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Items: 1 to 50 of 68

1.

The Relationship Between Microbial Community Structures and Environmental Parameters Revealed by Metagenomic Analysis of Hot Spring Water in the Kirishima Area, Japan.

Nishiyama E, Higashi K, Mori H, Suda K, Nakamura H, Omori S, Maruyama S, Hongoh Y, Kurokawa K.

Front Bioeng Biotechnol. 2018 Dec 20;6:202. doi: 10.3389/fbioe.2018.00202. eCollection 2018.

2.

Ectosymbiotic bacterial microbiota densely colonize the surface of thelastomatid nematodes in the gut of the wood-feeding cockroach Panesthia angustipennis.

Murakami T, Onouchi S, Igai K, Ohkuma M, Hongoh Y.

FEMS Microbiol Ecol. 2019 Feb 1;95(2). doi: 10.1093/femsec/fiy238.

PMID:
30561598
3.

Genome analyses of uncultured TG2/ZB3 bacteria in 'Margulisbacteria' specifically attached to ectosymbiotic spirochetes of protists in the termite gut.

Utami YD, Kuwahara H, Igai K, Murakami T, Sugaya K, Morikawa T, Nagura Y, Yuki M, Deevong P, Inoue T, Kihara K, Lo N, Yamada A, Ohkuma M, Hongoh Y.

ISME J. 2019 Feb;13(2):455-467. doi: 10.1038/s41396-018-0297-4. Epub 2018 Oct 4.

PMID:
30287885
4.

Metagenomic analyses highlight the symbiotic association between the glacier stonefly Andiperla willinki and its bacterial gut community.

Murakami T, Segawa T, Takeuchi N, Barcaza Sepúlveda G, Labarca P, Kohshima S, Hongoh Y.

Environ Microbiol. 2018 Nov;20(11):4170-4183. doi: 10.1111/1462-2920.14420. Epub 2018 Oct 22.

PMID:
30246365
5.

Parallel and Gradual Genome Erosion in the Blattabacterium Endosymbionts of Mastotermes darwiniensis and Cryptocercus Wood Roaches.

Kinjo Y, Bourguignon T, Tong KJ, Kuwahara H, Lim SJ, Yoon KB, Shigenobu S, Park YC, Nalepa CA, Hongoh Y, Ohkuma M, Lo N, Tokuda G.

Genome Biol Evol. 2018 Jun 1;10(6):1622-1630. doi: 10.1093/gbe/evy110.

6.

Phylogenetic Diversity and Single-Cell Genome Analysis of "Melainabacteria", a Non-Photosynthetic Cyanobacterial Group, in the Termite Gut.

Utami YD, Kuwahara H, Murakami T, Morikawa T, Sugaya K, Kihara K, Yuki M, Lo N, Deevong P, Hasin S, Boonriam W, Inoue T, Yamada A, Ohkuma M, Hongoh Y.

Microbes Environ. 2018 Mar 29;33(1):50-57. doi: 10.1264/jsme2.ME17137. Epub 2018 Mar 8.

7.

Draft Genome Sequence of Lactococcus sp. Strain Rs-Y01, Isolated from the Gut of the Lower Termite Reticulitermes speratus.

Yuki M, Sakamoto M, Kuwahara H, Hongoh Y, Ohkuma M.

Genome Announc. 2017 Sep 21;5(38). pii: e00999-17. doi: 10.1128/genomeA.00999-17.

8.

Discovery of ectosymbiotic Endomicrobium lineages associated with protists in the gut of stolotermitid termites.

Izawa K, Kuwahara H, Sugaya K, Lo N, Ohkuma M, Hongoh Y.

Environ Microbiol Rep. 2017 Aug;9(4):411-418. doi: 10.1111/1758-2229.12549. Epub 2017 Jun 27.

PMID:
28556617
9.

Discovery and Complete Genome Sequence of a Bacteriophage from an Obligate Intracellular Symbiont of a Cellulolytic Protist in the Termite Gut.

Pramono AK, Kuwahara H, Itoh T, Toyoda A, Yamada A, Hongoh Y.

