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Items: 1 to 50 of 155

1.

Clinical potential of mass spectrometry-based proteogenomics.

Zhang B, Whiteaker JR, Hoofnagle AN, Baird GS, Rodland KD, Paulovich AG.

Nat Rev Clin Oncol. 2018 Nov 28. doi: 10.1038/s41571-018-0135-7. [Epub ahead of print] Review.

PMID:
30487530
2.

Cannabis Legalization Does Not Influence Patient Compliance with Opioid Therapy.

Lo SY, Winston-McPherson GN, Starosta AJ, Sullivan MD, Baird GS, Hoofnagle AN, Greene DN.

Am J Med. 2018 Nov 10. pii: S0002-9343(18)31047-7. doi: 10.1016/j.amjmed.2018.11.002. [Epub ahead of print]

PMID:
30419224
3.

Calibration Using a Single-Point External Reference Material Harmonizes Quantitative Mass Spectrometry Proteomics Data between Platforms and Laboratories.

Pino LK, Searle BC, Huang EL, Noble WS, Hoofnagle AN, MacCoss MJ.

Anal Chem. 2018 Nov 6;90(21):13112-13117. doi: 10.1021/acs.analchem.8b04581. Epub 2018 Oct 23.

PMID:
30350613
4.

Quantification of Methotrexate in Human Serum and Plasma by Liquid Chromatography Tandem Mass Spectrometry.

Winston-McPherson GN, Schmeling M, Hoofnagle AN.

Methods Mol Biol. 2019;1872:101-110. doi: 10.1007/978-1-4939-8823-5_10.

PMID:
30350283
5.

Vitamin D and omega-3 trial to prevent and treat diabetic kidney disease: Rationale, design, and baseline characteristics.

de Boer IH, Zelnick LR, Lin J, Schaumberg D, Wang L, Ruzinski J, Friedenberg G, Duszlak J, Bubes VY, Hoofnagle AN, Thadhani R, Glynn RJ, Buring JE, Sesso HD, Manson JE.

Contemp Clin Trials. 2018 Nov;74:11-17. doi: 10.1016/j.cct.2018.09.014. Epub 2018 Sep 30.

PMID:
30282055
6.

Vitamin D Metabolites in Aging HIV-Infected Men: Does Inflammation Play a Role?

Zhang L, Brown TT, Margolick JB, Witt MD, Palella FJ Jr, Kingsley LA, Hoofnagle AN, Tin A, Jacobson LP, Abraham AG.

AIDS Res Hum Retroviruses. 2018 Oct 30. doi: 10.1089/AID.2018.0101. [Epub ahead of print]

PMID:
30251872
7.

Safety of calcium and vitamin D supplements, a randomized controlled trial.

Aloia JF, Katumuluwa S, Stolberg A, Usera G, Mikhail M, Hoofnagle AN, Islam S.

Clin Endocrinol (Oxf). 2018 Dec;89(6):742-749. doi: 10.1111/cen.13848. Epub 2018 Oct 1.

PMID:
30180273
8.

Comparability of Lipoprotein Particle Number Concentrations Across ES-DMA, NMR, LC-MS/MS, Immunonephelometry, and VAP: In Search of a Candidate Reference Measurement Procedure for apoB and non-HDL-P Standardization.

Delatour V, Clouet-Foraison N, Gaie-Levrel F, Marcovina SM, Hoofnagle AN, Kuklenyik Z, Caulfield MP, Otvos JD, Krauss RM, Kulkarni KR, Contois JH, Remaley AT, Vesper HW, Cobbaert CM, Gillery P.

Clin Chem. 2018 Oct;64(10):1485-1495. doi: 10.1373/clinchem.2018.288746. Epub 2018 Aug 7.

PMID:
30087138
9.

Vitamin D Deficiency is Associated with Poor Ovarian Stimulation Outcome in PCOS but not Unexplained Infertility.

Butts SF, Seifer DB, Koelper N, Senapati S, Sammel MD, Hoofnagle AN, Kelly A, Krawetz SA, Santoro N, Zhang H, Diamond MP, Legro RS; Eunice Kennedy Shriver National Institute of Child Health and Human Development Reproductive Medicine Network.

