Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 68

1.

Repressive Epigenetic Signatures Safeguard the Liver.

Thakur A, Hoodless PA.

Dev Cell. 2019 Jul 1;50(1):3-4. doi: 10.1016/j.devcel.2019.06.006.

PMID:
31265811
2.

Endothelial Sash1 Is Required for Lung Maturation through Nitric Oxide Signaling.

Coulombe P, Paliouras GN, Clayton A, Hussainkhel A, Fuller M, Jovanovic V, Dauphinee S, Umlandt P, Xiang P, Kyle AH, Minchinton AI, Humphries RK, Hoodless PA, Parker JDK, Wright JL, Karsan A.

Cell Rep. 2019 May 7;27(6):1769-1780.e4. doi: 10.1016/j.celrep.2019.04.039.

3.

The emergent landscape of the mouse gut endoderm at single-cell resolution.

Nowotschin S, Setty M, Kuo YY, Liu V, Garg V, Sharma R, Simon CS, Saiz N, Gardner R, Boutet SC, Church DM, Hoodless PA, Hadjantonakis AK, Pe'er D.

Nature. 2019 May;569(7756):361-367. doi: 10.1038/s41586-019-1127-1. Epub 2019 Apr 8.

4.

Hepatocyte Nuclear Factor 4-Alpha Is Essential for the Active Epigenetic State at Enhancers in Mouse Liver.

Thakur A, Wong JCH, Wang EY, Lotto J, Kim D, Cheng JC, Mingay M, Cullum R, Moudgil V, Ahmed N, Tsai SH, Wei W, Walsh CP, Stephan T, Bilenky M, Fuglerud BM, Karimi MM, Gonzalez FJ, Hirst M, Hoodless PA.

Hepatology. 2019 Oct;70(4):1360-1376. doi: 10.1002/hep.30631. Epub 2019 May 15.

PMID:
30933372
5.

YAP transcriptionally regulates ErbB2 to promote liver cell proliferation.

Wang EY, Cheng JC, Thakur A, Yi Y, Tsai SH, Hoodless PA.

Biochim Biophys Acta Gene Regul Mech. 2018 Jul 17. pii: S1874-9399(18)30039-7. doi: 10.1016/j.bbagrm.2018.07.004. [Epub ahead of print]

PMID:
30025876
6.

S1P Stimulates Proliferation by Upregulating CTGF Expression through S1PR2-Mediated YAP Activation.

Cheng JC, Wang EY, Yi Y, Thakur A, Tsai SH, Hoodless PA.

Mol Cancer Res. 2018 Oct;16(10):1543-1555. doi: 10.1158/1541-7786.MCR-17-0681. Epub 2018 Jun 14.

7.

Expression patterns of Yes-associated protein 1 in the developing mouse liver.

Wei W, Lotto J, Hoodless PA.

Gene Expr Patterns. 2018 Sep;29:10-17. doi: 10.1016/j.gep.2018.04.003. Epub 2018 Apr 5.

PMID:
29627454
8.

A knock-in mouse strain facilitates dynamic tracking and enrichment of MEIS1.

Xiang P, Wei W, Hofs N, Clemans-Gibbon J, Maetzig T, Lai CK, Dhillon I, May C, Ruschmann J, Schneider E, Rosten P, Hu K, Kuchenbauer F, Hoodless PA, Humphries RK.

Blood Adv. 2017 Nov 7;1(24):2225-2235. doi: 10.1182/bloodadvances.2017010355. eCollection 2017 Nov 14.

9.

APELA promotes tumour growth and cell migration in ovarian cancer in a p53-dependent manner.

Yi Y, Tsai SH, Cheng JC, Wang EY, Anglesio MS, Cochrane DR, Fuller M, Gibb EA, Wei W, Huntsman DG, Karsan A, Hoodless PA.

Gynecol Oncol. 2017 Dec;147(3):663-671. doi: 10.1016/j.ygyno.2017.10.016. Epub 2017 Oct 24.

PMID:
29079036
10.