Microbes Environ. 2017 Jun 24;32(2):112-117. doi: 10.1264/jsme2.ME16175. Epub 2017 Mar 17.

10.

Bacterial Microbiota Associated with the Glacier Ice Worm Is Dominated by Both Worm-Specific and Glacier-Derived Facultative Lineages.

Murakami T, Segawa T, Dial R, Takeuchi N, Kohshima S, Hongoh Y.

Microbes Environ. 2017 Mar 31;32(1):32-39. doi: 10.1264/jsme2.ME16158. Epub 2017 Mar 9.

11.

Phylogenomics and Morphology of Extinct Paleognaths Reveal the Origin and Evolution of the Ratites.

Yonezawa T, Segawa T, Mori H, Campos PF, Hongoh Y, Endo H, Akiyoshi A, Kohno N, Nishida S, Wu J, Jin H, Adachi J, Kishino H, Kurokawa K, Nogi Y, Tanabe H, Mukoyama H, Yoshida K, Rasoamiaramanana A, Yamagishi S, Hayashi Y, Yoshida A, Koike H, Akishinonomiya F, Willerslev E, Hasegawa M.

Curr Biol. 2017 Jan 9;27(1):68-77. doi: 10.1016/j.cub.2016.10.029. Epub 2016 Dec 15.

12.

Genome of 'Ca. Desulfovibrio trichonymphae', an H2-oxidizing bacterium in a tripartite symbiotic system within a protist cell in the termite gut.

Kuwahara H, Yuki M, Izawa K, Ohkuma M, Hongoh Y.

ISME J. 2017 Mar;11(3):766-776. doi: 10.1038/ismej.2016.143. Epub 2016 Nov 1.

13.

Comparison of Intracellular "Ca. Endomicrobium Trichonymphae" Genomovars Illuminates the Requirement and Decay of Defense Systems against Foreign DNA.

Izawa K, Kuwahara H, Kihara K, Yuki M, Lo N, Itoh T, Ohkuma M, Hongoh Y.

Genome Biol Evol. 2016 Oct 13;8(10):3099-3107.

14.

Nitrogen fixation and nifH diversity in human gut microbiota.

Igai K, Itakura M, Nishijima S, Tsurumaru H, Suda W, Tsutaya T, Tomitsuka E, Tadokoro K, Baba J, Odani S, Natsuhara K, Morita A, Yoneda M, Greenhill AR, Horwood PF, Inoue J, Ohkuma M, Hongoh Y, Yamamoto T, Siba PM, Hattori M, Minamisawa K, Umezaki M.

Sci Rep. 2016 Aug 24;6:31942. doi: 10.1038/srep31942.

15.

Restriction-Modification Systems as Mobile Genetic Elements in the Evolution of an Intracellular Symbiont.

Zheng H, Dietrich C, Hongoh Y, Brune A.

Mol Biol Evol. 2016 Mar;33(3):721-5. doi: 10.1093/molbev/msv264. Epub 2015 Nov 13.

16.

Dominant ectosymbiotic bacteria of cellulolytic protists in the termite gut also have the potential to digest lignocellulose.

Yuki M, Kuwahara H, Shintani M, Izawa K, Sato T, Starns D, Hongoh Y, Ohkuma M.

Environ Microbiol. 2015 Dec;17(12):4942-53. doi: 10.1111/1462-2920.12945. Epub 2015 Aug 4.

PMID:
26079531
17.

Acetogenesis from H2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist.

Ohkuma M, Noda S, Hattori S, Iida T, Yuki M, Starns D, Inoue J, Darby AC, Hongoh Y.

Proc Natl Acad Sci U S A. 2015 Aug 18;112(33):10224-30. doi: 10.1073/pnas.1423979112. Epub 2015 May 15.

18.

Census of bacterial microbiota associated with the glacier ice worm Mesenchytraeus solifugus.

Murakami T, Segawa T, Bodington D, Dial R, Takeuchi N, Kohshima S, Hongoh Y.

