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Items: 1 to 50 of 54

1.

Signatures of selection for bonamiosis resistance in European flat oyster (Ostrea edulis): New genomic tools for breeding programs and management of natural resources.

Vera M, Pardo BG, Cao A, Vilas R, Fernández C, Blanco A, Gutierrez AP, Bean TP, Houston RD, Villalba A, Martínez P.

Evol Appl. 2019 Jul 5;12(9):1781-1796. doi: 10.1111/eva.12832. eCollection 2019 Oct.

2.

Assessment of genetic diversity and population structure in cultured Australian Pacific oysters.

Kijas JW, Gutierrez AP, Houston RD, McWilliam S, Bean TP, Soyano K, Symonds JE, King N, Lind C, Kube P.

Anim Genet. 2019 Dec;50(6):686-694. doi: 10.1111/age.12845. Epub 2019 Sep 13.

PMID:
31518019
3.

Potential of Genome Editing to Improve Aquaculture Breeding and Production.

Gratacap RL, Wargelius A, Edvardsen RB, Houston RD.

Trends Genet. 2019 Sep;35(9):672-684. doi: 10.1016/j.tig.2019.06.006. Epub 2019 Jul 19. Review.

4.

Optimizing Genomic Prediction of Host Resistance to Koi Herpesvirus Disease in Carp.

Palaiokostas C, Vesely T, Kocour M, Prchal M, Pokorova D, Piackova V, Pojezdal L, Houston RD.

Front Genet. 2019 Jun 12;10:543. doi: 10.3389/fgene.2019.00543. eCollection 2019.

5.

Genetic differences in host infectivity affect disease spread and survival in epidemics.

Anacleto O, Cabaleiro S, Villanueva B, Saura M, Houston RD, Woolliams JA, Doeschl-Wilson AB.

Sci Rep. 2019 Mar 20;9(1):4924. doi: 10.1038/s41598-019-40567-w.

6.

Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas) revealed by genome-wide SNP data.

Vendrami DLJ, Houston RD, Gharbi K, Telesca L, Gutierrez AP, Gurney-Smith H, Hasegawa N, Boudry P, Hoffman JI.

Evol Appl. 2018 Dec 31;12(3):519-534. doi: 10.1111/eva.12736. eCollection 2019 Mar.

7.

Discovery and Functional Annotation of Quantitative Trait Loci Affecting Resistance to Sea Lice in Atlantic Salmon.

Robledo D, Gutiérrez AP, Barría A, Lhorente JP, Houston RD, Yáñez JM.

Front Genet. 2019 Feb 8;10:56. doi: 10.3389/fgene.2019.00056. eCollection 2019.

8.

Balancing selection at a premature stop mutation in the myostatin gene underlies a recessive leg weakness syndrome in pigs.

Matika O, Robledo D, Pong-Wong R, Bishop SC, Riggio V, Finlayson H, Lowe NR, Hoste AE, Walling GA, Del-Pozo J, Archibald AL, Woolliams JA, Houston RD.

PLoS Genet. 2019 Jan 30;15(1):e1007759. doi: 10.1371/journal.pgen.1007759. eCollection 2019 Jan.

9.

Expanding the miRNA Repertoire in Atlantic Salmon; Discovery of IsomiRs and miRNAs Highly Expressed in Different Tissues and Developmental Stages.

Woldemariam NT, Agafonov O, Høyheim B, Houston RD, Taggart JB, Andreassen R.

Cells. 2019 Jan 11;8(1). pii: E42. doi: 10.3390/cells8010042.

10.

Livestock 2.0 - genome editing for fitter, healthier, and more productive farmed animals.

Tait-Burkard C, Doeschl-Wilson A, McGrew MJ, Archibald AL, Sang HM, Houston RD, Whitelaw CB, Watson M.

Genome Biol. 2018 Nov 26;19(1):204. doi: 10.1186/s13059-018-1583-1. Review.