Loss of Apela Peptide in Mice Causes Low Penetrance Embryonic Lethality and Defects in Early Mesodermal Derivatives.

Freyer L, Hsu CW, Nowotschin S, Pauli A, Ishida J, Kuba K, Fukamizu A, Schier AF, Hoodless PA, Dickinson ME, Hadjantonakis AK.

Cell Rep. 2017 Aug 29;20(9):2116-2130. doi: 10.1016/j.celrep.2017.08.014.

11.

The role of the innate immune response regulatory gene ABCF1 in mammalian embryogenesis and development.

Wilcox SM, Arora H, Munro L, Xin J, Fenninger F, Johnson LA, Pfeifer CG, Choi KB, Hou J, Hoodless PA, Jefferies WA.

PLoS One. 2017 May 19;12(5):e0175918. doi: 10.1371/journal.pone.0175918. eCollection 2017.

12.

SOX9 modulates the expression of key transcription factors required for heart valve development.

Garside VC, Cullum R, Alder O, Lu DY, Vander Werff R, Bilenky M, Zhao Y, Jones SJ, Marra MA, Underhill TM, Hoodless PA.

Development. 2015 Dec 15;142(24):4340-50. doi: 10.1242/dev.125252. Epub 2015 Nov 2.

13.

MEF2B mutations in non-Hodgkin lymphoma dysregulate cell migration by decreasing MEF2B target gene activation.

Pon JR, Wong J, Saberi S, Alder O, Moksa M, Grace Cheng SW, Morin GB, Hoodless PA, Hirst M, Marra MA.

Nat Commun. 2015 Aug 6;6:7953. doi: 10.1038/ncomms8953.

14.

Huntingtin interacting proteins 14 and 14-like are required for chorioallantoic fusion during early placental development.

Sanders SS, Hou J, Sutton LM, Garside VC, Mui KK, Singaraja RR, Hayden MR, Hoodless PA.

Dev Biol. 2015 Jan 15;397(2):257-66. doi: 10.1016/j.ydbio.2014.11.018. Epub 2014 Dec 3.

15.

Hippo signaling influences HNF4A and FOXA2 enhancer switching during hepatocyte differentiation.

Alder O, Cullum R, Lee S, Kan AC, Wei W, Yi Y, Garside VC, Bilenky M, Griffith M, Morrissy AS, Robertson GA, Thiessen N, Zhao Y, Chen Q, Pan D, Jones SJM, Marra MA, Hoodless PA.

Cell Rep. 2014 Oct 9;9(1):261-271. doi: 10.1016/j.celrep.2014.08.046. Epub 2014 Sep 25.

16.

A regulatory network controls nephrocan expression and midgut patterning.

Hou J, Wei W, Saund RS, Xiang P, Cunningham TJ, Yi Y, Alder O, Lu DY, Savory JG, Krentz NA, Montpetit R, Cullum R, Hofs N, Lohnes D, Humphries RK, Yamanaka Y, Duester G, Saijoh Y, Hoodless PA.

Development. 2014 Oct;141(19):3772-81. doi: 10.1242/dev.108274. Epub 2014 Sep 10.

17.

Coxsackievirus-induced miR-21 disrupts cardiomyocyte interactions via the downregulation of intercalated disk components.

Ye X, Zhang HM, Qiu Y, Hanson PJ, Hemida MG, Wei W, Hoodless PA, Chu F, Yang D.

PLoS Pathog. 2014 Apr 10;10(4):e1004070. doi: 10.1371/journal.ppat.1004070. eCollection 2014 Apr.

18.

A Notch-dependent transcriptional hierarchy promotes mesenchymal transdifferentiation in the cardiac cushion.

Chang AC, Garside VC, Fournier M, Smrz J, Vrljicak P, Umlandt P, Fuller M, Robertson G, Zhao Y, Tam A, Jones SJ, Marra MA, Hoodless PA, Karsan A.

Dev Dyn. 2014 Jul;243(7):894-905. doi: 10.1002/dvdy.24127. Epub 2014 Apr 17.