FEMS Microbiol Ecol. 2015 Mar;91(3). pii: fiv003. doi: 10.1093/femsec/fiv003. Epub 2015 Jan 11.

PMID:
25764456
19.

Characteristics of refractory gastroesophageal reflux disease (GERD) symptoms -is switching proton pump inhibitors based on the patient's CYP2C19 genotype an effective management strategy?

Takeuchi T, Oota K, Harada S, Edogawa S, Kojima Y, Sanomura M, Sakaguchi M, Hayashi K, Hongoh Y, Itabashi T, Kitae H, Hoshimoto M, Takeuchi N, Higuchi K.

Intern Med. 2015;54(2):97-105. doi: 10.2169/internalmedicine.54.3412. Epub 2015 Jan 15.

20.

Distribution and evolution of nitrogen fixation genes in the phylum Bacteroidetes.

Inoue J, Oshima K, Suda W, Sakamoto M, Iino T, Noda S, Hongoh Y, Hattori M, Ohkuma M.

Microbes Environ. 2015;30(1):44-50. doi: 10.1264/jsme2.ME14142. Epub 2015 Jan 16.

21.

Two different rickettsial bacteria invading Volvox carteri.

Kawafune K, Hongoh Y, Hamaji T, Sakamoto T, Kurata T, Hirooka S, Miyagishima SY, Nozaki H.

PLoS One. 2015 Feb 11;10(2):e0116192. doi: 10.1371/journal.pone.0116192. eCollection 2015.

22.

Dysgonomonas termitidis sp. nov., isolated from the gut of the subterranean termite Reticulitermes speratus.

Pramono AK, Sakamoto M, Iino T, Hongoh Y, Ohkuma M.

Int J Syst Evol Microbiol. 2015 Feb;65(Pt 2):681-5. doi: 10.1099/ijs.0.070391-0. Epub 2014 Nov 26.

PMID:
25428419
23.

Aphid gene of bacterial origin encodes a protein transported to an obligate endosymbiont.

Nakabachi A, Ishida K, Hongoh Y, Ohkuma M, Miyagishima SY.

Curr Biol. 2014 Jul 21;24(14):R640-R641. doi: 10.1016/j.cub.2014.06.038. No abstract available.

24.

Draft Genome Sequences of Vibrio sp. Strains Isolated from Tetrodotoxin-Bearing Scavenging Gastropod.

Kudo T, Kawauchi A, Nakahara T, Zhang X, Taniyama S, Takatani T, Arakawa O, Oshima K, Suda W, Kitamura K, Iida T, Iino T, Inoue T, Hongoh Y, Hattori M, Ohkuma M.

Genome Announc. 2014 Jun 19;2(3). pii: e00623-14. doi: 10.1128/genomeA.00623-14.

25.

Draft Genome Sequences of Geomicrobium sp. Strains JCM 19037, JCM 19038, JCM 19039, and JCM 19055, Isolated from Aquatic Samples.

Kudo T, Nakahara T, Zhang X, Taniyama S, Arakawa O, Murase S, Nakata H, Oshima K, Suda W, Kitamura K, Iida T, Oshida Y, Inoue T, Hongoh Y, Hattori M, Ohkuma M.

Genome Announc. 2014 Jun 19;2(3). pii: e00622-14. doi: 10.1128/genomeA.00622-14.

26.

The nitrogen cycle in cryoconites: naturally occurring nitrification-denitrification granules on a glacier.

Segawa T, Ishii S, Ohte N, Akiyoshi A, Yamada A, Maruyama F, Li Z, Hongoh Y, Takeuchi N.

Environ Microbiol. 2014 Oct;16(10):3250-62. doi: 10.1111/1462-2920.12543. Epub 2014 Jul 15.

PMID:
24946985
27.

Draft Genome Sequences of Psychrobacter Strains JCM 18900, JCM 18901, JCM 18902, and JCM 18903, Isolated Preferentially from Frozen Aquatic Organisms.