J Clin Endocrinol Metab. 2018 Aug 3. doi: 10.1210/jc.2018-00750. [Epub ahead of print]

PMID:
30085176
10.

Alteration of HDL Protein Composition with Hemodialysis Initiation.

Wang K, Zelnick LR, Hoofnagle AN, Vaisar T, Henderson CM, Imrey PB, Robinson-Cohen C, de Boer IH, Shiu YT, Himmelfarb J, Beck GJ, Kestenbaum B; HFM Study.

Clin J Am Soc Nephrol. 2018 Aug 7;13(8):1225-1233. doi: 10.2215/CJN.11321017. Epub 2018 Jul 25.

PMID:
30045914
11.

Serum Calcitriol Concentrations and Kidney Function Decline, Heart Failure, and Mortality in Elderly Community-Living Adults: The Health, Aging, and Body Composition Study.

Selamet U, Katz R, Ginsberg C, Rifkin DE, Fried LF, Kritchevsky SB, Hoofnagle AN, Bibbins-Domingo K, Drew D, Harris T, Newman A, Gutiérrez OM, Sarnak MJ, Shlipak MG, Ix JH.

Am J Kidney Dis. 2018 Sep;72(3):419-428. doi: 10.1053/j.ajkd.2018.03.026. Epub 2018 Jun 6.

PMID:
29885925
12.

Polybrominated diphenyl ether (PBDE) exposures and thyroid hormones in children at age 3 years.

Vuong AM, Braun JM, Webster GM, Thomas Zoeller R, Hoofnagle AN, Sjödin A, Yolton K, Lanphear BP, Chen A.

Environ Int. 2018 Aug;117:339-347. doi: 10.1016/j.envint.2018.05.019. Epub 2018 May 19.

PMID:
29787984
13.

Maternal urinary phthalate metabolites during pregnancy and thyroid hormone concentrations in maternal and cord sera: The HOME Study.

Romano ME, Eliot MN, Zoeller RT, Hoofnagle AN, Calafat AM, Karagas MR, Yolton K, Chen A, Lanphear BP, Braun JM.

Int J Hyg Environ Health. 2018 May;221(4):623-631. doi: 10.1016/j.ijheh.2018.03.010. Epub 2018 Mar 23.

PMID:
29606598
14.

Type 2 diabetes is associated with loss of HDL endothelium protective functions.

Vaisar T, Couzens E, Hwang A, Russell M, Barlow CE, DeFina LF, Hoofnagle AN, Kim F.

PLoS One. 2018 Mar 15;13(3):e0192616. doi: 10.1371/journal.pone.0192616. eCollection 2018.

15.

Nonlinear Regression Improves Accuracy of Characterization of Multiplexed Mass Spectrometric Assays.

Galitzine C, Egertson JD, Abbatiello S, Henderson CM, Pino LK, MacCoss M, Hoofnagle AN, Vitek O.

Mol Cell Proteomics. 2018 May;17(5):913-924. doi: 10.1074/mcp.RA117.000322. Epub 2018 Feb 9.

PMID:
29438992
16.

Skyline Performs as Well as Vendor Software in the Quantitative Analysis of Serum 25-Hydroxy Vitamin D and Vitamin D Binding Globulin.

Henderson CM, Shulman NJ, MacLean B, MacCoss MJ, Hoofnagle AN.

Clin Chem. 2018 Feb;64(2):408-410. doi: 10.1373/clinchem.2017.282293. Epub 2017 Dec 4. No abstract available.

17.

Biomarkers of tubulointerstitial damage and function in type 1 diabetes.

de Boer IH, Gao X, Bebu I, Hoofnagle AN, Lachin JM, Paterson A, Perkins BA, Saenger AK, Steffes MW, Zinman B, Molitch ME.

BMJ Open Diabetes Res Care. 2017 Nov 14;5(1):e000461. doi: 10.1136/bmjdrc-2017-000461. eCollection 2017.

18.

The 24,25 to 25-hydroxyvitamin D ratio and fracture risk in older adults: The cardiovascular health study.

