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Complete Sequence of Succinamopine Ti-Plasmid pTiEU6 Reveals Its Evolutionary Relatedness with Nopaline-Type Ti-Plasmids.

Shao S, van Heusden GPH, Hooykaas PJJ.

Genome Biol Evol. 2019 Sep 1;11(9):2480-2491. doi: 10.1093/gbe/evz173.


The Agrobacterium VirD5 protein hyperactivates the mitotic Aurora kinase in host cells.

Zhang X, Hooykaas PJJ.

New Phytol. 2019 May;222(3):1551-1560. doi: 10.1111/nph.15700. Epub 2019 Mar 2.


Zinc Finger Artificial Transcription Factor-Mediated Chloroplast Genome Interrogation in Arabidopsis thaliana.

van Tol N, Flores Andaluz G, Leeggangers HACF, Roushan MR, Hooykaas PJJ, van der Zaal BJ.

Plant Cell Physiol. 2019 Feb 1;60(2):393-406. doi: 10.1093/pcp/pcy216.


Application of phiLOV2.1 as a fluorescent marker for visualization of Agrobacterium effector protein translocation.

Roushan MR, de Zeeuw MAM, Hooykaas PJJ, van Heusden GPH.

Plant J. 2018 Nov;96(3):685-699. doi: 10.1111/tpj.14060. Epub 2018 Sep 22.


Agrobacterium-Mediated Transformation of Yeast and Fungi.

Hooykaas PJJ, van Heusden GPH, Niu X, Reza Roushan M, Soltani J, Zhang X, van der Zaal BJ.

Curr Top Microbiol Immunol. 2018;418:349-374. doi: 10.1007/82_2018_90.


True gene-targeting events by CRISPR/Cas-induced DSB repair of the PPO locus with an ectopically integrated repair template.

de Pater S, Klemann BJPM, Hooykaas PJJ.

Sci Rep. 2018 Feb 20;8(1):3338. doi: 10.1038/s41598-018-21697-z.


Complete sequence of the tumor-inducing plasmid pTiChry5 from the hypervirulent Agrobacterium tumefaciens strain Chry5.

Shao S, Zhang X, van Heusden GPH, Hooykaas PJJ.

Plasmid. 2018 Mar - May;96-97:1-6. doi: 10.1016/j.plasmid.2018.02.001. Epub 2018 Feb 7.


Virulence protein VirD5 of Agrobacterium tumefaciens binds to kinetochores in host cells via an interaction with Spt4.

Zhang X, van Heusden GPH, Hooykaas PJJ.

Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):10238-10243. doi: 10.1073/pnas.1706166114. Epub 2017 Sep 5.


An Arabidopsis mutant with high operating efficiency of Photosystem II and low chlorophyll fluorescence.

van Tol N, Rolloos M, Augustijn D, Alia A, de Groot HJ, Hooykaas PJJ, van der Zaal BJ.

Sci Rep. 2017 Jun 12;7(1):3314. doi: 10.1038/s41598-017-03611-1.


Enhancement of Arabidopsis growth characteristics using genome interrogation with artificial transcription factors.

Tol NV, Rolloos M, Pinas JE, Henkel CV, Augustijn D, Hooykaas PJ, van der Zaal BJ.

PLoS One. 2017 Mar 30;12(3):e0174236. doi: 10.1371/journal.pone.0174236. eCollection 2017.


CRISPR/Cas9-Induced Double-Strand Break Repair in Arabidopsis Nonhomologous End-Joining Mutants.

Shen H, Strunks GD, Klemann BJ, Hooykaas PJ, de Pater S.

G3 (Bethesda). 2017 Jan 5;7(1):193-202. doi: 10.1534/g3.116.035204.


T-DNA integration in plants results from polymerase-θ-mediated DNA repair.

van Kregten M, de Pater S, Romeijn R, van Schendel R, Hooykaas PJ, Tijsterman M.

