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Items: 26

1.

Inferring the presence of aflatoxin-producing Aspergillus flavus strains using RNA sequencing and electronic probes as a transcriptomic screening tool.

Espindola AS, Schneider W, Cardwell KF, Carrillo Y, Hoyt PR, Marek SM, Melouk HA, Garzon CD.

PLoS One. 2018 Oct 16;13(10):e0198575. doi: 10.1371/journal.pone.0198575. eCollection 2018.

2.

Combining Analysis of DNA in a Crude Virion Extraction with the Analysis of RNA from Infected Leaves to Discover New Virus Genomes.

Verchot J, Thapa A, Wijayasekara D, Hoyt PR.

J Vis Exp. 2018 Jul 27;(137). doi: 10.3791/57855.

3.

A new approach for detecting fungal and oomycete plant pathogens in next generation sequencing metagenome data utilising electronic probes.

Espindola A, Schneider W, Hoyt PR, Marek SM, Garzon C.

Int J Data Min Bioinform. 2015;12(2):115-28.

PMID:
26510298
4.

Draft Genome Sequence of Strain ATCC 33958, Reported To Be Elizabethkingia miricola.

Matyi SA, Hoyt PR, Ayoubi-Canaan P, Hasan NA, Gustafson JE.

Genome Announc. 2015 Jul 23;3(4). pii: e00828-15. doi: 10.1128/genomeA.00828-15.

5.

The genome of Diuraphis noxia, a global aphid pest of small grains.

Nicholson SJ, Nickerson ML, Dean M, Song Y, Hoyt PR, Rhee H, Kim C, Puterka GJ.

BMC Genomics. 2015 Jun 5;16:429. doi: 10.1186/s12864-015-1525-1.

6.

Draft Genome Sequences of Vancomycin-Susceptible Staphylococcus aureus Related to Heterogeneous Vancomycin-Intermediate S. aureus.

Ramaraj T, Matyi SA, Sundararajan A, Lindquist IE, Devitt NP, Schilkey FD, Lamichhane-Khadka R, Hoyt PR, Mudge J, Gustafson JE.

Genome Announc. 2014 Oct 9;2(5). pii: e01033-14. doi: 10.1128/genomeA.01033-14.

7.

Screening metagenomic data for viruses using the e-probe diagnostic nucleic acid assay.

Stobbe AH, Schneider WL, Hoyt PR, Melcher U.

Phytopathology. 2014 Oct;104(10):1125-9. doi: 10.1094/PHYTO-11-13-0310-R.

8.

Draft Genomes of Heterogeneous Vancomycin-Intermediate Staphylococcus aureus Strain MM66 and MM66 Derivatives with Altered Vancomycin Resistance Levels.

Matyi SA, Ramaraj T, Sundararajan A, Lindquist IE, Devitt NP, Schilkey FD, Lamichhane-Khadka R, Hoyt PR, Mudge J, Gustafson JE.

Genome Announc. 2014 Jul 10;2(4). pii: e00688-14. doi: 10.1128/genomeA.00688-14.

9.

Draft Genome Sequences of Elizabethkingia meningoseptica.

Matyi SA, Hoyt PR, Hosoyama A, Yamazoe A, Fujita N, Gustafson JE.

Genome Announc. 2013 Jul 11;1(4). pii: e00444-13. doi: 10.1128/genomeA.00444-13.

10.

Isolation and characterization of Staphylococcus aureus strains from a Paso del Norte dairy.

Matyi SA, Dupre JM, Johnson WL, Hoyt PR, White DG, Brody T, Odenwald WF, Gustafson JE.

J Dairy Sci. 2013 Jun;96(6):3535-42. doi: 10.3168/jds.2013-6590. Epub 2013 Apr 19.

11.

Inducible RNA interference-mediated gene silencing using nanostructured gene delivery arrays.

Mann DG, McKnight TE, McPherson JT, Hoyt PR, Melechko AV, Simpson ML, Sayler GS.

ACS Nano. 2008 Jan;2(1):69-76. doi: 10.1021/nn700198y.

PMID:
19206549
12.
13.

DNA microarrays detect 4-nonylphenol-induced alterations in gene expression during zebrafish early development.

Hoyt PR, Doktycz MJ, Beattie KL, Greeley MS Jr.

Ecotoxicology. 2003 Dec;12(6):469-74.

PMID:
14680326
14.

AFM imaging of bacteria in liquid media immobilized on gelatin coated mica surfaces.

Doktycz MJ, Sullivan CJ, Hoyt PR, Pelletier DA, Wu S, Allison DP.

Ultramicroscopy. 2003 Oct-Nov;97(1-4):209-16.

PMID:
12801673
15.

Automated high-throughput probe production for DNA microarray analysis.

Hoyt PR, Tack L, Jones BH, Van Dinther J, Staat S, Doktycz MJ.

Biotechniques. 2003 Feb;34(2):402-7.

16.

Spin-column isolation of DNA-protein interactions from complex protein mixtures for AFM imaging.

Hoyt PR, Doktycz MJ, Warmack RJ, Allison DP.

Ultramicroscopy. 2001 Jan;86(1-2):139-43.

PMID:
11215616
17.

Identifying sequence similarities between DNA molecules.

Hoyt PR, Doktycz MJ, Modrich P, Warmack RJ, Allison DP.

Ultramicroscopy. 2000 Feb;82(1-4):237-44.

PMID:
10741675
18.

The Evi1 proto-oncogene is required at midgestation for neural, heart, and paraxial mesenchyme development.

Hoyt PR, Bartholomew C, Davis AJ, Yutzey K, Gamer LW, Potter SS, Ihle JN, Mucenski ML.

Mech Dev. 1997 Jul;65(1-2):55-70.

19.

Mapping individual cosmid DNAs by direct AFM imaging.

Allison DP, Kerper PS, Doktycz MJ, Thundat T, Modrich P, Larimer FW, Johnson DK, Hoyt PR, Mucenski ML, Warmack RJ.

Genomics. 1997 May 1;41(3):379-84.

PMID:
9169135
20.

Interleukin-3 increases the incidence of 5-azacytidine-induced thymic lymphomas in pBOR-Il-3 mice.

Saavedra HI, Wang TH, Hoyt PR, Popp D, Yang WK, Stambrook PJ.

Cell Immunol. 1996 Oct 10;173(1):116-23. Erratum in: Cell Immunol 1996 Dec 15;174(2):210-1.

PMID:
8871607
23.

Derepression of a mouse alpha-fetoprotein expression vector in COS-1 cells by amplification of specific cis-acting sequences of the AFP promoter.

Rabek JP, Hoyt PR, Zhang DE, Izban MG, Papaconstantinou J.

Nucleic Acids Res. 1990 Nov 25;18(22):6677-82.

24.
25.

Localization of the L1Md family of repeated sequences in the mouse albumin-alpha-fetoprotein gene complex.

Cooper R, Herzog CE, Li ML, Zapisek WF, Hoyt PR, Ratrie H 3rd, Papaconstantinou J.

Nucleic Acids Res. 1984 Aug 24;12(16):6575-86.

26.

Competitive Dominance by a Bacteriocin-Producing Vibrio harveyi Strain.

Hoyt PR, Sizemore RK.

Appl Environ Microbiol. 1982 Sep;44(3):653-8.

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