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Items: 22

1.

A novel plasmid-transcribed regulatory sRNA, QfsR, controls chromosomal polycistronic gene expression in Agrobacterium fabrum.

Diel B, Dequivre M, Wisniewski-Dyé F, Vial L, Hommais F.

Environ Microbiol. 2019 Aug;21(8):3063-3075. doi: 10.1111/1462-2920.14704. Epub 2019 Jun 21.

PMID:
31170322
2.

APERO: a genome-wide approach for identifying bacterial small RNAs from RNA-Seq data.

Leonard S, Meyer S, Lacour S, Nasser W, Hommais F, Reverchon S.

Nucleic Acids Res. 2019 Sep 5;47(15):e88. doi: 10.1093/nar/gkz485.

3.

Erratum to: Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans.

Koechler S, Cleiss-Arnold J, Proux C, Sismeiro O, Dillies MA, Goulhen-Chollet F, Hommais F, Lièvremont D, Arsène-Ploetze F, Coppé JY, Bertin PN.

BMC Microbiol. 2017 Mar 28;17(1):74. doi: 10.1186/s12866-017-0976-8. No abstract available.

4.

Plant-phytopathogen interactions: bacterial responses to environmental and plant stimuli.

Leonard S, Hommais F, Nasser W, Reverchon S.

Environ Microbiol. 2017 May;19(5):1689-1716. doi: 10.1111/1462-2920.13611. Epub 2017 Jan 23. Review.

PMID:
27878915
5.

Coordinated Regulation of Species-Specific Hydroxycinnamic Acid Degradation and Siderophore Biosynthesis Pathways in Agrobacterium fabrum.

Baude J, Vial L, Villard C, Campillo T, Lavire C, Nesme X, Hommais F.

Appl Environ Microbiol. 2016 May 31;82(12):3515-3524. doi: 10.1128/AEM.00419-16. Print 2016 Jun 15.

6.

Global transcriptional response of Dickeya dadantii to environmental stimuli relevant to the plant infection.

Jiang X, Zghidi-Abouzid O, Oger-Desfeux C, Hommais F, Greliche N, Muskhelishvili G, Nasser W, Reverchon S.

Environ Microbiol. 2016 Nov;18(11):3651-3672. doi: 10.1111/1462-2920.13267. Epub 2016 Apr 28.

PMID:
26940633
7.

Small RNA Deep-Sequencing Analyses Reveal a New Regulator of Virulence in Agrobacterium fabrum C58.

Dequivre M, Diel B, Villard C, Sismeiro O, Durot M, Coppée JY, Nesme X, Vial L, Hommais F.

Mol Plant Microbe Interact. 2015 May;28(5):580-9. doi: 10.1094/MPMI-12-14-0380-FI.

8.

Analysis of hydroxycinnamic acid degradation in Agrobacterium fabrum reveals a coenzyme A-dependent, beta-oxidative deacetylation pathway.

Campillo T, Renoud S, Kerzaon I, Vial L, Baude J, Gaillard V, Bellvert F, Chamignon C, Comte G, Nesme X, Lavire C, Hommais F.

Appl Environ Microbiol. 2014 Jun;80(11):3341-9. doi: 10.1128/AEM.00475-14. Epub 2014 Mar 21.

9.

Structural basis for selective GABA binding in bacterial pathogens.

Planamente S, Mondy S, Hommais F, Vigouroux A, Moréra S, Faure D.

Mol Microbiol. 2012 Dec;86(5):1085-99. doi: 10.1111/mmi.12043. Epub 2012 Oct 9.

10.

Genomic species are ecological species as revealed by comparative genomics in Agrobacterium tumefaciens.

Lassalle F, Campillo T, Vial L, Baude J, Costechareyre D, Chapulliot D, Shams M, Abrouk D, Lavire C, Oger-Desfeux C, Hommais F, Guéguen L, Daubin V, Muller D, Nesme X.

Genome Biol Evol. 2011;3:762-81. doi: 10.1093/gbe/evr070. Epub 2011 Jul 27.

11.

lpxC and yafS are the most suitable internal controls to normalize real time RT-qPCR expression in the phytopathogenic bacteria Dickeya dadantii.

