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Items: 31

1.

StackDPPred: A Stacking based Prediction of DNA-binding Protein from Sequence.

Mishra A, Pokhrel P, Hoque MT.

Bioinformatics. 2018 Jul 19. doi: 10.1093/bioinformatics/bty653. [Epub ahead of print]

PMID:
30032213
2.

PBRpredict-Suite: a suite of models to predict peptide-recognition domain residues from protein sequence.

Iqbal S, Hoque MT.

Bioinformatics. 2018 Oct 1;34(19):3289-3299. doi: 10.1093/bioinformatics/bty352.

PMID:
29726965
3.

Xenobiotic Nuclear Receptors Pregnane X Receptor and Constitutive Androstane Receptor Regulate Antiretroviral Drug Efflux Transporters at the Blood-Testis Barrier.

Whyte-Allman SK, Hoque MT, Jenabian MA, Routy JP, Bendayan R.

J Pharmacol Exp Ther. 2017 Dec;363(3):324-335. doi: 10.1124/jpet.117.243584. Epub 2017 Sep 28.

PMID:
28970358
4.

Peroxisome proliferator-activated receptor-gamma: potential molecular therapeutic target for HIV-1-associated brain inflammation.

Omeragic A, Hoque MT, Choi UY, Bendayan R.

J Neuroinflammation. 2017 Sep 8;14(1):183. doi: 10.1186/s12974-017-0957-8.

5.

Regulation of Reduced Folate Carrier (RFC) by Vitamin D Receptor at the Blood-Brain Barrier.

Alam C, Hoque MT, Finnell RH, Goldman ID, Bendayan R.

Mol Pharm. 2017 Nov 6;14(11):3848-3858. doi: 10.1021/acs.molpharmaceut.7b00572. Epub 2017 Sep 26.

PMID:
28885847
6.

Estimation of Position Specific Energy as a Feature of Protein Residues from Sequence Alone for Structural Classification.

Iqbal S, Hoque MT.

PLoS One. 2016 Sep 2;11(9):e0161452. doi: 10.1371/journal.pone.0161452. eCollection 2016.

7.

Antiretroviral drug transporters and metabolic enzymes in human testicular tissue: potential contribution to HIV-1 sanctuary site.

Huang Y, Hoque MT, Jenabian MA, Vyboh K, Whyte SK, Sheehan NL, Brassard P, Bélanger M, Chomont N, Fletcher CV, Routy JP, Bendayan R.

J Antimicrob Chemother. 2016 Jul;71(7):1954-65. doi: 10.1093/jac/dkw046. Epub 2016 Apr 13.

8.

Discriminate protein decoys from native by using a scoring function based on ubiquitous Phi and Psi angles computed for all atom.

Mishra A, Iqbal S, Hoque MT.

J Theor Biol. 2016 Jun 7;398:112-21. doi: 10.1016/j.jtbi.2016.03.029. Epub 2016 Mar 28.

PMID:
27029514
9.

HIV-1 Alters Intestinal Expression of Drug Transporters and Metabolic Enzymes: Implications for Antiretroviral Drug Disposition.

Kis O, Sankaran-Walters S, Hoque MT, Walmsley SL, Dandekar S, Bendayan R.

Antimicrob Agents Chemother. 2016 Apr 22;60(5):2771-81. doi: 10.1128/AAC.02278-15. Print 2016 May.

10.

Guided macro-mutation in a graded energy based genetic algorithm for protein structure prediction.

Rashid MA, Iqbal S, Khatib F, Hoque MT, Sattar A.

Comput Biol Chem. 2016 Apr;61:162-77. doi: 10.1016/j.compbiolchem.2016.01.008. Epub 2016 Feb 15.

PMID:
26878130
11.

sDFIRE: Sequence-specific statistical energy function for protein structure prediction by decoy selections.

Hoque MT, Yang Y, Mishra A, Zhou Y.

J Comput Chem. 2016 May 5;37(12):1119-24. doi: 10.1002/jcc.24298. Epub 2016 Feb 5.

PMID:
26849026
12.

DisPredict: A Predictor of Disordered Protein Using Optimized RBF Kernel.

Iqbal S, Hoque MT.

PLoS One. 2015 Oct 30;10(10):e0141551. doi: 10.1371/journal.pone.0141551. eCollection 2015.

13.

In vivo and ex vivo regulation of breast cancer resistant protein (Bcrp) by peroxisome proliferator-activated receptor alpha (Pparα) at the blood-brain barrier.

Hoque MT, Shah A, More V, Miller DS, Bendayan R.

J Neurochem. 2015 Dec;135(6):1113-22. doi: 10.1111/jnc.13389. Epub 2015 Nov 13.

14.

Improved prediction of accessible surface area results in efficient energy function application.

Iqbal S, Mishra A, Hoque MT.

J Theor Biol. 2015 Sep 7;380:380-91. doi: 10.1016/j.jtbi.2015.06.012. Epub 2015 Jun 17.

PMID:
26092374
15.

Raltegravir permeability across blood-tissue barriers and the potential role of drug efflux transporters.