Ginsberg C, Katz R, de Boer IH, Kestenbaum BR, Chonchol M, Shlipak MG, Sarnak MJ, Hoofnagle AN, Rifkin DE, Garimella PS, Ix JH.

Bone. 2018 Feb;107:124-130. doi: 10.1016/j.bone.2017.11.011. Epub 2017 Nov 16.

PMID:
29155243
19.

The Authors Reply.

Vaisar T, Rubinow KB, Hoofnagle AN.

Kidney Int. 2017 Dec;92(6):1556. doi: 10.1016/j.kint.2017.09.001. No abstract available.

20.

Harmonization of blood-based indicators of iron status: making the hard work matter.

Hoofnagle AN.

Am J Clin Nutr. 2017 Dec;106(Suppl 6):1615S-1619S. doi: 10.3945/ajcn.117.155895. Epub 2017 Oct 25. Review.

21.

Measurement of Vitamin D for Epidemiologic and Clinical Research: Shining Light on a Complex Decision.

Jukic AMZ, Hoofnagle AN, Lutsey PL.

Am J Epidemiol. 2018 Apr 1;187(4):879-890. doi: 10.1093/aje/kwx297.

PMID:
29020155
22.

Baseline Assessment of 25-Hydroxyvitamin D Assay Performance: A Vitamin D Standardization Program (VDSP) Interlaboratory Comparison Study.

Wise SA, Phinney KW, Tai SS, Camara JE, Myers GL, Durazo-Arvizu R, Tian L, Hoofnagle AN, Bachmann LM, Young IS, Pettit J, Caldwell G, Liu A, Brooks SPJ, Sarafin K, Thamm M, Mensink GBM, Busch M, Rabenberg M, Cashman KD, Kiely M, Kinsella M, Galvin K, Zhang JY, Oh K, Lee SW, Jung CL, Cox L, Goldberg G, Guberg K, Prentice A, Carter GD, Jones J, Brannon PM, Lucas RM, Crump PM, Cavalier E, Merkel J, Betz JM, Sempos CT.

J AOAC Int. 2017 Sep 1;100(5):1244-1252. doi: 10.5740/jaoacint.17-0258. Epub 2017 Aug 19.

PMID:
28822355
23.

Baseline Assessment of 25-Hydroxyvitamin D Reference Material and Proficiency Testing/External Quality Assurance Material Commutability: A Vitamin D Standardization Program Study.

Phinney KW, Sempos CT, Tai SS, Camara JE, Wise SA, Eckfeldt JH, Hoofnagle AN, Carter GD, Jones J, Myers GL, Durazo-Arvizu R, Miller WG, Bachmann LM, Young IS, Pettit J, Caldwell G, Liu A, Brooks SPJ, Sarafin K, Thamm M, Mensink GBM, Busch M, Rabenberg M, Cashman KD, Kiely M, Galvin K, Zhang JY, Kinsella M, Oh K, Lee SW, Jung CL, Cox L, Goldberg G, Guberg K, Meadows S, Prentice A, Tian L, Brannon PM, Lucas RM, Crump PM, Cavalier E, Merkel J, Betz JM.

J AOAC Int. 2017 Sep 1;100(5):1288-1293. doi: 10.5740/jaoacint.17-0291. Epub 2017 Aug 10.

PMID:
28797319
24.

Effects of Vitamin D2 Supplementation on Vitamin D3 Metabolism in Health and CKD.

Batacchi Z, Robinson-Cohen C, Hoofnagle AN, Isakova T, Kestenbaum B, Martin KJ, Wolf MS, de Boer IH.

Clin J Am Soc Nephrol. 2017 Sep 7;12(9):1498-1506. doi: 10.2215/CJN.00530117. Epub 2017 Aug 2.

25.

General Steps to Standardize the Laboratory Measurement of Serum Total 25-Hydroxyvitamin D.

Sempos CT, Betz JM, Camara JE, Carter GD, Cavalier E, Clarke MW, Dowling KG, Durazo-Arvizu RA, Hoofnagle AN, Liu A, Phinney KW, Sarafin K, Wise SA, Coates PM.

