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Items: 1 to 50 of 96

1.

Population Genetics of the Highly Polymorphic RPP8 Gene Family.

MacQueen A, Tian D, Chang W, Holub E, Kreitman M, Bergelson J.

Genes (Basel). 2019 Sep 8;10(9). pii: E691. doi: 10.3390/genes10090691.

2.

Transgressive segregation reveals mechanisms of Arabidopsis immunity to Brassica-infecting races of white rust (Albugo candida).

Cevik V, Boutrot F, Apel W, Robert-Seilaniantz A, Furzer OJ, Redkar A, Castel B, Kover PX, Prince DC, Holub EB, Jones JDG.

Proc Natl Acad Sci U S A. 2019 Feb 12;116(7):2767-2773. doi: 10.1073/pnas.1812911116. Epub 2019 Jan 28.

3.

The Arabidopsis RRM domain protein EDM3 mediates race-specific disease resistance by controlling H3K9me2-dependent alternative polyadenylation of RPP7 immune receptor transcripts.

Lai Y, Cuzick A, Lu XM, Wang J, Katiyar N, Tsuchiya T, Le Roch K, McDowell JM, Holub E, Eulgem T.

Plant J. 2019 Feb;97(4):646-660. doi: 10.1111/tpj.14148. Epub 2018 Dec 18.

4.

Albugo candida race diversity, ploidy and host-associated microbes revealed using DNA sequence capture on diseased plants in the field.

Jouet A, Saunders DGO, McMullan M, Ward B, Furzer O, Jupe F, Cevik V, Hein I, Thilliez GJA, Holub E, van Oosterhout C, Jones JDG.

New Phytol. 2019 Feb;221(3):1529-1543. doi: 10.1111/nph.15417. Epub 2018 Oct 5.

5.

Restriction associated DNA-genotyping at multiple spatial scales in Arabidopsis lyrata reveals signatures of pathogen-mediated selection.

Buckley J, Holub EB, Koch MA, Vergeer P, Mable BK.

BMC Genomics. 2018 Jun 27;19(1):496. doi: 10.1186/s12864-018-4806-7.

6.

Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium).

Hulin MT, Armitage AD, Vicente JG, Holub EB, Baxter L, Bates HJ, Mansfield JW, Jackson RW, Harrison RJ.

New Phytol. 2018 Jul;219(2):672-696. doi: 10.1111/nph.15182. Epub 2018 May 4.

7.

A Suppressor/Avirulence Gene Combination in Hyaloperonospora arabidopsidis Determines Race Specificity in Arabidopsis thaliana.

Woods-Tör A, Studholme DJ, Cevik V, Telli O, Holub EB, Tör M.

Front Plant Sci. 2018 Mar 1;9:265. doi: 10.3389/fpls.2018.00265. eCollection 2018.

8.

Pathogenic, phenotypic and molecular characterisation of Xanthomonas nasturtii sp. nov. and Xanthomonas floridensis sp. nov., new species of Xanthomonas associated with watercress production in Florida.

Vicente JG, Rothwell S, Holub EB, Studholme DJ.

Int J Syst Evol Microbiol. 2017 Sep;67(9):3645-3654. doi: 10.1099/ijsem.0.002189. Epub 2017 Aug 25.

PMID:
28840805
9.

Genome-Wide Linkage and Association Mapping of Halo Blight Resistance in Common Bean to Race 6 of the Globally Important Bacterial Pathogen.

Tock AJ, Fourie D, Walley PG, Holub EB, Soler A, Cichy KA, Pastor-Corrales MA, Song Q, Porch TG, Hart JP, Vasconcellos RCC, Vicente JG, Barker GC, Miklas PN.

Front Plant Sci. 2017 Jul 7;8:1170. doi: 10.3389/fpls.2017.01170. eCollection 2017.

10.

Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana.

Prince DC, Rallapalli G, Xu D, Schoonbeek HJ, Çevik V, Asai S, Kemen E, Cruz-Mireles N, Kemen A, Belhaj K, Schornack S, Kamoun S, Holub EB, Halkier BA, Jones JD.

