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Items: 35

1.

Prediction of regulatory motifs from human Chip-sequencing data using a deep learning framework.

Yang J, Ma A, Hoppe AD, Wang C, Li Y, Zhang C, Wang Y, Liu B, Ma Q.

Nucleic Acids Res. 2019 Sep 5;47(15):7809-7824. doi: 10.1093/nar/gkz672.

2.

Generation of a CLTA reporter human induced pluripotent stem cell line, CRMi001-A-1, using the CRISPR/Cas9 system to monitor endogenous clathrin trafficking.

Anderson RH, Kerkvliet JG, Otta JJ, Ross AD, Leiferman PC, Hoppe AD, Francis KR.

Stem Cell Res. 2018 Dec;33:95-99. doi: 10.1016/j.scr.2018.10.001. Epub 2018 Oct 3.

3.

FRETting about the affinity of bimolecular protein-protein interactions.

Lin T, Scott BL, Hoppe AD, Chakravarty S.

Protein Sci. 2018 Oct;27(10):1850-1856. doi: 10.1002/pro.3482.

4.

Membrane bending occurs at all stages of clathrin-coat assembly and defines endocytic dynamics.

Scott BL, Sochacki KA, Low-Nam ST, Bailey EM, Luu Q, Hor A, Dickey AM, Smith S, Kerkvliet JG, Taraska JW, Hoppe AD.

Nat Commun. 2018 Jan 29;9(1):419. doi: 10.1038/s41467-018-02818-8.

5.

Both cytopathic and non-cytopathic bovine viral diarrhea virus (BVDV) induced autophagy at a similar rate.

Rajput MKS, Abdelsalam K, Darweesh MF, Braun LJ, Kerkvliet J, Hoppe AD, Chase CCL.

Vet Immunol Immunopathol. 2017 Dec;193-194:1-9. doi: 10.1016/j.vetimm.2017.09.006. Epub 2017 Oct 2.

PMID:
29129222
6.

Corrigendum to CSF-1 receptor signalling is governed by pre-requisite EHD1 mediated receptor display on the macrophage cell surface [Cell Signalling 2016 Sep.; 28(9): 1325-35].

Cypher LR, Bielecki TA, Huang L, An W, Iseka F, Tom E, Storck MD, Hoppe AD, Band V, Band H.

Cell Signal. 2016 Dec;28(12):1933. doi: 10.1016/j.cellsig.2016.07.018. Epub 2016 Aug 7. No abstract available.

7.

CSF-1 receptor signalling is governed by pre-requisite EHD1 mediated receptor display on the macrophage cell surface.

Cypher LR, Bielecki TA, Adepegba O, Huang L, An W, Iseka F, Luan H, Tom E, Storck MD, Hoppe AD, Band V, Band H.

Cell Signal. 2016 Sep;28(9):1325-35. doi: 10.1016/j.cellsig.2016.05.013. Epub 2016 May 17. Erratum in: Cell Signal. 2016 Dec;28(12):1933.

8.

Three-Dimensional Reconstruction of Three-Way FRET Microscopy Improves Imaging of Multiple Protein-Protein Interactions.

Scott BL, Hoppe AD.

PLoS One. 2016 Mar 29;11(3):e0152401. doi: 10.1371/journal.pone.0152401. eCollection 2016.

9.

TIRF imaging of Fc gamma receptor microclusters dynamics and signaling on macrophages during frustrated phagocytosis.

Lin J, Kurilova S, Scott BL, Bosworth E, Iverson BE, Bailey EM, Hoppe AD.

BMC Immunol. 2016 Mar 12;17:5. doi: 10.1186/s12865-016-0143-2.

10.
11.

Delivery of CSF-1R to the lumen of macropinosomes promotes its destruction in macrophages.

Lou J, Low-Nam ST, Kerkvliet JG, Hoppe AD.

J Cell Sci. 2014 Dec 15;127(Pt 24):5228-39. doi: 10.1242/jcs.154393. Epub 2014 Oct 21.

12.

Genomic and evolutionary characterization of a novel influenza-C-like virus from swine.

Sheng Z, Ran Z, Wang D, Hoppe AD, Simonson R, Chakravarty S, Hause BM, Li F.

Arch Virol. 2014 Feb;159(2):249-55. doi: 10.1007/s00705-013-1815-3. Epub 2013 Aug 13.

13.

N-way FRET microscopy of multiple protein-protein interactions in live cells.

Hoppe AD, Scott BL, Welliver TP, Straight SW, Swanson JA.

PLoS One. 2013 Jun 6;8(6):e64760. doi: 10.1371/journal.pone.0064760. Print 2013.

14.

Uniform total internal reflection fluorescence illumination enables live cell fluorescence resonance energy transfer microscopy.

Lin J, Hoppe AD.

Microsc Microanal. 2013 Apr;19(2):350-9. doi: 10.1017/S1431927612014420. Epub 2013 Mar 11.

PMID:
23472941
15.

Isolation of a novel swine influenza virus from Oklahoma in 2011 which is distantly related to human influenza C viruses.

Hause BM, Ducatez M, Collin EA, Ran Z, Liu R, Sheng Z, Armien A, Kaplan B, Chakravarty S, Hoppe AD, Webby RJ, Simonson RR, Li F.

PLoS Pathog. 2013 Feb;9(2):e1003176. doi: 10.1371/journal.ppat.1003176. Epub 2013 Feb 7.

16.

Pulse-shaping multiphoton FRET microscopy.

Brenner MH, Cai D, Nichols SR, Straight SW, Hoppe AD, Swanson JA, Ogilvie JP.