J AOAC Int. 2017 Sep 1;100(5):1230-1233. doi: 10.5740/jaoacint.17-0259. Epub 2017 Aug 1.

PMID:
28766476
26.

Evaluation of Posaconazole Serum Concentrations from Delayed-Release Tablets in Patients at High Risk for Fungal Infections.

Chin A, Pergam SA, Fredricks DN, Hoofnagle AN, Baker KK, Jain R.

Antimicrob Agents Chemother. 2017 Sep 22;61(10). pii: e00569-17. doi: 10.1128/AAC.00569-17. Print 2017 Oct.

27.

Kidney function is associated with an altered protein composition of high-density lipoprotein.

Rubinow KB, Henderson CM, Robinson-Cohen C, Himmelfarb J, de Boer IH, Vaisar T, Kestenbaum B, Hoofnagle AN.

Kidney Int. 2017 Dec;92(6):1526-1535. doi: 10.1016/j.kint.2017.05.020. Epub 2017 Jul 26.

28.

Interlaboratory Comparison for the Determination of 24,25-Dihydroxyvitamin D₃ in Human Serum Using Liquid Chromatography with Tandem Mass Spectrometry.

Wise SA, Tai SS, Nelson MA, Burdette CQ, Camara JE, Hoofnagle AN, Laha TJ, Carter GD, Jones J, Williams EL, Barclay ZJ, Jones G, Kaufmann M, Binkley N, Kapoor A, Ziegler T, Cashman KD, Dowling KG, Sempos CT.

J AOAC Int. 2017 Sep 1;100(5):1308-1317. doi: 10.5740/jaoacint.17-0183. Epub 2017 Jul 24.

PMID:
28741469
29.

Variability in measures of mineral metabolism in children on hemodialysis: impact on clinical decision-making.

Kakajiwala A, Jemielita TO, Copelovitch L, Leonard MB, Furth SL, York A, Benton M, Hoofnagle AN, Windt K, Merrigan K, Lederman A, Denburg MR.

Pediatr Nephrol. 2017 Dec;32(12):2311-2318. doi: 10.1007/s00467-017-3730-4. Epub 2017 Jun 30.

PMID:
28667458
30.

Maternal perchlorate exposure in pregnancy and altered birth outcomes.

Rubin R, Pearl M, Kharrazi M, Blount BC, Miller MD, Pearce EN, Valentin-Blasini L, DeLorenze G, Liaw J, Hoofnagle AN, Steinmaus C.

Environ Res. 2017 Oct;158:72-81. doi: 10.1016/j.envres.2017.05.030. Epub 2017 Jun 9.

31.

Associations of Vitamin D-Binding Globulin and Bioavailable Vitamin D Concentrations With Coronary Heart Disease Events: The Multi-Ethnic Study of Atherosclerosis (MESA).

Robinson-Cohen C, Zelnick LR, Hoofnagle AN, Lutsey PL, Burke G, Michos ED, Shea SJC, Tracy R, Siscovick DS, Psaty B, Kestenbaum B, de Boer IH.

J Clin Endocrinol Metab. 2017 Aug 1;102(8):3075-3084. doi: 10.1210/jc.2017-00296.

32.

Association of Vitamin D Metabolites With Arterial Function in the Hemodialysis Fistula Maturation Study.

van Ballegooijen AJ, Zelnick L, Hoofnagle AN, Hamburg NM, Robinson-Cohen C, Roy-Chaudhury P, Cheung AK, Shiu YT, de Boer IH, Himmelfarb J, Beck G, Imrey PB, Kusek JW, Kestenbaum B; Hemodialysis Fistula Maturation (HFM) Study Group.

Am J Kidney Dis. 2017 Jun;69(6):805-814. doi: 10.1053/j.ajkd.2017.01.049. Epub 2017 Mar 27.

33.

Establishing evidence-based thresholds and laboratory practices to reduce inappropriate treatment of pseudohyperkalemia.

Ranjitkar P, Greene DN, Baird GS, Hoofnagle AN, Mathias PC.

