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Items: 12


Bacterial adaptation through loss of function.

Hottes AK, Freddolino PL, Khare A, Donnell ZN, Liu JC, Tavazoie S.

PLoS Genet. 2013;9(7):e1003617. doi: 10.1371/journal.pgen.1003617. Epub 2013 Jul 11.


Fitness landscape of antibiotic tolerance in Pseudomonas aeruginosa biofilms.

Amini S, Hottes AK, Smith LE, Tavazoie S.

PLoS Pathog. 2011 Oct;7(10):e1002298. doi: 10.1371/journal.ppat.1002298. Epub 2011 Oct 20.


Microarray-based genetic footprinting strategy to identify strain improvement genes after competitive selection of transposon libraries.

Hottes AK, Tavazoie S.

Methods Mol Biol. 2011;765:83-97. doi: 10.1007/978-1-61779-197-0_6.


Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli.

Goodarzi H, Bennett BD, Amini S, Reaves ML, Hottes AK, Rabinowitz JD, Tavazoie S.

Mol Syst Biol. 2010 Jun 8;6:378. doi: 10.1038/msb.2010.33.


Protein occupancy landscape of a bacterial genome.

Vora T, Hottes AK, Tavazoie S.

Mol Cell. 2009 Jul 31;35(2):247-53. doi: 10.1016/j.molcel.2009.06.035.


Global discovery of adaptive mutations.

Goodarzi H, Hottes AK, Tavazoie S.

Nat Methods. 2009 Aug;6(8):581-3. doi: 10.1038/nmeth.1352. Epub 2009 Jul 13.


Genetic architecture of intrinsic antibiotic susceptibility.

Girgis HS, Hottes AK, Tavazoie S.

PLoS One. 2009 May 20;4(5):e5629. doi: 10.1371/journal.pone.0005629.


High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons.

McGrath PT, Lee H, Zhang L, Iniesta AA, Hottes AK, Tan MH, Hillson NJ, Hu P, Shapiro L, McAdams HH.

Nat Biotechnol. 2007 May;25(5):584-92. Epub 2007 Apr 1.


Cytokinesis signals truncation of the PodJ polarity factor by a cell cycle-regulated protease.

Chen JC, Hottes AK, McAdams HH, McGrath PT, Viollier PH, Shapiro L.

EMBO J. 2006 Jan 25;25(2):377-86. Epub 2006 Jan 5.


DnaA coordinates replication initiation and cell cycle transcription in Caulobacter crescentus.

Hottes AK, Shapiro L, McAdams HH.

Mol Microbiol. 2005 Dec;58(5):1340-53.


Codon usage between genomes is constrained by genome-wide mutational processes.

Chen SL, Lee W, Hottes AK, Shapiro L, McAdams HH.

Proc Natl Acad Sci U S A. 2004 Mar 9;101(10):3480-5. Epub 2004 Feb 27.


Transcriptional profiling of Caulobacter crescentus during growth on complex and minimal media.

Hottes AK, Meewan M, Yang D, Arana N, Romero P, McAdams HH, Stephens C.

J Bacteriol. 2004 Mar;186(5):1448-61.

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