Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 63

1.

The EVcouplings Python framework for coevolutionary sequence analysis.

Hopf TA, Green AG, Schubert B, Mersmann S, Schärfe CPI, Ingraham JB, Toth-Petroczy A, Brock K, Riesselman AJ, Palmedo P, Kang C, Sheridan R, Draizen EJ, Dallago C, Sander C, Marks DS.

Bioinformatics. 2018 Oct 9. doi: 10.1093/bioinformatics/bty862. [Epub ahead of print]

PMID:
30304492
2.

Major effects on blood-retina barrier passage by minor alterations in design of polybutylcyanoacrylate nanoparticles.

You Q, Hopf T, Hintz W, Rannabauer S, Voigt N, van Wachem B, Henrich-Noack P, Sabel BA.

J Drug Target. 2018 Nov 26:1-9. doi: 10.1080/1061186X.2018.1531416. [Epub ahead of print]

PMID:
30280953
3.

A Systematic p53 Mutation Library Links Differential Functional Impact to Cancer Mutation Pattern and Evolutionary Conservation.

Kotler E, Shani O, Goldfeld G, Lotan-Pompan M, Tarcic O, Gershoni A, Hopf TA, Marks DS, Oren M, Segal E.

Mol Cell. 2018 Sep 6;71(5):873. doi: 10.1016/j.molcel.2018.08.013. No abstract available.

4.

Evolutionary couplings and sequence variation effect predict protein binding sites.

Schelling M, Hopf TA, Rost B.

Proteins. 2018 Oct;86(10):1064-1074. doi: 10.1002/prot.25585. Epub 2018 Oct 22.

PMID:
30020551
5.

A Systematic p53 Mutation Library Links Differential Functional Impact to Cancer Mutation Pattern and Evolutionary Conservation.

Kotler E, Shani O, Goldfeld G, Lotan-Pompan M, Tarcic O, Gershoni A, Hopf TA, Marks DS, Oren M, Segal E.

Mol Cell. 2018 Jul 5;71(1):178-190.e8. doi: 10.1016/j.molcel.2018.06.012. Erratum in: Mol Cell. 2018 Sep 6;71(5):873.

PMID:
29979965
6.

Structure of the peptidoglycan polymerase RodA resolved by evolutionary coupling analysis.

Sjodt M, Brock K, Dobihal G, Rohs PDA, Green AG, Hopf TA, Meeske AJ, Srisuknimit V, Kahne D, Walker S, Marks DS, Bernhardt TG, Rudner DZ, Kruse AC.

Nature. 2018 Apr 5;556(7699):118-121. doi: 10.1038/nature25985. Epub 2018 Mar 28.

7.

Population-specific design of de-immunized protein biotherapeutics.

Schubert B, Schärfe C, Dönnes P, Hopf T, Marks D, Kohlbacher O.

PLoS Comput Biol. 2018 Mar 2;14(3):e1005983. doi: 10.1371/journal.pcbi.1005983. eCollection 2018 Mar.

8.

Mutation effects predicted from sequence co-variation.

Hopf TA, Ingraham JB, Poelwijk FJ, Schärfe CP, Springer M, Sander C, Marks DS.

Nat Biotechnol. 2017 Feb;35(2):128-135. doi: 10.1038/nbt.3769. Epub 2017 Jan 16.

9.

Structured States of Disordered Proteins from Genomic Sequences.

Toth-Petroczy A, Palmedo P, Ingraham J, Hopf TA, Berger B, Sander C, Marks DS.

Cell. 2016 Sep 22;167(1):158-170.e12. doi: 10.1016/j.cell.2016.09.010.

10.

Protein structure determination by combining sparse NMR data with evolutionary couplings.

Tang Y, Huang YJ, Hopf TA, Sander C, Marks DS, Montelione GT.

Nat Methods. 2015 Aug;12(8):751-4. doi: 10.1038/nmeth.3455. Epub 2015 Jun 29.

11.

Amino acid coevolution reveals three-dimensional structure and functional domains of insect odorant receptors.

Hopf TA, Morinaga S, Ihara S, Touhara K, Marks DS, Benton R.

Nat Commun. 2015 Jan 13;6:6077. doi: 10.1038/ncomms7077.

12.

Sequence co-evolution gives 3D contacts and structures of protein complexes.

Hopf TA, Schärfe CP, Rodrigues JP, Green AG, Kohlbacher O, Sander C, Bonvin AM, Marks DS.

Elife. 2014 Sep 25;3. doi: 10.7554/eLife.03430.

13.

FreeContact: fast and free software for protein contact prediction from residue co-evolution.

Kaján L, Hopf TA, Kalaš M, Marks DS, Rost B.

BMC Bioinformatics. 2014 Mar 26;15:85. doi: 10.1186/1471-2105-15-85.

14.

Homology-based inference sets the bar high for protein function prediction.

Hamp T, Kassner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Rost B.

BMC Bioinformatics. 2013;14 Suppl 3:S7. doi: 10.1186/1471-2105-14-S3-S7. Epub 2013 Feb 28.

15.