Kudo T, Kidera A, Kida M, Kawauchi A, Shimizu R, Nakahara T, Zhang X, Yamada A, Amano M, Hamada Y, Taniyama S, Arakawa O, Yoshida A, Oshima K, Suda W, Kuwahara H, Nogi Y, Kitamura K, Yuki M, Iida T, Moriya S, Inoue T, Hongoh Y, Hattori M, Ohkuma M.

Genome Announc. 2014 Apr 3;2(2). pii: e00280-14. doi: 10.1128/genomeA.00280-14.

28.

Who digests the lignocellulose?

Hongoh Y.

Environ Microbiol. 2014 Sep;16(9):2644-5. doi: 10.1111/1462-2920.12449. Epub 2014 Apr 4. No abstract available.

PMID:
24698411
29.

Draft Genome Sequences of Cyclodextrin-Producing Alkaliphilic Bacillus Strains JCM 19045, JCM 19046, and JCM 19047.

Kudo T, Sakamoto K, Akinaga M, Kawauchi A, Nakahara T, Zhang X, Yamada A, Oshima K, Suda W, Kuwahara H, Nakamura N, Nogi Y, Kitamura K, Yuki M, Iida T, Moriya S, Inoue T, Hongoh Y, Hattori M, Ohkuma M.

Genome Announc. 2014 Mar 20;2(2). pii: e00211-14. doi: 10.1128/genomeA.00211-14.

30.

Horizontal gene acquisition of Liberibacter plant pathogens from a bacteriome-confined endosymbiont of their psyllid vector.

Nakabachi A, Nikoh N, Oshima K, Inoue H, Ohkuma M, Hongoh Y, Miyagishima SY, Hattori M, Fukatsu T.

PLoS One. 2013 Dec 4;8(12):e82612. doi: 10.1371/journal.pone.0082612. eCollection 2013.

31.

Intranuclear verrucomicrobial symbionts and evidence of lateral gene transfer to the host protist in the termite gut.

Sato T, Kuwahara H, Fujita K, Noda S, Kihara K, Yamada A, Ohkuma M, Hongoh Y.

ISME J. 2014 May;8(5):1008-19. doi: 10.1038/ismej.2013.222. Epub 2013 Dec 12.

32.

Comprehensive phylogenetic diversity of [FeFe]-hydrogenase genes in termite gut microbiota.

Zheng H, Bodington D, Zhang C, Miyanaga K, Tanji Y, Hongoh Y, Xing XH.

Microbes Environ. 2013;28(4):491-4. Epub 2013 Nov 15.

33.

Sporomusa intestinalis sp. nov., a homoacetogenic bacterium isolated from the gut of a higher termite, Termes comis (Termitinae).

Hattori S, Hongoh Y, Itoh T, Deevong P, Trakulnaleamsai S, Noparatnaraporn N, Kudo T, Ohkuma M.

J Gen Appl Microbiol. 2013;59(4):321-4. No abstract available.

34.

Molecular diversity of endosymbiotic Nephroselmis (Nephroselmidophyceae) in Hatena arenicola (Katablepharidophycota).

Yamaguchi H, Nakayama T, Hongoh Y, Kawachi M, Inouye I.

J Plant Res. 2014 Mar;127(2):241-7. doi: 10.1007/s10265-013-0591-1. Epub 2013 Aug 25.

PMID:
23979010
35.

Native architecture of the centriole proximal region reveals features underlying its 9-fold radial symmetry.

Guichard P, Hachet V, Majubu N, Neves A, Demurtas D, Olieric N, Fluckiger I, Yamada A, Kihara K, Nishida Y, Moriya S, Steinmetz MO, Hongoh Y, Gönczy P.

Curr Biol. 2013 Sep 9;23(17):1620-8. doi: 10.1016/j.cub.2013.06.061. Epub 2013 Aug 8.

36.

Defensive bacteriome symbiont with a drastically reduced genome.

Nakabachi A, Ueoka R, Oshima K, Teta R, Mangoni A, Gurgui M, Oldham NJ, van Echten-Deckert G, Okamura K, Yamamoto K, Inoue H, Ohkuma M, Hongoh Y, Miyagishima SY, Hattori M, Piel J, Fukatsu T.