Hoque MT, Kis O, De Rosa MF, Bendayan R.

Antimicrob Agents Chemother. 2015 May;59(5):2572-82. doi: 10.1128/AAC.04594-14. Epub 2015 Feb 17.

16.

Role of anti-inflammatory compounds in human immunodeficiency virus-1 glycoprotein120-mediated brain inflammation.

Ashraf T, Jiang W, Hoque MT, Henderson J, Wu C, Bendayan R.

J Neuroinflammation. 2014 May 16;11:91. doi: 10.1186/1742-2094-11-91.

17.

A Parallel Framework for Multipoint Spiral Search in ab Initio Protein Structure Prediction.

Rashid MA, Shatabda S, Newton MA, Hoque MT, Sattar A.

Adv Bioinformatics. 2014;2014:985968. doi: 10.1155/2014/985968. Epub 2014 Mar 16.

18.

Expression of ATP-binding cassette membrane transporters in a HIV-1 transgenic rat model.

Robillard KR, Hoque MT, Bendayan R.

Biochem Biophys Res Commun. 2014 Feb 21;444(4):531-6. doi: 10.1016/j.bbrc.2014.01.092. Epub 2014 Jan 25.

PMID:
24472536
19.

PCaAnalyser: a 2D-image analysis based module for effective determination of prostate cancer progression in 3D culture.

Hoque MT, Windus LC, Lovitt CJ, Avery VM.

PLoS One. 2013 Nov 20;8(11):e79865. doi: 10.1371/journal.pone.0079865. eCollection 2013.

20.

Mixing energy models in genetic algorithms for on-lattice protein structure prediction.

Rashid MA, Newton MA, Hoque MT, Sattar A.

Biomed Res Int. 2013;2013:924137. doi: 10.1155/2013/924137. Epub 2013 Sep 25.

21.

Expression of membrane drug efflux transporters in the sigmoid colon of HIV-infected and uninfected men.

De Rosa MF, Robillard KR, Kim CJ, Hoque MT, Kandel G, Kovacs C, Kaul R, Bendayan R.

J Clin Pharmacol. 2013 Sep;53(9):934-45. doi: 10.1002/jcph.132. Epub 2013 Jul 15.

PMID:
23856938
22.

Role of nuclear receptors in the regulation of drug transporters in the brain.

Chan GN, Hoque MT, Bendayan R.

Trends Pharmacol Sci. 2013 Jul;34(7):361-72. doi: 10.1016/j.tips.2013.05.004. Epub 2013 Jun 13. Review.

PMID:
23769624
23.

Spiral search: a hydrophobic-core directed local search for simplified PSP on 3D FCC lattice.

Rashid MA, Newton MA, Hoque MT, Shatabda S, Pham DN, Sattar A.

BMC Bioinformatics. 2013;14 Suppl 2:S16. doi: 10.1186/1471-2105-14-S2-S16. Epub 2013 Jan 21.

24.

Role of drug efflux and uptake transporters in atazanavir intestinal permeability and drug-drug interactions.

Kis O, Zastre JA, Hoque MT, Walmsley SL, Bendayan R.

Pharm Res. 2013 Apr;30(4):1050-64. doi: 10.1007/s11095-012-0942-y. Epub 2012 Dec 7.

PMID:
23224979
25.

Regulation of breast cancer resistant protein by peroxisome proliferator-activated receptor α in human brain microvessel endothelial cells.

Hoque MT, Robillard KR, Bendayan R.

Mol Pharmacol. 2012 Apr;81(4):598-609. doi: 10.1124/mol.111.076745. Epub 2012 Jan 19.

26.

Regulation of P-glycoprotein by orphan nuclear receptors in human brain microvessel endothelial cells.

Chan GN, Hoque MT, Cummins CL, Bendayan R.

J Neurochem. 2011 Jul;118(2):163-75. doi: 10.1111/j.1471-4159.2011.07288.x. Epub 2011 May 25.

27.

Twin removal in genetic algorithms for protein structure prediction using low-resolution model.

Hoque MT, Chetty M, Lewis A, Sattar A.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Jan-Mar;8(1):234-45. doi: 10.1109/TCBB.2009.34.

PMID:
21071811
28.

Involvement of NHERF1 in apical membrane localization of MRP4 in polarized kidney cells.

Hoque MT, Conseil G, Cole SP.

Biochem Biophys Res Commun. 2009 Jan 30;379(1):60-4. doi: 10.1016/j.bbrc.2008.12.014. Epub 2008 Dec 13.

PMID:
19073137
29.

Down-regulation of Na+/H+ exchanger regulatory factor 1 increases expression and function of multidrug resistance protein 4.

Hoque MT, Cole SP.

Cancer Res. 2008 Jun 15;68(12):4802-9. doi: 10.1158/0008-5472.CAN-07-6778.

30.
31.

Human chromatid cohesin component hRad21 is phosphorylated in M phase and associated with metaphase centromeres.

Hoque MT, Ishikawa F.

J Biol Chem. 2001 Feb 16;276(7):5059-67. Epub 2000 Nov 9.

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