BMC Biol. 2017 Mar 20;15(1):20. doi: 10.1186/s12915-017-0360-z.

11.

Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum.

Baroncelli R, Amby DB, Zapparata A, Sarrocco S, Vannacci G, Le Floch G, Harrison RJ, Holub E, Sukno SA, Sreenivasaprasad S, Thon MR.

BMC Genomics. 2016 Aug 5;17:555. doi: 10.1186/s12864-016-2917-6.

12.

R-gene variation across Arabidopsis lyrata subspecies: effects of population structure, selection and mating system.

Buckley J, Kilbride E, Cevik V, Vicente JG, Holub EB, Mable BK.

BMC Evol Biol. 2016 May 5;16:93. doi: 10.1186/s12862-016-0665-5.

13.

Molecular Diversity of Anthracnose Pathogen Populations Associated with UK Strawberry Production Suggests Multiple Introductions of Three Different Colletotrichum Species.

Baroncelli R, Zapparata A, Sarrocco S, Sukno SA, Lane CR, Thon MR, Vannacci G, Holub E, Sreenivasaprasad S.

PLoS One. 2015 Jun 18;10(6):e0129140. doi: 10.1371/journal.pone.0129140. eCollection 2015.

14.

Autoimmunity conferred by chs3-2D relies on CSA1, its adjacent TNL-encoding neighbour.

Xu F, Zhu C, Cevik V, Johnson K, Liu Y, Sohn K, Jones JD, Holub EB, Li X.

Sci Rep. 2015 Mar 5;5:8792. doi: 10.1038/srep08792.

15.

Evidence for suppression of immunity as a driver for genomic introgressions and host range expansion in races of Albugo candida, a generalist parasite.

McMullan M, Gardiner A, Bailey K, Kemen E, Ward BJ, Cevik V, Robert-Seilaniantz A, Schultz-Larsen T, Balmuth A, Holub E, van Oosterhout C, Jones JD.

Elife. 2015 Feb 27;4. doi: 10.7554/eLife.04550.

16.

Draft Genome Sequence of Colletotrichum acutatum Sensu Lato (Colletotrichum fioriniae).

Baroncelli R, Sreenivasaprasad S, Sukno SA, Thon MR, Holub E.

Genome Announc. 2014 Apr 10;2(2). pii: e00112-14. doi: 10.1128/genomeA.00112-14.

17.

Parallel Loss-of-Function at the RPM1 Bacterial Resistance Locus in Arabidopsis thaliana.

Rose L, Atwell S, Grant M, Holub EB.

Front Plant Sci. 2012 Dec 26;3:287. doi: 10.3389/fpls.2012.00287. eCollection 2012.

18.

Xanthomonas campestris pv. campestris (cause of black rot of crucifers) in the genomic era is still a worldwide threat to brassica crops.

Vicente JG, Holub EB.

Mol Plant Pathol. 2013 Jan;14(1):2-18. doi: 10.1111/j.1364-3703.2012.00833.x. Epub 2012 Oct 11.

19.

MEDIATOR25 acts as an integrative hub for the regulation of jasmonate-responsive gene expression in Arabidopsis.

Çevik V, Kidd BN, Zhang P, Hill C, Kiddle S, Denby KJ, Holub EB, Cahill DM, Manners JM, Schenk PM, Beynon J, Kazan K.

Plant Physiol. 2012 Sep;160(1):541-55. doi: 10.1104/pp.112.202697. Epub 2012 Jul 22.

20.

The molecular basis of host specialization in bean pathovars of Pseudomonas syringae.

Baltrus DA, Nishimura MT, Dougherty KM, Biswas S, Mukhtar MS, Vicente J, Holub EB, Dangl JL.

Mol Plant Microbe Interact. 2012 Jul;25(7):877-88. doi: 10.1094/MPMI-08-11-0218.

21.

De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes.