19.

IFPA Meeting 2013 Workshop Report II: use of 'omics' in understanding placental development, bioinformatics tools for gene expression analysis, planning and coordination of a placenta research network, placental imaging, evolutionary approaches to understanding pre-eclampsia.

Ackerman WE 4th, Adamson L, Carter AM, Collins S, Cox B, Elliot MG, Ermini L, Gruslin A, Hoodless PA, Huang J, Kniss DA, McGowen MR, Post M, Rice G, Robinson W, Sadovsky Y, Salafia C, Salomon C, Sled JG, Todros T, Wildman DE, Zamudio S, Lash GE.

Placenta. 2014 Feb;35 Suppl:S10-4. doi: 10.1016/j.placenta.2013.11.011. Epub 2013 Nov 28.

PMID:
24315655
20.

Delineating MEIS1 cis-regulatory elements active in hematopoietic cells.

Xiang P, Wei W, Lo C, Rosten P, Hou J, Hoodless PA, Bilenky M, Bonifer C, Cockerill PN, Kirkpatrick A, Gottgens B, Hirst M, Humphries KR.

Leukemia. 2014 Feb;28(2):433-6. doi: 10.1038/leu.2013.287. Epub 2013 Oct 7. No abstract available.

PMID:
24097337
21.

Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies.

Swanson L, Robertson G, Mungall KL, Butterfield YS, Chiu R, Corbett RD, Docking TR, Hogge D, Jackman SD, Moore RA, Mungall AJ, Nip KM, Parker JD, Qian JQ, Raymond A, Sung S, Tam A, Thiessen N, Varhol R, Wang S, Yorukoglu D, Zhao Y, Hoodless PA, Sahinalp SC, Karsan A, Birol I.

BMC Genomics. 2013 Aug 14;14:550. doi: 10.1186/1471-2164-14-550.

22.

Genome-wide microRNA and messenger RNA profiling in rodent liver development implicates mir302b and mir20a in repressing transforming growth factor-beta signaling.

Wei W, Hou J, Alder O, Ye X, Lee S, Cullum R, Chu A, Zhao Y, Warner SM, Knight DA, Yang D, Jones SJ, Marra MA, Hoodless PA.

Hepatology. 2013 Jun;57(6):2491-501. doi: 10.1002/hep.26252. Epub 2013 Apr 26.

PMID:
23315977
23.

Identification and analysis of murine pancreatic islet enhancers.

Tennant BR, Robertson AG, Kramer M, Li L, Zhang X, Beach M, Thiessen N, Chiu R, Mungall K, Whiting CJ, Sabatini PV, Kim A, Gottardo R, Marra MA, Lynn FC, Jones SJ, Hoodless PA, Hoffman BG.

Diabetologia. 2013 Mar;56(3):542-52. doi: 10.1007/s00125-012-2797-5. Epub 2012 Dec 14.

24.

Co-ordinating Notch, BMP, and TGF-β signaling during heart valve development.

Garside VC, Chang AC, Karsan A, Hoodless PA.

Cell Mol Life Sci. 2013 Aug;70(16):2899-917. doi: 10.1007/s00018-012-1197-9. Epub 2012 Nov 16. Review.

25.

The TG-interacting factor TGIF1 regulates stress-induced proinflammatory phenotype of endothelial cells.

Hneino M, Blirando K, Buard V, Tarlet G, Benderitter M, Hoodless P, François A, Milliat F.

J Biol Chem. 2012 Nov 9;287(46):38913-21. doi: 10.1074/jbc.M112.388389. Epub 2012 Sep 20.

26.

Rare copy number variants contribute to congenital left-sided heart disease.

Hitz MP, Lemieux-Perreault LP, Marshall C, Feroz-Zada Y, Davies R, Yang SW, Lionel AC, D'Amours G, Lemyre E, Cullum R, Bigras JL, Thibeault M, Chetaille P, Montpetit A, Khairy P, Overduin B, Klaassen S, Hoodless P, Awadalla P, Hussin J, Idaghdour Y, Nemer M, Stewart AF, Boerkoel C, Scherer SW, Richter A, Dubé MP, Andelfinger G.

