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Items: 26

1.

Seasonal Stability and Dynamics of DNA Methylation in Plants in a Natural Environment.

Ito T, Nishio H, Tarutani Y, Emura N, Honjo MN, Toyoda A, Fujiyama A, Kakutani T, Kudoh H.

Genes (Basel). 2019 Jul 17;10(7). pii: E544. doi: 10.3390/genes10070544.

2.

Publisher Correction: Annual transcriptome dynamics in natural environments reveals plant seasonal adaptation.

Nagano AJ, Kawagoe T, Sugisaka J, Honjo MN, Iwayama K, Kudoh H.

Nat Plants. 2019 Mar;5(3):329. doi: 10.1038/s41477-019-0381-4.

PMID:
30737451
3.

Annual transcriptome dynamics in natural environments reveals plant seasonal adaptation.

Nagano AJ, Kawagoe T, Sugisaka J, Honjo MN, Iwayama K, Kudoh H.

Nat Plants. 2019 Jan;5(1):74-83. doi: 10.1038/s41477-018-0338-z. Epub 2019 Jan 7. Erratum in: Nat Plants. 2019 Mar;5(3):329.

PMID:
30617252
4.

A Survey on Plant Viruses in Natural Brassicaceae Communities Using RNA-Seq.

Kamitani M, Nagano AJ, Honjo MN, Kudoh H.

Microb Ecol. 2019 Jul;78(1):113-121. doi: 10.1007/s00248-018-1271-4. Epub 2018 Oct 24.

PMID:
30357428
5.

The Long-Term "In Natura" Study Sites of Arabidopsis halleri for Plant Transcription and Epigenetic Modification Analyses in Natural Environments.

Kudoh H, Honjo MN, Nishio H, Sugisaka J.

Methods Mol Biol. 2018;1830:41-57. doi: 10.1007/978-1-4939-8657-6_3. Review.

PMID:
30043363
6.

Genetic differentiation in cauline-leaf-specific wettability of a rosette-forming perennial Arabidopsis from two contrasting montane habitats.

Aryal B, Shinohara W, Honjo MN, Kudoh H.

Ann Bot. 2018 Jun 8;121(7):1351-1360. doi: 10.1093/aob/mcy033.

7.

Phylogeographic analysis of the East Asian goldenrod (Solidago virgaurea complex, Asteraceae) reveals hidden ecological diversification with recurrent formation of ecotypes.

Sakaguchi S, Kimura T, Kyan R, Maki M, Nishino T, Ishikawa N, Nagano AJ, Honjo MN, Yasugi M, Kudoh H, Li P, Choi HJ, Chernyagina OA, Ito M.

Ann Bot. 2018 Mar 5;121(3):489-500. doi: 10.1093/aob/mcx182.

8.

RAD-Seq analysis of typical and minor Citrus accessions, including Bhutanese varieties.

Penjor T, Mimura T, Kotoda N, Matsumoto R, Nagano AJ, Honjo MN, Kudoh H, Yamamoto M, Nagano Y.

Breed Sci. 2016 Dec;66(5):797-807. doi: 10.1270/jsbbs.16059. Epub 2016 Nov 29.

9.

The population genomic signature of environmental association and gene flow in an ecologically divergent tree species Metrosideros polymorpha (Myrtaceae).

Izuno A, Kitayama K, Onoda Y, Tsujii Y, Hatakeyama M, Nagano AJ, Honjo MN, Shimizu-Inatsugi R, Kudoh H, Shimizu KK, Isagi Y.

Mol Ecol. 2017 Mar;26(6):1515-1532. doi: 10.1111/mec.14016. Epub 2017 Feb 8.

PMID:
28099775
10.

Genome sequence and analysis of the Japanese morning glory Ipomoea nil.

Hoshino A, Jayakumar V, Nitasaka E, Toyoda A, Noguchi H, Itoh T, Shin-I T, Minakuchi Y, Koda Y, Nagano AJ, Yasugi M, Honjo MN, Kudoh H, Seki M, Kamiya A, Shiraki T, Carninci P, Asamizu E, Nishide H, Tanaka S, Park KI, Morita Y, Yokoyama K, Uchiyama I, Tanaka Y, Tabata S, Shinozaki K, Hayashizaki Y, Kohara Y, Suzuki Y, Sugano S, Fujiyama A, Iida S, Sakakibara Y.

Nat Commun. 2016 Nov 8;7:13295. doi: 10.1038/ncomms13295.

11.

RNA-Seq reveals virus-virus and virus-plant interactions in nature.

Kamitani M, Nagano AJ, Honjo MN, Kudoh H.

FEMS Microbiol Ecol. 2016 Nov;92(11). pii: fiw176. doi: 10.1093/femsec/fiw176. Epub 2016 Aug 21.

12.

Circadian Oscillation of the Lettuce Transcriptome under Constant Light and Light-Dark Conditions.

Higashi T, Aoki K, Nagano AJ, Honjo MN, Fukuda H.

Front Plant Sci. 2016 Jul 27;7:1114. doi: 10.3389/fpls.2016.01114. eCollection 2016.

13.