11.

Atlantic salmon (Salmo salar L.) genetics in the 21st century: taking leaps forward in aquaculture and biological understanding.

Houston RD, Macqueen DJ.

Anim Genet. 2019 Feb;50(1):3-14. doi: 10.1111/age.12748. Epub 2018 Nov 14. Review.

12.

SNP markers for the genetic characterization of Mexican shrimp broodstocks.

Perez-Enriquez R, Robledo D, Houston RD, Llera-Herrera R.

Genomics. 2018 Nov;110(6):423-429. doi: 10.1016/j.ygeno.2018.10.001. Epub 2018 Oct 9.

PMID:
30308223
13.

Genomic Selection for Growth Traits in Pacific Oyster (Crassostrea gigas): Potential of Low-Density Marker Panels for Breeding Value Prediction.

Gutierrez AP, Matika O, Bean TP, Houston RD.

Front Genet. 2018 Sep 19;9:391. doi: 10.3389/fgene.2018.00391. eCollection 2018.

14.

Mapping and Sequencing of a Significant Quantitative Trait Locus Affecting Resistance to Koi Herpesvirus in Common Carp.

Palaiokostas C, Robledo D, Vesely T, Prchal M, Pokorova D, Piackova V, Pojezdal L, Kocour M, Houston RD.

G3 (Bethesda). 2018 Nov 6;8(11):3507-3513. doi: 10.1534/g3.118.200593.

15.

Gene Expression Response to Sea Lice in Atlantic Salmon Skin: RNA Sequencing Comparison Between Resistant and Susceptible Animals.

Robledo D, Gutiérrez AP, Barría A, Yáñez JM, Houston RD.

Front Genet. 2018 Aug 3;9:287. doi: 10.3389/fgene.2018.00287. eCollection 2018.

16.

Genome-wide association and genomic prediction of resistance to viral nervous necrosis in European sea bass (Dicentrarchus labrax) using RAD sequencing.

Palaiokostas C, Cariou S, Bestin A, Bruant JS, Haffray P, Morin T, Cabon J, Allal F, Vandeputte M, Houston RD.

Genet Sel Evol. 2018 Jun 8;50(1):30. doi: 10.1186/s12711-018-0401-2.

17.

Accuracy of Genomic Evaluations of Juvenile Growth Rate in Common Carp (Cyprinus carpio) Using Genotyping by Sequencing.

Palaiokostas C, Kocour M, Prchal M, Houston RD.

Front Genet. 2018 Mar 13;9:82. doi: 10.3389/fgene.2018.00082. eCollection 2018.

18.

A Genome-Wide Association Study for Host Resistance to Ostreid Herpesvirus in Pacific Oysters (Crassostrea gigas).

Gutierrez AP, Bean TP, Hooper C, Stenton CA, Sanders MB, Paley RK, Rastas P, Bryrom M, Matika O, Houston RD.

G3 (Bethesda). 2018 Mar 28;8(4):1273-1280. doi: 10.1534/g3.118.200113.

19.

Genome-Wide Association and Genomic Selection for Resistance to Amoebic Gill Disease in Atlantic Salmon.

Robledo D, Matika O, Hamilton A, Houston RD.

G3 (Bethesda). 2018 Mar 28;8(4):1195-1203. doi: 10.1534/g3.118.200075.

20.

A candidate gene approach to study nematode resistance traits in naturally infected sheep.

Wilkie H, Riggio V, Matika O, Nicol L, Watt KA, Sinclair R, Sparks AM, Nussey DH, Pemberton JM, Houston RD, Hopkins J.

Vet Parasitol. 2017 Aug 30;243:71-74. doi: 10.1016/j.vetpar.2017.06.010. Epub 2017 Jun 10.

21.

Maternal inheritance of deltamethrin resistance in the salmon louse Lepeophtheirus salmonis (Krøyer) is associated with unique mtDNA haplotypes.

