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Distinct mechanisms of Drosophila CRYPTOCHROME-mediated light-evoked membrane depolarization and in vivo clock resetting.

Baik LS, Au DD, Nave C, Foden AJ, Enrriquez-Villalva WK, Holmes TC.

Proc Natl Acad Sci U S A. 2019 Oct 28. pii: 201905023. doi: 10.1073/pnas.1905023116. [Epub ahead of print]


Fos-CreER Based Genetic Mapping of Forebrain Regions Activated by Acupuncture.

Guo Z, Lin X, Samaniego T, Isreb A, Cao S, Malik S, Holmes TC, Xu X.

J Comp Neurol. 2019 Oct 10. doi: 10.1002/cne.24789. [Epub ahead of print]


CA1-projecting subiculum neurons facilitate object-place learning.

Sun Y, Jin S, Lin X, Chen L, Qiao X, Jiang L, Zhou P, Johnston KG, Golshani P, Nie Q, Holmes TC, Nitz DA, Xu X.

Nat Neurosci. 2019 Nov;22(11):1857-1870. doi: 10.1038/s41593-019-0496-y. Epub 2019 Sep 23.


Functional Reorganization of Local Circuit Connectivity in Superficial Spinal Dorsal Horn with Neuropathic Pain States.

Gong N, Hagopian G, Holmes TC, Luo ZD, Xu X.

eNeuro. 2019 Oct 10;6(5). pii: ENEURO.0272-19.2019. doi: 10.1523/ENEURO.0272-19.2019. Print 2019 Sep/Oct.


Neuregulin and ErbB expression is regulated by development and sensory experience in mouse visual cortex.

Grieco SF, Wang G, Mahapatra A, Lai C, Holmes TC, Xu X.

J Comp Neurol. 2019 Aug 27. doi: 10.1002/cne.24762. [Epub ahead of print]


Multiple Phototransduction Inputs Integrate to Mediate UV Light-evoked Avoidance/Attraction Behavior in Drosophila.

Baik LS, Recinos Y, Chevez JA, Au DD, Holmes TC.

J Biol Rhythms. 2019 Aug;34(4):391-400. doi: 10.1177/0748730419847339. Epub 2019 May 29.


Development of Local Circuit Connections to Hilar Mossy Cells in the Mouse Dentate Gyrus.

Shi Y, Grieco SF, Holmes TC, Xu X.

eNeuro. 2019 Mar 26;6(2). pii: ENEURO.0370-18.2019. doi: 10.1523/ENEURO.0370-18.2019. eCollection 2019 Mar-Apr.


Circadian modulation of light-evoked avoidance/attraction behavior in Drosophila.

Baik LS, Recinos Y, Chevez JA, Holmes TC.

PLoS One. 2018 Aug 14;13(8):e0201927. doi: 10.1371/journal.pone.0201927. eCollection 2018.


Neuregulin directed molecular mechanisms of visual cortical plasticity.

Grieco SF, Holmes TC, Xu X.

J Comp Neurol. 2019 Feb 15;527(3):668-678. doi: 10.1002/cne.24414. Epub 2018 Mar 9. Review.


Opposing and Complementary Topographic Connectivity Gradients Revealed by Quantitative Analysis of Canonical and Noncanonical Hippocampal CA1 Inputs.

Sun Y, Nitz DA, Holmes TC, Xu X.

eNeuro. 2018 Jan 30;5(1). pii: ENEURO.0322-17.2018. doi: 10.1523/ENEURO.0322-17.2018. eCollection 2018 Jan-Feb.


A rhodopsin in the brain functions in circadian photoentrainment in Drosophila.

Ni JD, Baik LS, Holmes TC, Montell C.

Nature. 2017 May 18;545(7654):340-344. doi: 10.1038/nature22325. Epub 2017 May 10.


Local and Long-Range Circuit Connections to Hilar Mossy Cells in the Dentate Gyrus.

Sun Y, Grieco SF, Holmes TC, Xu X.

eNeuro. 2017 Apr 19;4(2). pii: ENEURO.0097-17.2017. doi: 10.1523/ENEURO.0097-17.2017. eCollection 2017 Mar-Apr.


CRYPTOCHROME mediates behavioral executive choice in response to UV light.

Baik LS, Fogle KJ, Roberts L, Galschiodt AM, Chevez JA, Recinos Y, Nguy V, Holmes TC.

Proc Natl Acad Sci U S A. 2017 Jan 24;114(4):776-781. doi: 10.1073/pnas.1607989114. Epub 2017 Jan 6.


Circadian and feeding cues integrate to drive rhythms of physiology in Drosophila insulin-producing cells.

Barber AF, Erion R, Holmes TC, Sehgal A.

