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Items: 10

1.

A Guide to the Chloroplast Transcriptome Analysis Using RNA-Seq.

Michel EJS, Hotto AM, Strickler SR, Stern DB, Castandet B.

Methods Mol Biol. 2018;1829:295-313. doi: 10.1007/978-1-4939-8654-5_20.

PMID:
29987730
2.

ChloroSeq, an Optimized Chloroplast RNA-Seq Bioinformatic Pipeline, Reveals Remodeling of the Organellar Transcriptome Under Heat Stress.

Castandet B, Hotto AM, Strickler SR, Stern DB.

G3 (Bethesda). 2016 Sep 8;6(9):2817-27. doi: 10.1534/g3.116.030783.

3.

Arabidopsis chloroplast mini-ribonuclease III participates in rRNA maturation and intron recycling.

Hotto AM, Castandet B, Gilet L, Higdon A, Condon C, Stern DB.

Plant Cell. 2015 Mar;27(3):724-40. doi: 10.1105/tpc.114.134452. Epub 2015 Feb 27.

4.

Strand-specific RNA sequencing uncovers chloroplast ribonuclease functions.

Castandet B, Hotto AM, Fei Z, Stern DB.

FEBS Lett. 2013 Sep 17;587(18):3096-101. doi: 10.1016/j.febslet.2013.08.004. Epub 2013 Aug 14.

5.

RNA processing and decay in plastids.

Germain A, Hotto AM, Barkan A, Stern DB.

Wiley Interdiscip Rev RNA. 2013 May-Jun;4(3):295-316. doi: 10.1002/wrna.1161. Epub 2013 Mar 27. Review.

PMID:
23536311
6.

Plastid non-coding RNAs: emerging candidates for gene regulation.

Hotto AM, Germain A, Stern DB.

Trends Plant Sci. 2012 Dec;17(12):737-44. doi: 10.1016/j.tplants.2012.08.002. Epub 2012 Sep 13. Review.

PMID:
22981395
7.

Unexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of the Arabidopsis Transcriptome.

Hotto AM, Schmitz RJ, Fei Z, Ecker JR, Stern DB.

G3 (Bethesda). 2011 Dec;1(7):559-70. doi: 10.1534/g3.111.000752. Epub 2011 Dec 1.

8.

Overaccumulation of the chloroplast antisense RNA AS5 is correlated with decreased abundance of 5S rRNA in vivo and inefficient 5S rRNA maturation in vitro.

Sharwood RE, Hotto AM, Bollenbach TJ, Stern DB.

RNA. 2011 Feb;17(2):230-43. doi: 10.1261/rna.2336611. Epub 2010 Dec 9.

9.

Overexpression of a natural chloroplast-encoded antisense RNA in tobacco destabilizes 5S rRNA and retards plant growth.

Hotto AM, Huston ZE, Stern DB.

BMC Plant Biol. 2010 Sep 29;10:213. doi: 10.1186/1471-2229-10-213.

10.

Molecular characterization of potential microcystin-producing cyanobacteria in Lake Ontario embayments and nearshore waters.

Hotto AM, Satchwell MF, Boyer GL.

Appl Environ Microbiol. 2007 Jul;73(14):4570-8. Epub 2007 May 25.

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