A large-scale evaluation of computational protein function prediction.

Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, Piovesan D, Casadio R, Wang Z, Cheng J, Fang H, Gough J, Koskinen P, Törönen P, Nokso-Koivisto J, Holm L, Cozzetto D, Buchan DW, Bryson K, Jones DT, Limaye B, Inamdar H, Datta A, Manjari SK, Joshi R, Chitale M, Kihara D, Lisewski AM, Erdin S, Venner E, Lichtarge O, Rentzsch R, Yang H, Romero AE, Bhat P, Paccanaro A, Hamp T, Kaßner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Björne J, Salakoski T, Wong A, Shatkay H, Gatzmann F, Sommer I, Wass MN, Sternberg MJ, Škunca N, Supek F, Bošnjak M, Panov P, Džeroski S, Šmuc T, Kourmpetis YA, van Dijk AD, ter Braak CJ, Zhou Y, Gong Q, Dong X, Tian W, Falda M, Fontana P, Lavezzo E, Di Camillo B, Toppo S, Lan L, Djuric N, Guo Y, Vucetic S, Bairoch A, Linial M, Babbitt PC, Brenner SE, Orengo C, Rost B, Mooney SD, Friedberg I.

Nat Methods. 2013 Mar;10(3):221-7. doi: 10.1038/nmeth.2340. Epub 2013 Jan 27.

16.

Protein structure prediction from sequence variation.

Marks DS, Hopf TA, Sander C.

Nat Biotechnol. 2012 Nov;30(11):1072-80. doi: 10.1038/nbt.2419.

17.

Three-dimensional structures of membrane proteins from genomic sequencing.

Hopf TA, Colwell LJ, Sheridan R, Rost B, Sander C, Marks DS.

Cell. 2012 Jun 22;149(7):1607-21. doi: 10.1016/j.cell.2012.04.012. Epub 2012 May 10.

18.

Protein 3D structure computed from evolutionary sequence variation.

Marks DS, Colwell LJ, Sheridan R, Hopf TA, Pagnani A, Zecchina R, Sander C.

PLoS One. 2011;6(12):e28766. doi: 10.1371/journal.pone.0028766. Epub 2011 Dec 7.

19.

Size-controlled synthesis and gas sensing application of tungsten oxide nanostructures produced by arc discharge.

Fang F, Kennedy J, Futter J, Hopf T, Markwitz A, Manikandan E, Henshaw G.

Nanotechnology. 2011 Aug 19;22(33):335702. doi: 10.1088/0957-4484/22/33/335702. Epub 2011 Jul 22.

PMID:
21778569
20.

Ordered array of self-assembled SiC nanocrystals fabricated by selective oxide desorption and nanosphere lithography.

Hopf T, Leveneur J, Markwitz A.

Nanotechnology. 2010 Dec 10;21(49):495302. doi: 10.1088/0957-4484/21/49/495302. Epub 2010 Nov 11.

PMID:
21071823
21.

[Applications of molecular pathology in the diagnosis of joint infections].

Kriegsmann J, Hopf T, Jacobs D, Arens N, Krenn V, Schmitt-Wiedhoff R, Kriegsmann M, Heisel C, Biehl C, Thabe H, Schmitz RP, Lehmann M, Otto M.

Orthopade. 2009 Jun;38(6):531-8. doi: 10.1007/s00132-008-1394-2. Review. German.

PMID:
19455307
22.

[Histopathologic diagnostics in endoprosthetics: periprosthetic neosynovialitis, hypersensitivity reaction, and arthrofibrosis].

Krenn V, Otto M, Morawietz L, Hopf T, Jakobs M, Klauser W, Schwantes B, Gehrke T.

Orthopade. 2009 Jun;38(6):520-30. doi: 10.1007/s00132-008-1400-8. Review. German.

PMID:
19448983
23.

[Synovitis score: value of histopathological diagnostics in unclear arthritis. Case reports from rheumatological pathological practice].

Jakobs M, Morawietz L, Rothschenk H, Hopf T, Weiner S, Schausten H, Krukemeyer MG, Krenn V.

Z Rheumatol. 2007 Dec;66(8):706-12. German.

PMID:
18000669
24.

Monostotic lumbar manifestation of fibrous dysplasia--a rare entity.

Hertel F, Hopf T, Feiden W, Bettag M, Walter C, Delling G.

Acta Neurochir (Wien). 2003 Nov;145(11):1021-2.

PMID:
14628210
25.

Resulting tensile forces in the human bone-patellar tendon-bone graft: direct force measurement in vitro.

Rupp S, Hopf T, Hess T, Seil R, Kohn DM.

Arthroscopy. 1999 Mar;15(2):179-84.

PMID:
10210076
26.
28.

Invasion of human cartilage by cultured multicellular spheroids of rheumatoid synovial cells--a novel in vitro model system for rheumatoid arthritis.

Ermis A, Müller B, Hopf T, Hopf C, Remberger K, Jüsten HP, Welter C, Hanselmann R.

J Rheumatol. 1998 Feb;25(2):208-13.

PMID:
9489808
29.