Genes Dev. 2016 Dec 1;30(23):2596-2606. doi: 10.1101/gad.288258.116. Epub 2016 Dec 15.


Neuregulin-1/ErbB4 Signaling Regulates Visual Cortical Plasticity.

Sun Y, Ikrar T, Davis MF, Gong N, Zheng X, Luo ZD, Lai C, Mei L, Holmes TC, Gandhi SP, Xu X.

Neuron. 2016 Oct 5;92(1):160-173. doi: 10.1016/j.neuron.2016.08.033. Epub 2016 Sep 15.


Functional Contributions of Strong and Weak Cellular Oscillators to Synchrony and Light-shifted Phase Dynamics.

Roberts L, Leise TL, Welsh DK, Holmes TC.

J Biol Rhythms. 2016 Aug;31(4):337-51. doi: 10.1177/0748730416649550. Epub 2016 May 24.


Noncanonical connections between the subiculum and hippocampal CA1.

Xu X, Sun Y, Holmes TC, López AJ.

J Comp Neurol. 2016 Dec 1;524(17):3666-3673. doi: 10.1002/cne.24024. Epub 2016 May 6. Review.


High-resolution and cell-type-specific photostimulation mapping shows weak excitatory vs. strong inhibitory inputs in the bed nucleus of the stria terminalis.

Xu X, Ikrar T, Sun Y, Santos R, Holmes TC, Francesconi W, Berton F.

J Neurophysiol. 2016 Jun 1;115(6):3204-16. doi: 10.1152/jn.01148.2015. Epub 2016 Apr 6.


dTRPA1 in Non-circadian Neurons Modulates Temperature-dependent Rhythmic Activity in Drosophila melanogaster.

Das A, Holmes TC, Sheeba V.

J Biol Rhythms. 2016 Jun;31(3):272-88. doi: 10.1177/0748730415627037. Epub 2016 Feb 11.


Primary visual cortex shows laminar-specific and balanced circuit organization of excitatory and inhibitory synaptic connectivity.

Xu X, Olivas ND, Ikrar T, Peng T, Holmes TC, Nie Q, Shi Y.

J Physiol. 2016 Apr 1;594(7):1891-910. doi: 10.1113/JP271891. Epub 2016 Mar 11.


Genetic cell targeting uncovers specific neuronal types and distinct subregions in the bed nucleus of the stria terminalis.

Nguyen AQ, Dela Cruz JA, Sun Y, Holmes TC, Xu X.

J Comp Neurol. 2016 Aug 15;524(12):2379-99. doi: 10.1002/cne.23954. Epub 2016 Jan 26.


dTRPA1 Modulates Afternoon Peak of Activity of Fruit Flies Drosophila melanogaster.

Das A, Holmes TC, Sheeba V.

PLoS One. 2015 Jul 30;10(7):e0134213. doi: 10.1371/journal.pone.0134213. eCollection 2015.


Light evokes rapid circadian network oscillator desynchrony followed by gradual phase retuning of synchrony.

Roberts L, Leise TL, Noguchi T, Galschiodt AM, Houl JH, Welsh DK, Holmes TC.

Curr Biol. 2015 Mar 30;25(7):858-67. doi: 10.1016/j.cub.2015.01.056. Epub 2015 Mar 5.


CRYPTOCHROME-mediated phototransduction by modulation of the potassium ion channel β-subunit redox sensor.

Fogle KJ, Baik LS, Houl JH, Tran TT, Roberts L, Dahm NA, Cao Y, Zhou M, Holmes TC.

Proc Natl Acad Sci U S A. 2015 Feb 17;112(7):2245-50. doi: 10.1073/pnas.1416586112. Epub 2015 Feb 2.


Reduced effects of tendon vibration with increased task demand during active, cyclical ankle movements.

Floyd LM, Holmes TC, Dean JC.

Exp Brain Res. 2014 Jan;232(1):283-92. doi: 10.1007/s00221-013-3739-2. Epub 2013 Oct 18.


Molecular insights into the biosynthesis of guadinomine: a type III secretion system inhibitor.

Holmes TC, May AE, Zaleta-Rivera K, Ruby JG, Skewes-Cox P, Fischbach MA, DeRisi JL, Iwatsuki M, Ōmura S, Khosla C.

J Am Chem Soc. 2012 Oct 24;134(42):17797-806. doi: 10.1021/ja308622d. Epub 2012 Oct 10.


Insect circadian clock outputs.

Helfrich-Förster C, Nitabach MN, Holmes TC.

Essays Biochem. 2011 Jun 30;49(1):87-101. doi: 10.1042/BSE0490087. Review.


CRYPTOCHROME is a blue-light sensor that regulates neuronal firing rate.

Fogle KJ, Parson KG, Dahm NA, Holmes TC.