PLoS Genet. 2012 Sep;8(9):e1002903. doi: 10.1371/journal.pgen.1002903. Epub 2012 Sep 6. Erratum in: PLoS Genet. 2013 Mar;9(3). doi: 10.1371/annotation/8bc63544-9ed4-42ca-a830-e8058ab13bab. Awadalla, Philip [added]; Hussin, Julie [added]; Idaghdour, Youssef [added].

27.

Twist1 transcriptional targets in the developing atrio-ventricular canal of the mouse.

Vrljicak P, Cullum R, Xu E, Chang AC, Wederell ED, Bilenky M, Jones SJ, Marra MA, Karsan A, Hoodless PA.

PLoS One. 2012;7(7):e40815. doi: 10.1371/journal.pone.0040815. Epub 2012 Jul 16.

28.

The TGF-β/Smad repressor TG-interacting factor 1 (TGIF1) plays a role in radiation-induced intestinal injury independently of a Smad signaling pathway.

Hneino M, François A, Buard V, Tarlet G, Abderrahmani R, Blirando K, Hoodless PA, Benderitter M, Milliat F.

PLoS One. 2012;7(5):e35672. doi: 10.1371/journal.pone.0035672. Epub 2012 May 2.

29.

The transcription factor encyclopedia.

Yusuf D, Butland SL, Swanson MI, Bolotin E, Ticoll A, Cheung WA, Zhang XY, Dickman CT, Fulton DL, Lim JS, Schnabl JM, Ramos OH, Vasseur-Cognet M, de Leeuw CN, Simpson EM, Ryffel GU, Lam EW, Kist R, Wilson MS, Marco-Ferreres R, Brosens JJ, Beccari LL, Bovolenta P, Benayoun BA, Monteiro LJ, Schwenen HD, Grontved L, Wederell E, Mandrup S, Veitia RA, Chakravarthy H, Hoodless PA, Mancarelli MM, Torbett BE, Banham AH, Reddy SP, Cullum RL, Liedtke M, Tschan MP, Vaz M, Rizzino A, Zannini M, Frietze S, Farnham PJ, Eijkelenboom A, Brown PJ, Laperrière D, Leprince D, de Cristofaro T, Prince KL, Putker M, del Peso L, Camenisch G, Wenger RH, Mikula M, Rozendaal M, Mader S, Ostrowski J, Rhodes SJ, Van Rechem C, Boulay G, Olechnowicz SW, Breslin MB, Lan MS, Nanan KK, Wegner M, Hou J, Mullen RD, Colvin SC, Noy PJ, Webb CF, Witek ME, Ferrell S, Daniel JM, Park J, Waldman SA, Peet DJ, Taggart M, Jayaraman PS, Karrich JJ, Blom B, Vesuna F, O'Geen H, Sun Y, Gronostajski RM, Woodcroft MW, Hough MR, Chen E, Europe-Finner GN, Karolczak-Bayatti M, Bailey J, Hankinson O, Raman V, LeBrun DP, Biswal S, Harvey CJ, DeBruyne JP, Hogenesch JB, Hevner RF, Héligon C, Luo XM, Blank MC, Millen KJ, Sharlin DS, Forrest D, Dahlman-Wright K, Zhao C, Mishima Y, Sinha S, Chakrabarti R, Portales-Casamar E, Sladek FM, Bradley PH, Wasserman WW.

Genome Biol. 2012;13(3):R24. doi: 10.1186/gb-2012-13-3-r24.

30.

Notch initiates the endothelial-to-mesenchymal transition in the atrioventricular canal through autocrine activation of soluble guanylyl cyclase.

Chang AC, Fu Y, Garside VC, Niessen K, Chang L, Fuller M, Setiadi A, Smrz J, Kyle A, Minchinton A, Marra M, Hoodless PA, Karsan A.