Clin Biochem. 2017 Aug;50(12):663-669. doi: 10.1016/j.clinbiochem.2017.03.007. Epub 2017 Mar 10.

34.

The vitamin D metabolite ratio (VMR) as a predictor of functional biomarkers of bone health.

Aloia J, Fazzari M, Shieh A, Dhaliwal R, Mikhail M, Hoofnagle AN, Ragolia L.

Clin Endocrinol (Oxf). 2017 May;86(5):674-679. doi: 10.1111/cen.13319. Epub 2017 Mar 31.

PMID:
28251655
35.

A Novel Discovery Platform: Aptamers for the Quantification of Human Proteins.

Baird GS, Hoofnagle AN.

Clin Chem. 2017 Jun;63(6):1061-1062. doi: 10.1373/clinchem.2016.265652. Epub 2017 Mar 1. No abstract available.

36.

Automated Trapping Column Exchanger for High-Throughput Nanoflow Liquid Chromatography.

Spencer SE, Corso TN, Bollinger JG, Henderson CM, Hoofnagle AN, MacCoss MJ.

Anal Chem. 2017 Feb 21;89(4):2383-2389. doi: 10.1021/acs.analchem.6b04227. Epub 2017 Jan 30.

37.

Diurnal and Long-term Variation in Plasma Concentrations and Renal Clearances of Circulating Markers of Kidney Proximal Tubular Secretion.

Rivara MB, Zelnick LR, Hoofnagle AN, Newitt R, Tracy RP, Kratz M, Weigle DS, Kestenbaum BR.

Clin Chem. 2017 Apr;63(4):915-923. doi: 10.1373/clinchem.2016.260117. Epub 2017 Feb 10.

38.

New Guidelines for Publication of Manuscripts Describing Development and Application of Targeted Mass Spectrometry Measurements of Peptides and Proteins.

Abbatiello S, Ackermann BL, Borchers C, Bradshaw RA, Carr SA, Chalkley R, Choi M, Deutsch E, Domon B, Hoofnagle AN, Keshishian H, Kuhn E, Liebler DC, MacCoss M, MacLean B, Mani DR, Neubert H, Smith D, Vitek O, Zimmerman L.

Mol Cell Proteomics. 2017 Mar;16(3):327-328. doi: 10.1074/mcp.E117.067801. Epub 2017 Feb 9. No abstract available.

39.

The Relation of Serum Potassium Concentration with Cardiovascular Events and Mortality in Community-Living Individuals.

Hughes-Austin JM, Rifkin DE, Beben T, Katz R, Sarnak MJ, Deo R, Hoofnagle AN, Homma S, Siscovick DS, Sotoodehnia N, Psaty BM, de Boer IH, Kestenbaum B, Shlipak MG, Ix JH.

Clin J Am Soc Nephrol. 2017 Feb 7;12(2):245-252. doi: 10.2215/CJN.06290616. Epub 2017 Jan 31.

40.

Quantification by nano liquid chromatography parallel reaction monitoring mass spectrometry of human apolipoprotein A-I, apolipoprotein B, and hemoglobin A1c in dried blood spots.

Henderson CM, Bollinger JG, Becker JO, Wallace JM, Laha TJ, MacCoss MJ, Hoofnagle AN.

Proteomics Clin Appl. 2017 Jul;11(7-8). doi: 10.1002/prca.201600103. Epub 2017 Mar 6.

41.

Serum Bicarbonate Is Associated with Heart Failure in the Multi-Ethnic Study of Atherosclerosis.

Kendrick JB, Zelnick L, Chonchol MB, Siscovick D, Hoofnagle AN, Ix JH, Sarnak M, Shlipak MG, Kestenbaum B, de Boer IH.

Am J Nephrol. 2017;45(2):118-126. doi: 10.1159/000454783. Epub 2016 Dec 10.

42.

Vitamin D Deficiency and Metabolism in HIV-Infected and HIV-Uninfected Men in the Multicenter AIDS Cohort Study.

Zhang L, Tin A, Brown TT, Margolick JB, Witt MD, Palella FJ Jr, Kingsley LA, Hoofnagle AN, Jacobson LP, Abraham AG.