Nat Plants. 2016 Oct 31;2(11):16164. doi: 10.1038/nplants.2016.164.


Genome interrogation for novel salinity tolerant Arabidopsis mutants.

van Tol N, Pinas J, Schat H, Hooykaas PJ, van der Zaal BJ.

Plant Cell Environ. 2016 Dec;39(12):2650-2662. doi: 10.1111/pce.12805. Epub 2016 Oct 7.


The Agrobacterium tumefaciens virulence protein VirE3 is a transcriptional activator of the F-box gene VBF.

Niu X, Zhou M, Henkel CV, van Heusden GP, Hooykaas PJ.

Plant J. 2015 Dec;84(5):914-24. doi: 10.1111/tpj.13048. Epub 2015 Nov 21.


Enhanced targeted integration mediated by translocated I-SceI during the Agrobacterium mediated transformation of yeast.

Rolloos M, Hooykaas PJ, van der Zaal BJ.

Sci Rep. 2015 Feb 9;5:8345. doi: 10.1038/srep08345.


Interaction of the Agrobacterium tumefaciens virulence protein VirD2 with histones.

Wolterink-van Loo S, Escamilla Ayala AA, Hooykaas PJ, van Heusden GP.

Microbiology. 2015 Feb;161(Pt 2):401-10. doi: 10.1099/mic.0.083410-0. Epub 2014 Dec 10.


Genetic transformation of Knufia petricola A95 - a model organism for biofilm-material interactions.

Noack-Schönmann S, Bus T, Banasiak R, Knabe N, Broughton WJ, Den Dulk-Ras H, Hooykaas PJ, Gorbushina AA.

AMB Express. 2014 Nov 4;4:80. doi: 10.1186/s13568-014-0080-5. eCollection 2014.


Cre Reporter Assay for Translocation (CRAfT): a tool for the study of protein translocation into host cells.

den Dulk-Ras A, Vergunst AC, Hooykaas PJ.

Methods Mol Biol. 2014;1197:103-21. doi: 10.1007/978-1-4939-1261-2_6.


Genome Sequence of the Octopine-Type Agrobacterium tumefaciens Strain Ach5.

Henkel CV, den Dulk-Ras A, Zhang X, Hooykaas PJ.

Genome Announc. 2014 Mar 27;2(2). pii: e00225-14. doi: 10.1128/genomeA.00225-14.


Involvement of Rad52 in T-DNA circle formation during Agrobacterium tumefaciens-mediated transformation of Saccharomyces cerevisiae.

Rolloos M, Dohmen MH, Hooykaas PJ, van der Zaal BJ.

Mol Microbiol. 2014 Mar;91(6):1240-51. doi: 10.1111/mmi.12531. Epub 2014 Feb 18.


Visualization of VirE2 protein translocation by the Agrobacterium type IV secretion system into host cells.

Sakalis PA, van Heusden GP, Hooykaas PJ.

Microbiologyopen. 2014 Feb;3(1):104-17. doi: 10.1002/mbo3.152. Epub 2013 Dec 27.


Zinc finger artificial transcription factor-based nearest inactive analogue/nearest active analogue strategy used for the identification of plant genes controlling homologous recombination.

Jia Q, van Verk MC, Pinas JE, Lindhout BI, Hooykaas PJ, van der Zaal BJ.

Plant Biotechnol J. 2013 Dec;11(9):1069-79. doi: 10.1111/pbi.12101. Epub 2013 Aug 5.


Poly(ADP-ribose)polymerases are involved in microhomology mediated back-up non-homologous end joining in Arabidopsis thaliana.

Jia Q, den Dulk-Ras A, Shen H, Hooykaas PJ, de Pater S.

Plant Mol Biol. 2013 Jul;82(4-5):339-51. doi: 10.1007/s11103-013-0065-9. Epub 2013 Apr 28.


ZFN-mediated gene targeting of the Arabidopsis protoporphyrinogen oxidase gene through Agrobacterium-mediated floral dip transformation.

de Pater S, Pinas JE, Hooykaas PJ, van der Zaal BJ.