Dev Cell. 2011 Aug 16;21(2):288-300. doi: 10.1016/j.devcel.2011.06.022.

31.

The next generation: using new sequencing technologies to analyse gene regulation.

Cullum R, Alder O, Hoodless PA.

Respirology. 2011 Feb;16(2):210-22. doi: 10.1111/j.1440-1843.2010.01899.x. Review.

PMID:
21077988
32.

De novo assembly and analysis of RNA-seq data.

Robertson G, Schein J, Chiu R, Corbett R, Field M, Jackman SD, Mungall K, Lee S, Okada HM, Qian JQ, Griffith M, Raymond A, Thiessen N, Cezard T, Butterfield YS, Newsome R, Chan SK, She R, Varhol R, Kamoh B, Prabhu AL, Tam A, Zhao Y, Moore RA, Hirst M, Marra MA, Jones SJ, Hoodless PA, Birol I.

Nat Methods. 2010 Nov;7(11):909-12. doi: 10.1038/nmeth.1517. Epub 2010 Oct 10.

PMID:
20935650
33.

Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver.

Hoffman BG, Robertson G, Zavaglia B, Beach M, Cullum R, Lee S, Soukhatcheva G, Li L, Wederell ED, Thiessen N, Bilenky M, Cezard T, Tam A, Kamoh B, Birol I, Dai D, Zhao Y, Hirst M, Verchere CB, Helgason CD, Marra MA, Jones SJ, Hoodless PA.

Genome Res. 2010 Aug;20(8):1037-51. doi: 10.1101/gr.104356.109. Epub 2010 Jun 15.

34.

Expression of two novel transcripts in the mouse definitive endoderm.

Hassan AS, Hou J, Wei W, Hoodless PA.

Gene Expr Patterns. 2010 Feb-Mar;10(2-3):127-34. doi: 10.1016/j.gep.2010.02.001. Epub 2010 Feb 12.

35.

Genomic analysis distinguishes phases of early development of the mouse atrio-ventricular canal.

Vrljicak P, Chang AC, Morozova O, Wederell ED, Niessen K, Marra MA, Karsan A, Hoodless PA.

Physiol Genomics. 2010 Feb 4;40(3):150-7. doi: 10.1152/physiolgenomics.00142.2009. Epub 2009 Dec 1.

36.

Foxh1 and Foxa2 are not required for formation of the midgut and hindgut definitive endoderm.

McKnight KD, Hou J, Hoodless PA.

Dev Biol. 2010 Jan 15;337(2):471-81. doi: 10.1016/j.ydbio.2009.10.040. Epub 2009 Nov 5.

37.

Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding.

Robertson AG, Bilenky M, Tam A, Zhao Y, Zeng T, Thiessen N, Cezard T, Fejes AP, Wederell ED, Cullum R, Euskirchen G, Krzywinski M, Birol I, Snyder M, Hoodless PA, Hirst M, Marra MA, Jones SJ.

Genome Res. 2008 Dec;18(12):1906-17. doi: 10.1101/gr.078519.108. Epub 2008 Sep 11.

38.

Slug is a direct Notch target required for initiation of cardiac cushion cellularization.

Niessen K, Fu Y, Chang L, Hoodless PA, McFadden D, Karsan A.

J Cell Biol. 2008 Jul 28;182(2):315-25. doi: 10.1083/jcb.200710067.

39.

Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing.

Wederell ED, Bilenky M, Cullum R, Thiessen N, Dagpinar M, Delaney A, Varhol R, Zhao Y, Zeng T, Bernier B, Ingham M, Hirst M, Robertson G, Marra MA, Jones S, Hoodless PA.

Nucleic Acids Res. 2008 Aug;36(14):4549-64. doi: 10.1093/nar/gkn382. Epub 2008 Jul 8.

40.

Identification of transcripts with enriched expression in the developing and adult pancreas.

Hoffman BG, Zavaglia B, Witzsche J, Ruiz de Algara T, Beach M, Hoodless PA, Jones SJ, Marra MA, Helgason CD.