Proc SPIE Int Soc Opt Eng. 2012 Jan 1;8226. pii: 82260R. Epub 2012 Feb 15.

17.

FRET-based imaging of Rac and Cdc42 activation during Fc-receptor-mediated phagocytosis in macrophages.

Hoppe AD.

Methods Mol Biol. 2012;827:235-51. doi: 10.1007/978-1-61779-442-1_16.

PMID:
22144279
18.

Coordination of Fc receptor signaling regulates cellular commitment to phagocytosis.

Zhang Y, Hoppe AD, Swanson JA.

Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19332-7. doi: 10.1073/pnas.1008248107. Epub 2010 Oct 25.

19.

Abnormal interaction of motor neuropathy-associated mutant HspB8 (Hsp22) forms with the RNA helicase Ddx20 (gemin3).

Sun X, Fontaine JM, Hoppe AD, Carra S, DeGuzman C, Martin JL, Simon S, Vicart P, Welsh MJ, Landry J, Benndorf R.

Cell Stress Chaperones. 2010 Sep;15(5):567-82. doi: 10.1007/s12192-010-0169-y. Epub 2010 Feb 17.

20.

A Cdc42 activation cycle coordinated by PI 3-kinase during Fc receptor-mediated phagocytosis.

Beemiller P, Zhang Y, Mohan S, Levinsohn E, Gaeta I, Hoppe AD, Swanson JA.

Mol Biol Cell. 2010 Feb 1;21(3):470-80. doi: 10.1091/mbc.E08-05-0494. Epub 2009 Dec 2.

21.

A computational approach to inferring cellular protein-binding affinities from quantitative fluorescence resonance energy transfer imaging.

Mehta K, Hoppe AD, Kainkaryam R, Woolf PJ, Linderman JJ.

Proteomics. 2009 Dec;9(23):5371-83. doi: 10.1002/pmic.200800494.

22.

Sequential signaling in plasma-membrane domains during macropinosome formation in macrophages.

Yoshida S, Hoppe AD, Araki N, Swanson JA.

J Cell Sci. 2009 Sep 15;122(Pt 18):3250-61. doi: 10.1242/jcs.053207. Epub 2009 Aug 18.

23.

Live cell fluorescence microscopy to study microbial pathogenesis.

Hoppe AD, Seveau S, Swanson JA.

Cell Microbiol. 2009 Apr;11(4):540-50. doi: 10.1111/j.1462-5822.2009.01283.x. Epub 2009 Jan 5. Review.

24.

Three-dimensional FRET reconstruction microscopy for analysis of dynamic molecular interactions in live cells.

Hoppe AD, Shorte SL, Swanson JA, Heintzmann R.

Biophys J. 2008 Jul;95(1):400-18. doi: 10.1529/biophysj.107.125385. Epub 2008 Mar 13.

25.

Arp2 links autophagic machinery with the actin cytoskeleton.

Monastyrska I, He C, Geng J, Hoppe AD, Li Z, Klionsky DJ.

Mol Biol Cell. 2008 May;19(5):1962-75. doi: 10.1091/mbc.E07-09-0892. Epub 2008 Feb 20.

26.

Myopathy-associated alphaB-crystallin mutants: abnormal phosphorylation, intracellular location, and interactions with other small heat shock proteins.

Simon S, Fontaine JM, Martin JL, Sun X, Hoppe AD, Welsh MJ, Benndorf R, Vicart P.

J Biol Chem. 2007 Nov 23;282(47):34276-87. Epub 2007 Sep 25.

27.

Kinesin-1 structural organization and conformational changes revealed by FRET stoichiometry in live cells.

Cai D, Hoppe AD, Swanson JA, Verhey KJ.

J Cell Biol. 2007 Jan 1;176(1):51-63.

28.

A FRET analysis to unravel the role of cholesterol in Rac1 and PI 3-kinase activation in the InlB/Met signalling pathway.

Seveau S, Tham TN, Payrastre B, Hoppe AD, Swanson JA, Cossart P.

Cell Microbiol. 2007 Mar;9(3):790-803. Epub 2006 Nov 28.

29.

Abnormal small heat shock protein interactions involving neuropathy-associated HSP22 (HSPB8) mutants.

Fontaine JM, Sun X, Hoppe AD, Simon S, Vicart P, Welsh MJ, Benndorf R.

FASEB J. 2006 Oct;20(12):2168-70. Epub 2006 Aug 25.

PMID:
16935933
30.
31.

Membrane perforations inhibit lysosome fusion by altering pH and calcium in Listeria monocytogenes vacuoles.

Shaughnessy LM, Hoppe AD, Christensen KA, Swanson JA.

Cell Microbiol. 2006 May;8(5):781-92.

32.

The coordination of signaling during Fc receptor-mediated phagocytosis.

Swanson JA, Hoppe AD.

J Leukoc Biol. 2004 Dec;76(6):1093-103. Epub 2004 Oct 5. Review.

33.

Polarized fluorescence resonance energy transfer microscopy.

Mattheyses AL, Hoppe AD, Axelrod D.

Biophys J. 2004 Oct;87(4):2787-97.

34.

Cdc42, Rac1, and Rac2 display distinct patterns of activation during phagocytosis.

Hoppe AD, Swanson JA.

Mol Biol Cell. 2004 Aug;15(8):3509-19. Epub 2004 May 28.

35.

The uniformity of phagosome maturation in macrophages.

Henry RM, Hoppe AD, Joshi N, Swanson JA.

J Cell Biol. 2004 Jan 19;164(2):185-94. Epub 2004 Jan 12.

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