Carmona-Antoñanzas G, Bekaert M, Humble JL, Boyd S, Roy W, Bassett DI, Houston RD, Gharbi K, Bron JE, Sturm A.

PLoS One. 2017 Jul 12;12(7):e0180625. doi: 10.1371/journal.pone.0180625. eCollection 2017.

22.

Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.

Macqueen DJ, Primmer CR, Houston RD, Nowak BF, Bernatchez L, Bergseth S, Davidson WS, Gallardo-Escárate C, Goldammer T, Guiguen Y, Iturra P, Kijas JW, Koop BF, Lien S, Maass A, Martin SAM, McGinnity P, Montecino M, Naish KA, Nichols KM, Ólafsson K, Omholt SW, Palti Y, Plastow GS, Rexroad CE Rd, Rise ML, Ritchie RJ, Sandve SR, Schulte PM, Tello A, Vidal R, Vik JO, Wargelius A, Yáñez JM; FAASG Consortium.

BMC Genomics. 2017 Jun 27;18(1):484. doi: 10.1186/s12864-017-3862-8.

23.

Development of a Medium Density Combined-Species SNP Array for Pacific and European Oysters (Crassostrea gigas and Ostrea edulis).

Gutierrez AP, Turner F, Gharbi K, Talbot R, Lowe NR, Peñaloza C, McCullough M, Prodöhl PA, Bean TP, Houston RD.

G3 (Bethesda). 2017 Jul 5;7(7):2209-2218. doi: 10.1534/g3.117.041780.

24.

Genotype Imputation To Improve the Cost-Efficiency of Genomic Selection in Farmed Atlantic Salmon.

Tsai HY, Matika O, Edwards SM, Antolín-Sánchez R, Hamilton A, Guy DR, Tinch AE, Gharbi K, Stear MJ, Taggart JB, Bron JE, Hickey JM, Houston RD.

G3 (Bethesda). 2017 Apr 3;7(4):1377-1383. doi: 10.1534/g3.117.040717.

25.

High-resolution mapping of the recombination landscape of the phytopathogen Fusarium graminearum suggests two-speed genome evolution.

Laurent B, Palaiokostas C, Spataro C, Moinard M, Zehraoui E, Houston RD, Foulongne-Oriol M.

Mol Plant Pathol. 2018 Feb;19(2):341-354. doi: 10.1111/mpp.12524. Epub 2017 Feb 14.

26.

Genomic Prediction of Resistance to Pasteurellosis in Gilthead Sea Bream (Sparus aurata) Using 2b-RAD Sequencing.

Palaiokostas C, Ferraresso S, Franch R, Houston RD, Bargelloni L.

G3 (Bethesda). 2016 Nov 8;6(11):3693-3700. doi: 10.1534/g3.116.035220.

27.

Genomic prediction of host resistance to sea lice in farmed Atlantic salmon populations.

Tsai HY, Hamilton A, Tinch AE, Guy DR, Bron JE, Taggart JB, Gharbi K, Stear M, Matika O, Pong-Wong R, Bishop SC, Houston RD.

Genet Sel Evol. 2016 Jun 29;48(1):47. doi: 10.1186/s12711-016-0226-9.

28.

Construction and Annotation of a High Density SNP Linkage Map of the Atlantic Salmon (Salmo salar) Genome.

Tsai HY, Robledo D, Lowe NR, Bekaert M, Taggart JB, Bron JE, Houston RD.

G3 (Bethesda). 2016 Jul 7;6(7):2173-9. doi: 10.1534/g3.116.029009.

29.

Gene expression comparison of resistant and susceptible Atlantic salmon fry challenged with Infectious Pancreatic Necrosis virus reveals a marked contrast in immune response.

Robledo D, Taggart JB, Ireland JH, McAndrew BJ, Starkey WG, Haley CS, Hamilton A, Guy DR, Mota-Velasco JC, Gheyas AA, Tinch AE, Verner-Jeffreys DW, Paley RK, Rimmer GS, Tew IJ, Bishop SC, Bron JE, Houston RD.