Hommais F, Zghidi-Abouzid O, Oger-Desfeux C, Pineau-Chapelle E, Van Gijsegem F, Nasser W, Reverchon S.

PLoS One. 2011;6(5):e20269. doi: 10.1371/journal.pone.0020269. Epub 2011 May 26.

12.

Structure, function, and evolution of the Thiomonas spp. genome.

Arsène-Ploetze F, Koechler S, Marchal M, Coppée JY, Chandler M, Bonnefoy V, Brochier-Armanet C, Barakat M, Barbe V, Battaglia-Brunet F, Bruneel O, Bryan CG, Cleiss-Arnold J, Cruveiller S, Erhardt M, Heinrich-Salmeron A, Hommais F, Joulian C, Krin E, Lieutaud A, Lièvremont D, Michel C, Muller D, Ortet P, Proux C, Siguier P, Roche D, Rouy Z, Salvignol G, Slyemi D, Talla E, Weiss S, Weissenbach J, Médigue C, Bertin PN.

PLoS Genet. 2010 Feb 26;6(2):e1000859. doi: 10.1371/journal.pgen.1000859.

13.

Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans.

Koechler S, Cleiss-Arnold J, Proux C, Sismeiro O, Dillies MA, Goulhen-Chollet F, Hommais F, Lièvremont D, Arsène-Ploetze F, Coppée JY, Bertin PN.

BMC Microbiol. 2010 Feb 18;10:53. doi: 10.1186/1471-2180-10-53. Erratum in: BMC Microbiol. 2017 Mar 28;17 (1):74.

14.

PecS is a global regulator of the symptomatic phase in the phytopathogenic bacterium Erwinia chrysanthemi 3937.

Hommais F, Oger-Desfeux C, Van Gijsegem F, Castang S, Ligori S, Expert D, Nasser W, Reverchon S.

J Bacteriol. 2008 Nov;190(22):7508-22. doi: 10.1128/JB.00553-08. Epub 2008 Sep 12.

15.

Single-nucleotide polymorphism phylotyping of Escherichia coli.

Hommais F, Pereira S, Acquaviva C, Escobar-Páramo P, Denamur E.

Appl Environ Microbiol. 2005 Aug;71(8):4784-92.

16.

GadE (YhiE): a novel activator involved in the response to acid environment in Escherichia coli.

Hommais F, Krin E, Coppée JY, Lacroix C, Yeramian E, Danchin A, Bertin P.

Microbiology. 2004 Jan;150(Pt 1):61-72.

PMID:
14702398
17.

The FimH A27V mutation is pathoadaptive for urovirulence in Escherichia coli B2 phylogenetic group isolates.

Hommais F, Gouriou S, Amorin C, Bui H, Rahimy MC, Picard B, Denamur E.

Infect Immun. 2003 Jun;71(6):3619-22.

18.

Regulation of bacterial motility in response to low pH in Escherichia coli: the role of H-NS protein.

Soutourina OA, Krin E, Laurent-Winter C, Hommais F, Danchin A, Bertin PN.

Microbiology. 2002 May;148(Pt 5):1543-51.

PMID:
11988529
19.

Effect of mild acid pH on the functioning of bacterial membranes in Vibrio cholerae.

Hommais F, Laurent-Winter C, Labas V, Krin E, Tendeng C, Soutourina O, Danchin A, Bertin P.

Proteomics. 2002 May;2(5):571-9.

PMID:
11987131
20.

Description and application of a rapid method for genomic DNA direct sequencing.

Krin E, Hommais F, Soutourina O, Ngo S, Danchin A, Bertin P.

FEMS Microbiol Lett. 2001 May 30;199(2):229-33.

21.

Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS.

Hommais F, Krin E, Laurent-Winter C, Soutourina O, Malpertuy A, Le Caer JP, Danchin A, Bertin P.

Mol Microbiol. 2001 Apr;40(1):20-36.

22.

H-NS and H-NS-like proteins in Gram-negative bacteria and their multiple role in the regulation of bacterial metabolism.

Bertin P, Hommais F, Krin E, Soutourina O, Tendeng C, Derzelle S, Danchin A.

Biochimie. 2001 Feb;83(2):235-41.

PMID:
11278074

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