Genome Biol. 2008;9(6):R99. doi: 10.1186/gb-2008-9-6-r99. Epub 2008 Jun 14.

41.

Dynamic expression of thyrotropin-releasing hormone in the mouse definitive endoderm.

McKnight KD, Hou J, Hoodless PA.

Dev Dyn. 2007 Oct;236(10):2909-17.

42.

A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE).

Hou J, Charters AM, Lee SC, Zhao Y, Wu MK, Jones SJ, Marra MA, Hoodless PA.

BMC Dev Biol. 2007 Aug 2;7:92.

43.

Identification of a new intrinsically timed developmental checkpoint that reprograms key hematopoietic stem cell properties.

Bowie MB, Kent DG, Dykstra B, McKnight KD, McCaffrey L, Hoodless PA, Eaves CJ.

Proc Natl Acad Sci U S A. 2007 Apr 3;104(14):5878-82. Epub 2007 Mar 22.

44.

Dynamics of expression of growth differentiation factor 15 in normal and PIN development in the mouse.

Noorali S, Kurita T, Woolcock B, de Algara TR, Lo M, Paralkar V, Hoodless P, Vielkind J.

Differentiation. 2007 Apr;75(4):325-36. Epub 2007 Feb 5.

PMID:
17286605
45.

Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines.

Khattra J, Delaney AD, Zhao Y, Siddiqui A, Asano J, McDonald H, Pandoh P, Dhalla N, Prabhu AL, Ma K, Lee S, Ally A, Tam A, Sa D, Rogers S, Charest D, Stott J, Zuyderduyn S, Varhol R, Eaves C, Jones S, Holt R, Hirst M, Hoodless PA, Marra MA.

Genome Res. 2007 Jan;17(1):108-16. Epub 2006 Nov 29.

46.

Hippi is essential for node cilia assembly and Sonic hedgehog signaling.

Houde C, Dickinson RJ, Houtzager VM, Cullum R, Montpetit R, Metzler M, Simpson EM, Roy S, Hayden MR, Hoodless PA, Nicholson DW.

Dev Biol. 2006 Dec 15;300(2):523-33. Epub 2006 Sep 9.

47.

Hematopoietic stem cells proliferate until after birth and show a reversible phase-specific engraftment defect.

Bowie MB, McKnight KD, Kent DG, McCaffrey L, Hoodless PA, Eaves CJ.

J Clin Invest. 2006 Oct;116(10):2808-16.

48.

Embryonic fibroblasts from mice lacking Tgif were defective in cell cycling.

Mar L, Hoodless PA.

Mol Cell Biol. 2006 Jun;26(11):4302-10.

49.

A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells.

Siddiqui AS, Khattra J, Delaney AD, Zhao Y, Astell C, Asano J, Babakaiff R, Barber S, Beland J, Bohacec S, Brown-John M, Chand S, Charest D, Charters AM, Cullum R, Dhalla N, Featherstone R, Gerhard DS, Hoffman B, Holt RA, Hou J, Kuo BY, Lee LL, Lee S, Leung D, Ma K, Matsuo C, Mayo M, McDonald H, Prabhu AL, Pandoh P, Riggins GJ, de Algara TR, Rupert JL, Smailus D, Stott J, Tsai M, Varhol R, Vrljicak P, Wong D, Wu MK, Xie YY, Yang G, Zhang I, Hirst M, Jones SJ, Helgason CD, Simpson EM, Hoodless PA, Marra MA.

Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18485-90. Epub 2005 Dec 13.

50.

Notch activation results in phenotypic and functional changes consistent with endothelial-to-mesenchymal transformation.

Noseda M, McLean G, Niessen K, Chang L, Pollet I, Montpetit R, Shahidi R, Dorovini-Zis K, Li L, Beckstead B, Durand RE, Hoodless PA, Karsan A.

Circ Res. 2004 Apr 16;94(7):910-7. Epub 2004 Feb 26.

PMID:
14988227

Supplemental Content

Loading ...
Support Center