Science. 2011 Mar 18;331(6023):1409-13. doi: 10.1126/science.1199702. Epub 2011 Mar 3.


Novel chemo-sensitizing agent, ERW1227B, impairs cellular motility and enhances cell death in glioblastomas.

Yuan L, Holmes TC, Watts RE, Khosla C, Broekelmann TJ, Mecham R, Zheng H, Izaguirre EW, Rich KM.

J Neurooncol. 2011 Jun;103(2):207-19. doi: 10.1007/s11060-010-0379-2. Epub 2010 Sep 8.


Large ventral lateral neurons modulate arousal and sleep in Drosophila.

Sheeba V, Fogle KJ, Kaneko M, Rashid S, Chou YT, Sharma VK, Holmes TC.

Curr Biol. 2008 Oct 28;18(20):1537-45. doi: 10.1016/j.cub.2008.08.033. Epub 2008 Sep 4.


Axonal injury and regeneration in the adult brain of Drosophila.

Ayaz D, Leyssen M, Koch M, Yan J, Srahna M, Sheeba V, Fogle KJ, Holmes TC, Hassan BA.

J Neurosci. 2008 Jun 4;28(23):6010-21. doi: 10.1523/JNEUROSCI.0101-08.2008.


The Drosophila circadian pacemaker circuit: Pas De Deux or Tarantella?

Sheeba V, Kaneko M, Sharma VK, Holmes TC.

Crit Rev Biochem Mol Biol. 2008 Jan-Feb;43(1):37-61. doi: 10.1080/10409230701829128 . Review.


Pigment dispersing factor-dependent and -independent circadian locomotor behavioral rhythms.

Sheeba V, Sharma VK, Gu H, Chou YT, O'Dowd DK, Holmes TC.

J Neurosci. 2008 Jan 2;28(1):217-27. doi: 10.1523/JNEUROSCI.4087-07.2008.


Functional dissection of a neuronal network required for cuticle tanning and wing expansion in Drosophila.

Luan H, Lemon WC, Peabody NC, Pohl JB, Zelensky PK, Wang D, Nitabach MN, Holmes TC, White BH.

J Neurosci. 2006 Jan 11;26(2):573-84.


Circadian pathway: the other shoe drops.

Holmes TC, Sheeba V.

Curr Biol. 2005 Dec 20;15(24):R987-9. Review.


Membranes, ions, and clocks: testing the Njus-Sulzman-Hastings model of the circadian oscillator.

Nitabach MN, Holmes TC, Blau J.

Methods Enzymol. 2005;393:682-93.


The end of single-molecule envy.

Holmes TC.

Chem Biol. 2005 Jan;12(1):8-10. Review. No abstract available.


Membrane electrical excitability is necessary for the free-running larval Drosophila circadian clock.

Nitabach MN, Sheeba V, Vera DA, Blau J, Holmes TC.

J Neurobiol. 2005 Jan;62(1):1-13.


Ion channel-directed therapies in autonomic neurons: a view from the bench.

Holmes TC.

Clin Auton Res. 2002 Apr;12(2):59-65. Review.


Phylogenetic and expression analysis of the glutamate-receptor-like gene family in Arabidopsis thaliana.

Chiu JC, Brenner ED, DeSalle R, Nitabach MN, Holmes TC, Coruzzi GM.

Mol Biol Evol. 2002 Jul;19(7):1066-82.


Novel peptide-based biomaterial scaffolds for tissue engineering.

Holmes TC.

Trends Biotechnol. 2002 Jan;20(1):16-21. Review.


Is the molecular composition of K(ATP) channels more complex than originally thought?

Pountney DJ, Sun ZQ, Porter LM, Nitabach MN, Nakamura TY, Holmes D, Rosner E, Kaneko M, Manaris T, Holmes TC, Coetzee WA.

J Mol Cell Cardiol. 2001 Aug;33(8):1541-6.


A mechanism for combinatorial regulation of electrical activity: Potassium channel subunits capable of functioning as Src homology 3-dependent adaptors.

Nitabach MN, Llamas DA, Araneda RC, Intile JL, Thompson IJ, Zhou YI, Holmes TC.

Proc Natl Acad Sci U S A. 2001 Jan 16;98(2):705-10. Epub 2001 Jan 9.


Extensive neurite outgrowth and active synapse formation on self-assembling peptide scaffolds.

Holmes TC, de Lacalle S, Su X, Liu G, Rich A, Zhang S.

Proc Natl Acad Sci U S A. 2000 Jun 6;97(12):6728-33.


Expression of voltage-gated potassium channels decreases cellular protein tyrosine phosphorylation.

Holmes TC, Berman K, Swartz JE, Dagan D, Levitan IB.

J Neurosci. 1997 Dec 1;17(23):8964-74.

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