Plant Biotechnol J. 2013 May;11(4):510-5. doi: 10.1111/pbi.12040. Epub 2012 Dec 28.


The SLEEPER genes: a transposase-derived angiosperm-specific gene family.

Knip M, de Pater S, Hooykaas PJ.

BMC Plant Biol. 2012 Oct 16;12:192. doi: 10.1186/1471-2229-12-192.


Ehrlichia chaffeensis tandem repeat proteins and Ank200 are type 1 secretion system substrates related to the repeats-in-toxin exoprotein family.

Wakeel A, den Dulk-Ras A, Hooykaas PJ, McBride JW.

Front Cell Infect Microbiol. 2011 Dec 30;1:22. doi: 10.3389/fcimb.2011.00022. eCollection 2011.


Programmed Cell Death in the Leaves of the Arabidopsis Spontaneous Necrotic Spots (sns-D) Mutant Correlates with Increased Expression of the Eukaryotic Translation Initiation Factor eIF4B2.

Gaussand GM, Jia Q, van der Graaff E, Lamers GE, Fransz PF, Hooykaas PJ, de Pater S.

Front Plant Sci. 2011 Apr 8;2:9. doi: 10.3389/fpls.2011.00009. eCollection 2011.


Agrobacterium-mediated T-DNA transfer and integration by minimal VirD2 consisting of the relaxase domain and a type IV secretion system translocation signal.

van Kregten M, Lindhout BI, Hooykaas PJ, van der Zaal BJ.

Mol Plant Microbe Interact. 2009 Nov;22(11):1356-65. doi: 10.1094/MPMI-22-11-1356.


ZFN-induced mutagenesis and gene-targeting in Arabidopsis through Agrobacterium-mediated floral dip transformation.

de Pater S, Neuteboom LW, Pinas JE, Hooykaas PJ, van der Zaal BJ.

Plant Biotechnol J. 2009 Oct;7(8):821-35. doi: 10.1111/j.1467-7652.2009.00446.x.


Deletion of host histone acetyltransferases and deacetylases strongly affects Agrobacterium-mediated transformation of Saccharomyces cerevisiae.

Soltani J, van Heusden GP, Hooykaas PJ.

FEMS Microbiol Lett. 2009 Sep;298(2):228-33. doi: 10.1111/j.1574-6968.2009.01723.x. Epub 2009 Jul 13.


Agrobacterium tumefaciens VirC2 enhances T-DNA transfer and virulence through its C-terminal ribbon-helix-helix DNA-binding fold.

Lu J, den Dulk-Ras A, Hooykaas PJ, Glover JN.

Proc Natl Acad Sci U S A. 2009 Jun 16;106(24):9643-8. doi: 10.1073/pnas.0812199106. Epub 2009 May 29.


Agrobacterium-mediated transformation of the filamentous fungus Aspergillus awamori.

Michielse CB, Hooykaas PJ, van den Hondel CA, Ram AF.

Nat Protoc. 2008;3(10):1671-8. doi: 10.1038/nprot.2008.154.


Plant DNA repair and recombination on the French Mediterranean. Workshop on plant DNA repair & recombination.

Copenhaver GP, Hooykaas PJ.

EMBO Rep. 2007 Dec;8(12):1115-9. Epub 2007 Nov 16. No abstract available.


Stable recombinase-mediated cassette exchange in Arabidopsis using Agrobacterium tumefaciens.

Louwerse JD, van Lier MC, van der Steen DM, de Vlaam CM, Hooykaas PJ, Vergunst AC.

Plant Physiol. 2007 Dec;145(4):1282-93. Epub 2007 Oct 5.


Live cell imaging of repetitive DNA sequences via GFP-tagged polydactyl zinc finger proteins.

Lindhout BI, Fransz P, Tessadori F, Meckel T, Hooykaas PJ, van der Zaal BJ.