BMC Genomics. 2016 Apr 11;17:279. doi: 10.1186/s12864-016-2600-y.

30.

Verification of SNPs Associated with Growth Traits in Two Populations of Farmed Atlantic Salmon.

Tsai HY, Hamilton A, Guy DR, Tinch AE, Bishop SC, Houston RD.

Int J Mol Sci. 2015 Dec 22;17(1). pii: E5. doi: 10.3390/ijms17010005.

31.

Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array.

Tsai HY, Hamilton A, Tinch AE, Guy DR, Gharbi K, Stear MJ, Matika O, Bishop SC, Houston RD.

BMC Genomics. 2015 Nov 18;16:969. doi: 10.1186/s12864-015-2117-9.

32.

Exploring the utility of cross-laboratory RAD-sequencing datasets for phylogenetic analysis.

Gonen S, Bishop SC, Houston RD.

BMC Res Notes. 2015 Jul 8;8:299. doi: 10.1186/s13104-015-1261-2.

33.

Mapping and validation of a major QTL affecting resistance to pancreas disease (salmonid alphavirus) in Atlantic salmon (Salmo salar).

Gonen S, Baranski M, Thorland I, Norris A, Grove H, Arnesen P, Bakke H, Lien S, Bishop SC, Houston RD.

Heredity (Edinb). 2015 Nov;115(5):405-14. doi: 10.1038/hdy.2015.37. Epub 2015 May 20.

34.

The genetic architecture of growth and fillet traits in farmed Atlantic salmon (Salmo salar).

Tsai HY, Hamilton A, Guy DR, Tinch AE, Bishop SC, Houston RD.

BMC Genet. 2015 May 19;16:51. doi: 10.1186/s12863-015-0215-y.

35.

Potential of genotyping-by-sequencing for genomic selection in livestock populations.

Gorjanc G, Cleveland MA, Houston RD, Hickey JM.

Genet Sel Evol. 2015 Mar 1;47:12. doi: 10.1186/s12711-015-0102-z.

36.

Genomics in aquaculture to better understand species biology and accelerate genetic progress.

Yáñez JM, Newman S, Houston RD.

Front Genet. 2015 Apr 1;6:128. doi: 10.3389/fgene.2015.00128. eCollection 2015. No abstract available.

37.

Genetics and genomics of disease resistance in salmonid species.

Yáñez JM, Houston RD, Newman S.

Front Genet. 2014 Nov 26;5:415. doi: 10.3389/fgene.2014.00415. eCollection 2014. Review.

38.

Single nucleotide polymorphisms in the insulin-like growth factor 1 (IGF1) gene are associated with growth-related traits in farmed Atlantic salmon.

Tsai HY, Hamilton A, Guy DR, Houston RD.

Anim Genet. 2014 Oct;45(5):709-15. doi: 10.1111/age.12202. Epub 2014 Aug 5.

39.

Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing.

Gonen S, Lowe NR, Cezard T, Gharbi K, Bishop SC, Houston RD.

BMC Genomics. 2014 Feb 27;15:166. doi: 10.1186/1471-2164-15-166.

40.

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar).

Houston RD, Taggart JB, Cézard T, Bekaert M, Lowe NR, Downing A, Talbot R, Bishop SC, Archibald AL, Bron JE, Penman DJ, Davassi A, Brew F, Tinch AE, Gharbi K, Hamilton A.

BMC Genomics. 2014 Feb 6;15:90. doi: 10.1186/1471-2164-15-90.

41.

A SNP in the 5' flanking region of the myostatin-1b gene is associated with harvest traits in Atlantic salmon (Salmo salar).

Peñaloza C, Hamilton A, Guy DR, Bishop SC, Houston RD.

