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Items: 17


An unusual case of a young patient with Whipple's disease involving the central nervous system.

Flanagan ME, Andeen N, Lieberman J, Freeburg J, Williams JR, Hoogestraat DR, Bryan A, Sabath DE.

Clin Neuropathol. 2017 Jul/Aug;36(4):199-204. doi: 10.5414/NP301001. No abstract available.


Multifocal but non-disseminated phaeohyphomycosis in a healthy man via a unique mechanism: Ejection from motor vehicle accident into a vegetable field in Afghanistan resulting in multiple contaminated skin wounds.

Malakzai MO, Sahak JG, Campbell R, Abobakar M, Hoogestraat DR, SenGupta DJ, Bryan A, Gardner JM.

J Cutan Pathol. 2017 Jul;44(7):620-624. doi: 10.1111/cup.12942. Epub 2017 Apr 25.


Rhodococcus fascians infection after haematopoietic cell transplantation: not just a plant pathogen?

Austin MC, Hallstrand TS, Hoogestraat DR, Balmforth G, Stephens K, Butler-Wu S, Yeung CC.

JMM Case Rep. 2016 Mar 3;3(2):e005025. doi: 10.1099/jmmcr.0.005025. eCollection 2016 Mar.


Incidental identification of Strongyloides stercoralis infection by broad-range 28S rDNA gene sequencing in a patient with a hematolymphoid malignancy.

Konnick EQ, Chow SK, Reder NP, Sengupta DJ, Hoogestraat DR, Pottinger PS, Abbott AN, Monsaas PW, Kurosawa K, Stephens K, Salipante SJ, Yeung CC.

Diagn Microbiol Infect Dis. 2016 Dec;86(4):362-364. doi: 10.1016/j.diagmicrobio.2016.08.029. Epub 2016 Sep 4.


Clinical Next Generation Sequencing Outperforms Standard Microbiological Culture for Characterizing Polymicrobial Samples.

Cummings LA, Kurosawa K, Hoogestraat DR, SenGupta DJ, Candra F, Doyle M, Thielges S, Land TA, Rosenthal CA, Hoffman NG, Salipante SJ, Cookson BT.

Clin Chem. 2016 Nov;62(11):1465-1473. Epub 2016 Sep 13.


Erratum for Salipante et al., Performance Comparison of Illumina and Ion Torrent Next-Generation Sequencing Platforms for 16S rRNA-Based Bacterial Community Profiling.

Salipante SJ, Kawashima T, Rosenthal C, Hoogestraat DR, Cummings LA, Sengupta DJ, Harkins TT, Cookson BT, Hoffman NG.

Appl Environ Microbiol. 2016 Jun 30;82(14):4453. doi: 10.1128/AEM.01390-16. Print 2016 Jul 15. No abstract available.


Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology.

Salipante SJ, SenGupta DJ, Cummings LA, Land TA, Hoogestraat DR, Cookson BT.

J Clin Microbiol. 2015 Apr;53(4):1072-9. doi: 10.1128/JCM.03385-14. Epub 2015 Jan 28.


Characterization of a multidrug-resistant, novel Bacteroides genomospecies.

Salipante SJ, Kalapila A, Pottinger PS, Hoogestraat DR, Cummings L, Duchin JS, Sengupta DJ, Pergam SA, Cookson BT, Butler-Wu SM.

Emerg Infect Dis. 2015 Jan;21(1):95-8. doi: 10.3201/eid2101.140662.


Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling.

Salipante SJ, Kawashima T, Rosenthal C, Hoogestraat DR, Cummings LA, Sengupta DJ, Harkins TT, Cookson BT, Hoffman NG.

Appl Environ Microbiol. 2014 Dec;80(24):7583-91. doi: 10.1128/AEM.02206-14. Epub 2014 Sep 26. Erratum in: Appl Environ Microbiol. 2016 Jul 15;82(14):4453.


Whole genome sequencing indicates Corynebacterium jeikeium comprises 4 separate genomospecies and identifies a dominant genomospecies among clinical isolates.

Salipante SJ, Sengupta DJ, Cummings LA, Robinson A, Kurosawa K, Hoogestraat DR, Cookson BT.

Int J Med Microbiol. 2014 Nov;304(8):1001-10. doi: 10.1016/j.ijmm.2014.07.003. Epub 2014 Jul 25.


Whole-genome sequencing for high-resolution investigation of methicillin-resistant Staphylococcus aureus epidemiology and genome plasticity.

SenGupta DJ, Cummings LA, Hoogestraat DR, Butler-Wu SM, Shendure J, Cookson BT, Salipante SJ.

J Clin Microbiol. 2014 Aug;52(8):2787-96. doi: 10.1128/JCM.00759-14. Epub 2014 May 21.


Coinfection of Fusobacterium nucleatum and Actinomyces israelii in mastoiditis diagnosed by next-generation DNA sequencing.

Salipante SJ, Hoogestraat DR, Abbott AN, SenGupta DJ, Cummings LA, Butler-Wu SM, Stephens K, Cookson BT, Hoffman NG.

J Clin Microbiol. 2014 May;52(5):1789-92. doi: 10.1128/JCM.03133-13. Epub 2014 Feb 26.


Molecular diagnosis of Actinomadura madurae infection by 16S rRNA deep sequencing.

Salipante SJ, Sengupta DJ, Hoogestraat DR, Cummings LA, Bryant BH, Natividad C, Thielges S, Monsaas PW, Chau M, Barbee LA, Rosenthal C, Cookson BT, Hoffman NG.

J Clin Microbiol. 2013 Dec;51(12):4262-5. doi: 10.1128/JCM.02227-13. Epub 2013 Oct 9.


Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections.

Salipante SJ, Sengupta DJ, Rosenthal C, Costa G, Spangler J, Sims EH, Jacobs MA, Miller SI, Hoogestraat DR, Cookson BT, McCoy C, Matsen FA, Shendure J, Lee CC, Harkins TT, Hoffman NG.

PLoS One. 2013 May 29;8(5):e65226. doi: 10.1371/journal.pone.0065226. Print 2013.


Molecular diagnosis of subcutaneous Pythium insidiosum infection by use of PCR screening and DNA sequencing.

Salipante SJ, Hoogestraat DR, SenGupta DJ, Murphey D, Panayides K, Hamilton E, Castañeda-Sánchez I, Kennedy J, Monsaas PW, Mendoza L, Stephens K, Dunn JJ, Cookson BT.

J Clin Microbiol. 2012 Apr;50(4):1480-3. doi: 10.1128/JCM.06126-11. Epub 2012 Jan 11.


Molecular diagnosis of cystoisosporiasis using extended-range PCR screening.

Murphy SC, Hoogestraat DR, Sengupta DJ, Prentice J, Chakrapani A, Cookson BT.

J Mol Diagn. 2011 May;13(3):359-62. doi: 10.1016/j.jmoldx.2011.01.007. Epub 2011 Mar 31.


Diagnosis of neurocysticercosis by detection of Taenia solium DNA using a global DNA screening platform.

Harrington AT, Creutzfeldt CJ, Sengupta DJ, Hoogestraat DR, Zunt JR, Cookson BT.

Clin Infect Dis. 2009 Jan 1;48(1):86-90. doi: 10.1086/594128.

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