAMA Oncol. 2015 Aug;1(5):662-7. doi: 10.1001/jamaoncol.2015.0917.

27.

Paeonolum protects against MPP(+)-induced neurotoxicity in zebrafish and PC12 cells.

Lu XL, Lin YH, Wu Q, Su FJ, Ye CH, Shi L, He BX, Huang FW, Pei Z, Yao XL.

BMC Complement Altern Med. 2015 Apr 29;15:137. doi: 10.1186/s12906-015-0661-0.

28.

Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine.

Van Allen EM, Wagle N, Stojanov P, Perrin DL, Cibulskis K, Marlow S, Jane-Valbuena J, Friedrich DC, Kryukov G, Carter SL, McKenna A, Sivachenko A, Rosenberg M, Kiezun A, Voet D, Lawrence M, Lichtenstein LT, Gentry JG, Huang FW, Fostel J, Farlow D, Barbie D, Gandhi L, Lander ES, Gray SW, Joffe S, Janne P, Garber J, MacConaill L, Lindeman N, Rollins B, Kantoff P, Fisher SA, Gabriel S, Getz G, Garraway LA.

Nat Med. 2014 Jun;20(6):682-8. doi: 10.1038/nm.3559. Epub 2014 May 18.

29.

Generation of RNA pseudoknot structures with topological genus filtration.

Huang FW, Nebel ME, Reidys CM.

Math Biosci. 2013 Oct;245(2):216-25. doi: 10.1016/j.mbs.2013.07.014. Epub 2013 Jul 27.

PMID:
23900061
30.

Highly recurrent TERT promoter mutations in human melanoma.

Huang FW, Hodis E, Xu MJ, Kryukov GV, Chin L, Garraway LA.

Science. 2013 Feb 22;339(6122):957-9. doi: 10.1126/science.1229259. Epub 2013 Jan 24.

31.

On the combinatorics of sparsification.

Huang FW, Reidys CM.

Algorithms Mol Biol. 2012 Oct 22;7(1):28. doi: 10.1186/1748-7188-7-28.

32.

Mn-doped GaN as photoelectrodes for the photoelectrolysis of water under visible light.

Liu SY, Sheu JK, Lin YC, Tu SJ, Huang FW, Lee ML, Lai WC.

Opt Express. 2012 Sep 10;20 Suppl 5:A678-83. doi: 10.1364/OE.20.00A678.

PMID:
23037534
33.

Topology of RNA-RNA interaction structures.

Andersen JE, Huang FW, Penner RC, Reidys CM.

J Comput Biol. 2012 Jul;19(7):928-43. doi: 10.1089/cmb.2011.0308. Epub 2012 Jun 25.

PMID:
22731621
34.

Immersed finger-type indium tin oxide ohmic contacts on p-GaN photoelectrodes for photoelectrochemical hydrogen generation.

Liu SY, Sheu JK, Lee ML, Lin YC, Tu SJ, Huang FW, Lai WC.

Opt Express. 2012 Mar 12;20 Suppl 2:A190-6. doi: 10.1364/OE.20.00A190.

PMID:
22418667
35.

Vertical InGaN light-emitting diodes with a sapphire-face-up structure.

Yang YC, Sheu JK, Lee ML, Tu SJ, Huang FW, Lai WC, Hon S, Ko TK.

Opt Express. 2012 Jan 2;20(1):A119-24.

PMID:
22379672
36.

Linear photon up-conversion of 450 meV in InGaN/GaN multiple quantum wells via Mn-doped GaN intermediate band photodetection.

Huang FW, Sheu JK, Lee ML, Tu SJ, Lai WC, Tsai WC, Chang WH.

Opt Express. 2011 Nov 7;19 Suppl 6:A1211-8. doi: 10.1364/OE.19.0A1211.

PMID:
22109617
37.

Hydrogen gas generation using n-GaN photoelectrodes with immersed Indium Tin Oxide ohmic contacts.

Liu SY, Lin YC, Ye JC, Tu SJ, Huang FW, Lee ML, Lai WC, Sheu JK.

Opt Express. 2011 Nov 7;19 Suppl 6:A1196-201. doi: 10.1364/OE.19.0A1196.

PMID:
22109615
38.

Addendum: topology and prediction of RNA pseudoknots.

Reidys CM, Huang FW, Andersen JE, Penner RC, Stadler PF, Nebel ME.