Links MG, Holub E, Jiang RH, Sharpe AG, Hegedus D, Beynon E, Sillito D, Clarke WE, Uzuhashi S, Borhan MH.

BMC Genomics. 2011 Oct 13;12:503. doi: 10.1186/1471-2164-12-503.

22.

Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana.

Kemen E, Gardiner A, Schultz-Larsen T, Kemen AC, Balmuth AL, Robert-Seilaniantz A, Bailey K, Holub E, Studholme DJ, Maclean D, Jones JD.

PLoS Biol. 2011 Jul;9(7):e1001094. doi: 10.1371/journal.pbio.1001094. Epub 2011 Jul 5.

23.

Molecular cloning of ATR5(Emoy2) from Hyaloperonospora arabidopsidis, an avirulence determinant that triggers RPP5-mediated defense in Arabidopsis.

Bailey K, Cevik V, Holton N, Byrne-Richardson J, Sohn KH, Coates M, Woods-Tör A, Aksoy HM, Hughes L, Baxter L, Jones JD, Beynon J, Holub EB, Tör M.

Mol Plant Microbe Interact. 2011 Jul;24(7):827-38. doi: 10.1094/MPMI-12-10-0278.

24.

The effect of mating system on growth of Arabidopsis lyrata in response to inoculation with the biotrophic parasite Albugo candida.

Hoebe PN, Stift M, Holub EB, Mable BK.

J Evol Biol. 2011 Feb;24(2):391-401. doi: 10.1111/j.1420-9101.2010.02177.x. Epub 2010 Nov 22.

25.

WRR4, a broad-spectrum TIR-NB-LRR gene from Arabidopsis thaliana that confers white rust resistance in transgenic oilseed Brassica crops.

Borhan MH, Holub EB, Kindrachuk C, Omidi M, Bozorgmanesh-Frad G, Rimmer SR.

Mol Plant Pathol. 2010 Mar;11(2):283-91. doi: 10.1111/j.1364-3703.2009.00599.x.

26.

A new species of Albugo parasitic to Arabidopsis thaliana reveals new evolutionary patterns in white blister rusts (Albuginaceae).

Thines M, Choi YJ, Kemen E, Ploch S, Holub EB, Shin HD, Jones JD.

Persoonia. 2009 Jun;22:123-8. doi: 10.3767/003158509X457931. Epub 2009 May 26.

27.

The scale of population structure in Arabidopsis thaliana.

Platt A, Horton M, Huang YS, Li Y, Anastasio AE, Mulyati NW, Agren J, Bossdorf O, Byers D, Donohue K, Dunning M, Holub EB, Hudson A, Le Corre V, Loudet O, Roux F, Warthmann N, Weigel D, Rivero L, Scholl R, Nordborg M, Bergelson J, Borevitz JO.

PLoS Genet. 2010 Feb 12;6(2):e1000843. doi: 10.1371/journal.pgen.1000843.

28.

Maintenance of genetic variation in plants and pathogens involves complex networks of gene-for-gene interactions.

Hall SA, Allen RL, Baumber RE, Baxter LA, Fisher K, Bittner-Eddy PD, Rose LE, Holub EB, Beynon JL.

Mol Plant Pathol. 2009 Jul;10(4):449-57. doi: 10.1111/j.1364-3703.2009.00544.x.

29.

WRR4 encodes a TIR-NB-LRR protein that confers broad-spectrum white rust resistance in Arabidopsis thaliana to four physiological races of Albugo candida.

Borhan MH, Gunn N, Cooper A, Gulden S, Tör M, Rimmer SR, Holub EB.

Mol Plant Microbe Interact. 2008 Jun;21(6):757-68. doi: 10.1094/MPMI-21-6-0757.

30.

Basic compatibility of Albugo candida in Arabidopsis thaliana and Brassica juncea causes broad-spectrum suppression of innate immunity.

Cooper AJ, Latunde-Dada AO, Woods-Tör A, Lynn J, Lucas JA, Crute IR, Holub EB.