AIDS Res Hum Retroviruses. 2017 Mar;33(3):261-270. doi: 10.1089/AID.2016.0144. Epub 2016 Nov 17.

43.

Short-term Variability of Vitamin D-Related Biomarkers.

Lutsey PL, Parrinello CM, Misialek JR, Hoofnagle AN, Henderson CM, Laha TJ, Michos ED, Eckfeldt JH, Selvin E.

Clin Chem. 2016 Dec;62(12):1647-1653. Epub 2016 Sep 30.

44.

Optimized Protocol for Quantitative Multiple Reaction Monitoring-Based Proteomic Analysis of Formalin-Fixed, Paraffin-Embedded Tissues.

Kennedy JJ, Whiteaker JR, Schoenherr RM, Yan P, Allison K, Shipley M, Lerch M, Hoofnagle AN, Baird GS, Paulovich AG.

J Proteome Res. 2016 Aug 5;15(8):2717-28. doi: 10.1021/acs.jproteome.6b00245. Epub 2016 Jul 27.

45.

Potassium Measures and Their Associations with Glucose and Diabetes Risk: The Multi-Ethnic Study of Atherosclerosis (MESA).

Chatterjee R, Zelnick L, Mukamal KJ, Nettleton JA, Kestenbaum BR, Siscovick DS, Ix JH, Tracy R, Hoofnagle AN, Svetkey LP, Edelman D, de Boer IH.

PLoS One. 2016 Jun 9;11(6):e0157252. doi: 10.1371/journal.pone.0157252. eCollection 2016.

46.

Comparison of Two ELISA Methods and Mass Spectrometry for Measurement of Vitamin D-Binding Protein: Implications for the Assessment of Bioavailable Vitamin D Concentrations Across Genotypes.

Denburg MR, Hoofnagle AN, Sayed S, Gupta J, de Boer IH, Appel LJ, Durazo-Arvizu R, Whitehead K, Feldman HI, Leonard MB; Chronic Renal Insufficiency Cohort study investigators.

J Bone Miner Res. 2016 Jun;31(6):1128-36. doi: 10.1002/jbmr.2829.

47.

Recalibration of 24,25-Dihydroxyvitamin D3 Results Based on NIST Standard Reference Material 972a.

Hoofnagle AN, Laha TJ, de Boer IH.

Am J Kidney Dis. 2016 May;67(5):812-3. doi: 10.1053/j.ajkd.2016.02.036. No abstract available.

48.

Fibroblast Growth Factor-23 and Frailty in Elderly Community-Dwelling Individuals: The Cardiovascular Health Study.

Beben T, Ix JH, Shlipak MG, Sarnak MJ, Fried LF, Hoofnagle AN, Chonchol M, Kestenbaum BR, de Boer IH, Rifkin DE.

J Am Geriatr Soc. 2016 Feb;64(2):270-6. doi: 10.1111/jgs.13951.

49.

Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays.

Whiteaker JR, Halusa GN, Hoofnagle AN, Sharma V, MacLean B, Yan P, Wrobel JA, Kennedy J, Mani DR, Zimmerman LJ, Meyer MR, Mesri M, Boja E, Carr SA, Chan DW, Chen X, Chen J, Davies SR, Ellis MJ, Fenyö D, Hiltke T, Ketchum KA, Kinsinger C, Kuhn E, Liebler DC, Liu T, Loss M, MacCoss MJ, Qian WJ, Rivers R, Rodland KD, Ruggles KV, Scott MG, Smith RD, Thomas S, Townsend RR, Whiteley G, Wu C, Zhang H, Zhang Z, Rodriguez H, Paulovich AG.

Methods Mol Biol. 2016;1410:223-36. doi: 10.1007/978-1-4939-3524-6_13.

50.

Isolating and Quantifying Plasma HDL Proteins by Sequential Density Gradient Ultracentrifugation and Targeted Proteomics.

Henderson CM, Vaisar T, Hoofnagle AN.

Methods Mol Biol. 2016;1410:105-20. doi: 10.1007/978-1-4939-3524-6_7.

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