Curr Biol. 2013 Aug 5;23(15):1478-84. doi: 10.1016/j.cub.2013.06.027. Epub 2013 Jul 11.

37.

Molecular identification of rickettsial endosymbionts in the non-phagotrophic volvocalean green algae.

Kawafune K, Hongoh Y, Hamaji T, Nozaki H.

PLoS One. 2012;7(2):e31749. doi: 10.1371/journal.pone.0031749. Epub 2012 Feb 21.

38.

Attentional capture by change in direct gaze.

Yokoyama T, Ishibashi K, Hongoh Y, Kita S.

Perception. 2011;40(7):785-97.

PMID:
22128551
39.

Whole-genome sequencing of unculturable bacterium using whole-genome amplification.

Hongoh Y, Toyoda A.

Methods Mol Biol. 2011;733:25-33. doi: 10.1007/978-1-61779-089-8_2.

PMID:
21431760
40.

Toward the functional analysis of uncultivable, symbiotic microorganisms in the termite gut.

Hongoh Y.

Cell Mol Life Sci. 2011 Apr;68(8):1311-25. doi: 10.1007/s00018-011-0648-z. Epub 2011 Mar 2. Review.

PMID:
21365277
41.

Diversity and genomes of uncultured microbial symbionts in the termite gut.

Hongoh Y.

Biosci Biotechnol Biochem. 2010;74(6):1145-51. Epub 2010 Jun 7. Review.

42.

Complex coevolutionary history of symbiotic Bacteroidales bacteria of various protists in the gut of termites.

Noda S, Hongoh Y, Sato T, Ohkuma M.

BMC Evol Biol. 2009 Jul 9;9:158. doi: 10.1186/1471-2148-9-158.

43.

Candidatus Desulfovibrio trichonymphae, a novel intracellular symbiont of the flagellate Trichonympha agilis in termite gut.

Sato T, Hongoh Y, Noda S, Hattori S, Ui S, Ohkuma M.

Environ Microbiol. 2009 Apr;11(4):1007-15. doi: 10.1111/j.1462-2920.2008.01827.x. Epub 2008 Dec 17.

PMID:
19170725
44.

[Symbiotic complex in the termite gut microbial community].

Ohkuma M, Hongoh Y, Noda S.

Tanpakushitsu Kakusan Koso. 2008 Nov;53(14):1841-9. Review. Japanese. No abstract available.

PMID:
19044020
45.

Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut.

Hongoh Y, Sharma VK, Prakash T, Noda S, Toh H, Taylor TD, Kudo T, Sakaki Y, Toyoda A, Hattori M, Ohkuma M.

Science. 2008 Nov 14;322(5904):1108-9. doi: 10.1126/science.1165578.

46.

Inheritance and diversification of symbiotic trichonymphid flagellates from a common ancestor of termites and the cockroach Cryptocercus.

Ohkuma M, Noda S, Hongoh Y, Nalepa CA, Inoue T.

Proc Biol Sci. 2009 Jan 22;276(1655):239-45. doi: 10.1098/rspb.2008.1094.

47.

Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell.

Hongoh Y, Sharma VK, Prakash T, Noda S, Taylor TD, Kudo T, Sakaki Y, Toyoda A, Hattori M, Ohkuma M.

Proc Natl Acad Sci U S A. 2008 Apr 8;105(14):5555-60. doi: 10.1073/pnas.0801389105. Epub 2008 Apr 7.

48.
49.

Evolutionary trend of phylogenetic diversity of nitrogen fixation genes in the gut community of wood-feeding termites.

Yamada A, Inoue T, Noda S, Hongoh Y, Ohkuma M.

Mol Ecol. 2007 Sep;16(18):3768-77.

PMID:
17850544
50.

Candidatus Symbiothrix dinenymphae: bristle-like Bacteroidales ectosymbionts of termite gut protists.

Hongoh Y, Sato T, Noda S, Ui S, Kudo T, Ohkuma M.

Environ Microbiol. 2007 Oct;9(10):2631-5.

PMID:
17803785

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