BMC Genet. 2013 Nov 27;14:112. doi: 10.1186/1471-2156-14-112.

42.

Sequencing and characterisation of an extensive Atlantic salmon (Salmo salar L.) microRNA repertoire.

Bekaert M, Lowe NR, Bishop SC, Bron JE, Taggart JB, Houston RD.

PLoS One. 2013 Jul 29;8(7):e70136. doi: 10.1371/journal.pone.0070136. Print 2013.

43.

Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon.

Houston RD, Davey JW, Bishop SC, Lowe NR, Mota-Velasco JC, Hamilton A, Guy DR, Tinch AE, Thomson ML, Blaxter ML, Gharbi K, Bron JE, Taggart JB.

BMC Genomics. 2012 Jun 15;13:244. doi: 10.1186/1471-2164-13-244.

44.

Characterization of OAR1 and OAR18 QTL associated with muscle depth in British commercial terminal sire sheep.

Matika O, Sechi S, Pong-Wong R, Houston RD, Clop A, Woolliams JA, Bishop SC.

Anim Genet. 2011 Apr;42(2):172-80. doi: 10.1111/j.1365-2052.2010.02121.x. Epub 2010 Sep 30.

PMID:
20880338
45.

Heritability and mechanisms of n-3 long chain polyunsaturated fatty acid deposition in the flesh of Atlantic salmon.

Leaver MJ, Taggart JB, Villeneuve L, Bron JE, Guy DR, Bishop SC, Houston RD, Matika O, Tocher DR.

Comp Biochem Physiol Part D Genomics Proteomics. 2011 Mar;6(1):62-9. doi: 10.1016/j.cbd.2010.04.002. Epub 2010 Apr 14.

PMID:
20451480
46.

Segregation of infectious pancreatic necrosis resistance QTL in the early life cycle of Atlantic Salmon (Salmo salar).

Gheyas AA, Houston RD, Mota-Velasco JC, Guy DR, Tinch AE, Haley CS, Woolliams JA.

Anim Genet. 2010 Oct;41(5):531-6. doi: 10.1111/j.1365-2052.2010.02032.x.

PMID:
20331597
47.

The susceptibility of Atlantic salmon fry to freshwater infectious pancreatic necrosis is largely explained by a major QTL.

Houston RD, Haley CS, Hamilton A, Guy DR, Mota-Velasco JC, Gheyas AA, Tinch AE, Taggart JB, Bron JE, Starkey WG, McAndrew BJ, Verner-Jeffreys DW, Paley RK, Rimmer GS, Tew IJ, Bishop SC.

Heredity (Edinb). 2010 Sep;105(3):318-27. doi: 10.1038/hdy.2009.171. Epub 2009 Nov 25.

48.

Detection of QTL affecting harvest traits in a commercial Atlantic salmon population.

Houston RD, Bishop SC, Hamilton A, Guy DR, Tinch AE, Taggart JB, Derayat A, McAndrew BJ, Haley CS.

Anim Genet. 2009 Oct;40(5):753-5. doi: 10.1111/j.1365-2052.2009.01883.x. Epub 2009 Apr 16.

PMID:
19397515
49.

Detection and confirmation of a major QTL affecting resistance to infectious pancreatic necrosis (IPN) in Atlantic salmon (Salmo salar).

Houston RD, Gheyas A, Hamilton A, Guy DR, Tinch AE, Taggart JB, McAndrew BJ, Haley CS, Bishop SC.

Dev Biol (Basel). 2008;132:199-204. doi: 10.1159/000317160.

PMID:
18817302
50.

The cholecystokinin type A receptor g.179A>G polymorphism affects feeding rate.

Houston RD, Rance KA, Sutcliffe E, Archibald AL, Haley CS.

Anim Genet. 2008 Apr;39(2):187-8. doi: 10.1111/j.1365-2052.2007.01692.x. Epub 2008 Feb 6.

PMID:
18261188

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