Correction: Transcriptome Analysis of Plant Hormone-Related Tomato (Solanum lycopersicum) Genes in a Sunlight-Type Plant Factory.

Tanigaki Y, Higashi T, Takayama K, Nagano AJ, Honjo MN, Fukuda H.

PLoS One. 2016 Mar 10;11(3):e0150788. doi: 10.1371/journal.pone.0150788. eCollection 2016. No abstract available.

14.

Detection of Diurnal Variation of Tomato Transcriptome through the Molecular Timetable Method in a Sunlight-Type Plant Factory.

Higashi T, Tanigaki Y, Takayama K, Nagano AJ, Honjo MN, Fukuda H.

Front Plant Sci. 2016 Feb 8;7:87. doi: 10.3389/fpls.2016.00087. eCollection 2016.

15.

Truncated yet functional viral protein produced via RNA polymerase slippage implies underestimated coding capacity of RNA viruses.

Hagiwara-Komoda Y, Choi SH, Sato M, Atsumi G, Abe J, Fukuda J, Honjo MN, Nagano AJ, Komoda K, Nakahara KS, Uyeda I, Naito S.

Sci Rep. 2016 Feb 22;6:21411. doi: 10.1038/srep21411.

16.

Transcriptome Analysis of Plant Hormone-Related Tomato (Solanum lycopersicum) Genes in a Sunlight-Type Plant Factory.

Tanigaki Y, Higashi T, Takayama K, Nagano AJ, Honjo MN, Fukuda H.

PLoS One. 2015 Dec 1;10(12):e0143412. doi: 10.1371/journal.pone.0143412. eCollection 2015. Erratum in: PLoS One. 2016;11(3):e0150788.

17.

Microbial communities on flower surfaces act as signatures of pollinator visitation.

Ushio M, Yamasaki E, Takasu H, Nagano AJ, Fujinaga S, Honjo MN, Ikemoto M, Sakai S, Kudoh H.

Sci Rep. 2015 Mar 3;5:8695. doi: 10.1038/srep08695.

18.

Detection of plant viruses in natural environments by using RNA-Seq.

Nagano AJ, Honjo MN, Mihara M, Sato M, Kudoh H.

Methods Mol Biol. 2015;1236:89-98. doi: 10.1007/978-1-4939-1743-3_8.

PMID:
25287498
19.

Seasonal reactivation enables Cyprinid herpesvirus 3 to persist in a wild host population.

Uchii K, Minamoto T, Honjo MN, Kawabata Z.

FEMS Microbiol Ecol. 2014 Feb;87(2):536-42. doi: 10.1111/1574-6941.12242. Epub 2013 Nov 21.

20.

Reservoirs of Cyprinid herpesvirus 3 (CyHV-3) DNA in sediments of natural lakes and ponds.

Honjo MN, Minamoto T, Kawabata Z.

Vet Microbiol. 2012 Mar 23;155(2-4):183-90. doi: 10.1016/j.vetmic.2011.09.005. Epub 2011 Sep 21.

PMID:
21983526
21.

Nationwide Cyprinid herpesvirus 3 contamination in natural rivers of Japan.

Minamoto T, Honjo MN, Yamanaka H, Uchii K, Kawabata Z.

Res Vet Sci. 2012 Aug;93(1):508-14. doi: 10.1016/j.rvsc.2011.06.004. Epub 2011 Jul 1.

PMID:
21723573
22.

Transmission dynamics of an emerging infectious disease in wildlife through host reproductive cycles.

Uchii K, Telschow A, Minamoto T, Yamanaka H, Honjo MN, Matsui K, Kawabata Z.

ISME J. 2011 Feb;5(2):244-51. doi: 10.1038/ismej.2010.123. Epub 2010 Aug 26.

23.

Detection of cyprinid herpesvirus-3 DNA in lake plankton.

Minamoto T, Honjo MN, Yamanaka H, Tanaka N, Itayama T, Kawabata Z.

Res Vet Sci. 2011 Jun;90(3):530-2. doi: 10.1016/j.rvsc.2010.07.006. Epub 2010 Aug 9.

PMID:
20692005
24.

Quantification of cyprinid herpesvirus 3 in environmental water by using an external standard virus.

Honjo MN, Minamoto T, Matsui K, Uchii K, Yamanaka H, Suzuki AA, Kohmatsu Y, Iida T, Kawabata Z.

Appl Environ Microbiol. 2010 Jan;76(1):161-8. doi: 10.1128/AEM.02011-09. Epub 2009 Nov 13.

25.

Seasonal distribution of cyprinid herpesvirus 3 in Lake Biwa, Japan.

Minamoto T, Honjo MN, Kawabata Z.

Appl Environ Microbiol. 2009 Nov;75(21):6900-4. doi: 10.1128/AEM.01411-09. Epub 2009 Sep 4.

26.

Detection of cyprinid herpesvirus 3 DNA in river water during and after an outbreak.

Minamoto T, Honjo MN, Uchii K, Yamanaka H, Suzuki AA, Kohmatsu Y, Iida T, Kawabata Z.

Vet Microbiol. 2009 Mar 30;135(3-4):261-6. doi: 10.1016/j.vetmic.2008.09.081. Epub 2008 Oct 9.

PMID:
19013729

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