Bioinformatics. 2012 Jan 15;28(2):300. doi: 10.1093/bioinformatics/btr643. Epub 2011 Nov 20. No abstract available.

PMID:
22106334
39.

A strategy to improve serum-tolerant transfection activity of polycation vectors by surface hydroxylation.

Luo XH, Huang FW, Qin SY, Wang HF, Feng J, Zhang XZ, Zhuo RX.

Biomaterials. 2011 Dec;32(36):9925-39. doi: 10.1016/j.biomaterials.2011.09.011. Epub 2011 Sep 17.

PMID:
21930297
40.

Characteristics of InGaN-based concentrator solar cells operating under 150X solar concentration.

Yang CC, Jang CH, Sheu JK, Lee ML, Tu SJ, Huang FW, Yeh YH, Lai WC.

Opt Express. 2011 Jul 4;19 Suppl 4:A695-700. doi: 10.1364/OE.19.00A695.

PMID:
21747536
41.

Enhanced output power of GaN-based LEDs with embedded AlGaN pyramidal shells.

Tu SJ, Sheu JK, Lee ML, Yang CC, Chang KH, Yeh YH, Huang FW, Lai WC.

Opt Express. 2011 Jun 20;19(13):12719-26. doi: 10.1364/OE.19.012719.

PMID:
21716514
42.

High-performance GaN metal-insulator-semiconductor ultraviolet photodetectors using gallium oxide as gate layer.

Lee ML, Mue TS, Huang FW, Yang JH, Sheu JK.

Opt Express. 2011 Jun 20;19(13):12658-63. doi: 10.1364/OE.19.012658.

PMID:
21716508
43.

Skeletal muscle hemojuvelin is dispensable for systemic iron homeostasis.

Chen W, Huang FW, de Renshaw TB, Andrews NC.

Blood. 2011 Jun 9;117(23):6319-25. doi: 10.1182/blood-2010-12-327957. Epub 2011 Apr 14.

44.

Topology and prediction of RNA pseudoknots.

Reidys CM, Huang FW, Andersen JE, Penner RC, Stadler PF, Nebel ME.

Bioinformatics. 2011 Apr 15;27(8):1076-85. doi: 10.1093/bioinformatics/btr090. Epub 2011 Feb 17.

PMID:
21335320
45.

Poly(β-amino amine) cross-linked PEIs as highly efficient gene vectors.

Deng JZ, Sun YX, Wang HY, Li C, Huang FW, Cheng SX, Zhuo RX, Zhang XZ.

Acta Biomater. 2011 May;7(5):2200-8. doi: 10.1016/j.actbio.2011.02.003. Epub 2011 Feb 21.

PMID:
21300185
46.

Fabrication of lactobionic-loaded chitosan microcapsules as potential drug carriers targeting the liver.

Zhang J, Li C, Xue ZY, Cheng HW, Huang FW, Zhuo RX, Zhang XZ.

Acta Biomater. 2011 Apr;7(4):1665-73. doi: 10.1016/j.actbio.2010.11.042. Epub 2010 Dec 3.

PMID:
21130904
47.

PEGylated PEI-based biodegradable polymers as non-viral gene vectors.

Huang FW, Wang HY, Li C, Wang HF, Sun YX, Feng J, Zhang XZ, Zhuo RX.

Acta Biomater. 2010 Nov;6(11):4285-95. doi: 10.1016/j.actbio.2010.06.016. Epub 2010 Jun 18.

PMID:
20601231
48.

Facile fabrication of diblock methoxy poly(ethylene glycol)-poly(tetramethylene carbonate) and its self-assembled micelles as drug carriers.

Feng J, Su W, Wang HF, Huang FW, Zhang XZ, Zhuo RX.

ACS Appl Mater Interfaces. 2009 Dec;1(12):2729-37. doi: 10.1021/am900452c.

PMID:
20356150
49.

Self-Assembled Micelles Based on PEG-Polypeptide Hybrid Copolymers for Drug Delivery.

Hua SH, Li YY, Liu Y, Xiao W, Li C, Huang FW, Zhang XZ, Zhuo RX.

Macromol Rapid Commun. 2010 Jan 4;31(1):81-6. doi: 10.1002/marc.200900473. Epub 2009 Sep 24.

PMID:
21590841
50.

Folding 3-noncrossing RNA pseudoknot structures.

Huang FW, Peng WW, Reidys CM.

J Comput Biol. 2009 Nov;16(11):1549-75. doi: 10.1089/cmb.2008.0194.

PMID:
19958083

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