Nucleic Acids Res. 2007;35(16):e107. Epub 2007 Aug 17.


Anaplasma phagocytophilum AnkA secreted by type IV secretion system is tyrosine phosphorylated by Abl-1 to facilitate infection.

Lin M, den Dulk-Ras A, Hooykaas PJ, Rikihisa Y.

Cell Microbiol. 2007 Nov;9(11):2644-57. Epub 2007 Jun 24.


Towards a molecular genetic system for the pathogenic fungus Paracoccidioides brasiliensis.

Almeida AJ, Carmona JA, Cunha C, Carvalho A, Rappleye CA, Goldman WE, Hooykaas PJ, Leão C, Ludovico P, Rodrigues F.

Fungal Genet Biol. 2007 Dec;44(12):1387-98. Epub 2007 Apr 14.


The Agrobacterium VirE3 effector protein: a potential plant transcriptional activator.

García-Rodríguez FM, Schrammeijer B, Hooykaas PJ.

Nucleic Acids Res. 2006;34(22):6496-504. Epub 2006 Nov 27.


Yeast (Saccharomyces cerevisiae).

Hooykaas PJ, den Dulk-Ras A, Bundock P, Soltani J, van Attikum H, van Heusden GP.

Methods Mol Biol. 2006;344:465-73.


Agrobacterium rhizogenes GALLS protein contains domains for ATP binding, nuclear localization, and type IV secretion.

Hodges LD, Vergunst AC, Neal-McKinney J, den Dulk-Ras A, Moyer DM, Hooykaas PJ, Ream W.

J Bacteriol. 2006 Dec;188(23):8222-30. Epub 2006 Sep 29.


Effects of different zinc finger transcription factors on genomic targets.

Neuteboom LW, Lindhout BI, Saman IL, Hooykaas PJ, van der Zaal BJ.

Biochem Biophys Res Commun. 2006 Jan 6;339(1):263-70. Epub 2005 Nov 10.


Agrobacterium-mediated transformation as a tool for functional genomics in fungi.

Michielse CB, Hooykaas PJ, van den Hondel CA, Ram AF.

Curr Genet. 2005 Jul;48(1):1-17. Epub 2005 May 12. Review.


Positive charge is an important feature of the C-terminal transport signal of the VirB/D4-translocated proteins of Agrobacterium.

Vergunst AC, van Lier MC, den Dulk-Ras A, Stüve TA, Ouwehand A, Hooykaas PJ.

Proc Natl Acad Sci U S A. 2005 Jan 18;102(3):832-7. Epub 2005 Jan 11.


A PINOID-dependent binary switch in apical-basal PIN polar targeting directs auxin efflux.

Friml J, Yang X, Michniewicz M, Weijers D, Quint A, Tietz O, Benjamins R, Ouwerkerk PB, Ljung K, Sandberg G, Hooykaas PJ, Palme K, Offringa R.

Science. 2004 Oct 29;306(5697):862-5.


Symbiotic phenotypes and translocated effector proteins of the Mesorhizobium loti strain R7A VirB/D4 type IV secretion system.

Hubber A, Vergunst AC, Sullivan JT, Hooykaas PJ, Ronson CW.

Mol Microbiol. 2004 Oct;54(2):561-74.


Efficient gene targeting in Kluyveromyces lactis.

Kooistra R, Hooykaas PJ, Steensma HY.

Yeast. 2004 Jul 15;21(9):781-92.


Role of bacterial virulence proteins in Agrobacterium-mediated transformation of Aspergillus awamori.

Michielse CB, Ram AF, Hooykaas PJ, Hondel CA.

Fungal Genet Biol. 2004 May;41(5):571-8.


Diphtheria toxin-mediated cell ablation reveals interregional communication during Arabidopsis seed development.

Weijers D, Van Hamburg JP, Van Rijn E, Hooykaas PJ, Offringa R.

Plant Physiol. 2003 Dec;133(4):1882-92. Epub 2003 Nov 6.

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