Mol Plant Microbe Interact. 2008 Jun;21(6):745-56. doi: 10.1094/MPMI-21-6-0745.

31.

Natural variation in innate immunity of a pioneer species.

Holub EB.

Curr Opin Plant Biol. 2007 Aug;10(4):415-24. Epub 2007 Jul 12. Review.

PMID:
17631039
32.

Arabidopsis downy mildew resistance gene RPP27 encodes a receptor-like protein similar to CLAVATA2 and tomato Cf-9.

Tör M, Brown D, Cooper A, Woods-Tör A, Sjölander K, Jones J D G, Holub E B.

Plant Physiol. 2007 Feb;143(2):1079. No abstract available.

33.

EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels.

Eulgem T, Tsuchiya T, Wang XJ, Beasley B, Cuzick A, Tör M, Zhu T, McDowell JM, Holub E, Dangl JL.

Plant J. 2007 Mar;49(5):829-39. Epub 2007 Jan 23.

34.

Evolution of parasitic symbioses between plants and filamentous microorganisms.

Holub EB.

Curr Opin Plant Biol. 2006 Aug;9(4):397-405. Epub 2006 May 22. Review.

PMID:
16714140
35.

An Arabidopsis NPR1-like gene, NPR4, is required for disease resistance.

Liu G, Holub EB, Alonso JM, Ecker JR, Fobert PR.

Plant J. 2005 Jan;41(2):304-18.

36.

The arabidopsis TIR-NB-LRR gene RAC1 confers resistance to Albugo candida (white rust) and is dependent on EDS1 but not PAD4.

Borhan MH, Holub EB, Beynon JL, Rozwadowski K, Rimmer SR.

Mol Plant Microbe Interact. 2004 Jul;17(7):711-9.

37.

Gene expression signatures from three genetically separable resistance gene signaling pathways for downy mildew resistance.

Eulgem T, Weigman VJ, Chang HS, McDowell JM, Holub EB, Glazebrook J, Zhu T, Dangl JL.

Plant Physiol. 2004 Jun;135(2):1129-44. Epub 2004 Jun 4.

38.
39.

Matrix, reinvention in plants: how genetics is unveiling secrets of non-host disease resistance.

Holub EB, Cooper A.

Trends Plant Sci. 2004 May;9(5):211-4. Review. No abstract available.

PMID:
15130544
40.

The maintenance of extreme amino acid diversity at the disease resistance gene, RPP13, in Arabidopsis thaliana.

Rose LE, Bittner-Eddy PD, Langley CH, Holub EB, Michelmore RW, Beynon JL.

Genetics. 2004 Mar;166(3):1517-27.

41.

The role of proteolysis in R gene mediated defence in plants.

Tör M, Yemm A, Holub E.

Mol Plant Pathol. 2003 Jul 1;4(4):287-96. doi: 10.1046/j.1364-3703.2003.00169.x.

PMID:
20569389
42.

Arabidopsis SGT1b is required for defense signaling conferred by several downy mildew resistance genes.

Tör M, Gordon P, Cuzick A, Eulgem T, Sinapidou E, Mert-Türk F, Can C, Dangl JL, Holub EB.

Plant Cell. 2002 May;14(5):993-1003.

43.

The arms race is ancient history in Arabidopsis, the wildflower.

Holub EB.

Nat Rev Genet. 2001 Jul;2(7):516-27. Review.

PMID:
11433358
44.

Genetic analysis in the asexual fungus Aspergillus niger.

Swart K, Debets AJ, Bos CJ, Slakhorst M, Holub EF, Hoekstra RF.

Acta Biol Hung. 2001;52(2-3):335-43. Review.

PMID:
11426868
45.
47.
49.

Genetic and physical mapping of the RPP13 locus, in Arabidopsis, responsible for specific recognition of several Peronospora parasitica (downy mildew) isolates.

Bittner-Eddy P, Can C, Gunn N, Pinel M, Tör M, Crute I, Holub EB, Beynon J.

Mol Plant Microbe Interact. 1999 Sep;12(9):792-802.

50.

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