[Fractures after total knee joint endoprosthesis. Results of treatment with various stabilizing methods].

Hopf C, Hopf T, Rompe JD.

Unfallchirurgie. 1997 Jun;23(3):92-9. German.

PMID:
9334007
30.

Evidence for a selected humoral immune response encoded by VH4 family genes in the synovial membrane of a patient with rheumatoid arthritis (RA).

Voswinkel J, Trümper L, Carbon G, Hopf T, Pfreundschuh M, Gause A.

Clin Exp Immunol. 1996 Oct;106(1):5-12.

31.

[Cruciate ligament injuries with knee joint effusion--why can the Lachman sign not be elicited?].

Hopf T, Gleitz M, Rupp S, Müller B.

Z Orthop Ihre Grenzgeb. 1996 Sep-Oct;134(5):418-21. German.

PMID:
8967140
32.

[Experimental studies on the role of intramedullary alignment rods in the etiology of fat embolisms in knee endoprostheses].

Gleitz M, Hopf T, Hess T.

Z Orthop Ihre Grenzgeb. 1996 May-Jun;134(3):254-9. German.

PMID:
8766128
33.

Constitutive expression of c-fos and c-jun, overexpression of ets-2, and reduced expression of metastasis suppressor gene nm23-H1 in rheumatoid arthritis.

Dooley S, Herlitzka I, Hanselmann R, Ermis A, Henn W, Remberger K, Hopf T, Welter C.

Ann Rheum Dis. 1996 May;55(5):298-304.

34.

Chondropathia patellae and knee muscle control. An electromyographic study.

Hess T, Gleitz M, Egert S, Hopf T.

Arch Orthop Trauma Surg. 1996;115(2):85-9.

PMID:
9063858
36.

[Isokinetic training in the elderly].

Hopf T, Kimminus K.

Sportverletz Sportschaden. 1995 Dec;9(4):129-30. German. No abstract available.

PMID:
8584970
37.
38.

Proliferation enhancement by spontaneous multiplication of chromosome 7 in rheumatic synovial cells in vitro.

Ermis A, Henn W, Remberger K, Hopf C, Hopf T, Zang KD.

Hum Genet. 1995 Dec;96(6):651-4.

PMID:
8522321
39.

Shoulder problems in high level swimmers--impingement, anterior instability, muscular imbalance?

Rupp S, Berninger K, Hopf T.

Int J Sports Med. 1995 Nov;16(8):557-62.

PMID:
8776212
40.

The B lymphocyte in rheumatoid arthritis: analysis of rearranged V kappa genes from B cells infiltrating the synovial membrane.

Gause A, Gundlach K, Zdichavsky M, Jacobs G, Koch B, Hopf T, Pfreundschuh M.

Eur J Immunol. 1995 Oct;25(10):2775-82.

PMID:
7589071
41.

[Proprioceptive deficit following cruciate lesions--afferent disorder or compensatory mechanism?].

Hopf T, Gleitz M, Hess T, Mielke U, Müller B.

Z Orthop Ihre Grenzgeb. 1995 Jul-Aug;133(4):347-51. German.

PMID:
7571805
42.

Changes in muscular activity after knee arthrotomy and arthroscopy.

Hess T, Gleitz M, Hopf T, Olfs S, Mielke U.

Int Orthop. 1995;19(2):94-7.

PMID:
7649692
43.

[Biomechanical principles of after-care in replacement of the anterior cruciate ligament].

Rupp S, Hopf T, Gleitz M, Hess T.

Unfallchirurgie. 1994 Dec;20(6):303-10. German.

PMID:
7871608
44.

[Arthrofibrosis after replacement-plasty of the anterior cruciate ligament--incidence, causes, therapy].

Rupp S, Kaltenkirchen N, Hopf T.

Aktuelle Traumatol. 1994 Nov;24(7):274-8. German.

PMID:
7825475
45.
46.

Lateral tibial avulsion fractures and disruptions to the anterior cruciate ligament. A clinical study of their incidence and correlation.

Hess T, Rupp S, Hopf T, Gleitz M, Liebler J.

Clin Orthop Relat Res. 1994 Jun;(303):193-7.

PMID:
8194233
47.

Clonal chromosome aberrations in cell cultures of synovial tissue from patients with rheumatoid arthritis.

Ermis A, Hopf T, Hanselmann R, Remberger K, Welter C, Dooley S, Zang KD, Henn W.

Genes Chromosomes Cancer. 1993 Apr;6(4):232-4.

PMID:
7685626
48.

[Comparative biomechanical studies of conventional and self-tapping cortical bone screws].

Hess T, Hopf T, Fritsch E, Mittelmeier H.

Z Orthop Ihre Grenzgeb. 1991 May-Jun;129(3):278-82. German.

PMID:
1833915
49.
50.

[The surgical repositioning of spondylolisthesis using the internal fixator and a new simple repositioning instrument].

Hopf T, Schmitt E.

Z Orthop Ihre Grenzgeb. 1990 Sep-Oct;128(5):490-3. German.

PMID:
2147339

Supplemental Content

Support Center