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Items: 1 to 50 of 2003


Comparison of intra- and inter-host genetic diversity in rabies virus during experimental cross-species transmission.

Bonnaud EM, Troupin C, Dacheux L, Holmes EC, Monchatre-Leroy E, Tanguy M, Bouchier C, Cliquet F, Barrat J, Bourhy H.

PLoS Pathog. 2019 Jun 20;15(6):e1007799. doi: 10.1371/journal.ppat.1007799. [Epub ahead of print]


Sustained Wolbachia-mediated blocking of dengue virus isolates following serial passage in Aedes aegypti cell culture.

Koh C, Audsley MD, Di Giallonardo F, Kerton EJ, Young PR, Holmes EC, McGraw EA.

Virus Evol. 2019 Jun 8;5(1):vez012. doi: 10.1093/ve/vez012. eCollection 2019 Jan.


Multi-Compartment Profiling of Bacterial and Host Metabolites Identifies Intestinal Dysbiosis and Its Functional Consequences in the Critically Ill Child.

Wijeyesekera A, Wagner J, De Goffau M, Thurston S, Rodrigues Sabino A, Zaher S, White D, Ridout J, Peters MJ, Ramnarayan P, Branco RG, Torok ME, Valla F, Meyer R, Klein N, Frost G, Parkhill J, Holmes E, Pathan N.

Crit Care Med. 2019 Jun 4. doi: 10.1097/CCM.0000000000003841. [Epub ahead of print]


Bariatric Surgery Modulates Urinary Levels of MicroRNAs Involved in the Regulation of Renal Function.

Alkandari A, Ashrafian H, Sathyapalan T, Darzi A, Holmes E, Athanasiou T, Atkin SL, Gooderham NJ.

Front Endocrinol (Lausanne). 2019 May 21;10:319. doi: 10.3389/fendo.2019.00319. eCollection 2019.


Limited Sustained Local Transmission of HIV-1 CRF01_AE in New South Wales, Australia.

Di Giallonardo F, Pinto AN, Keen P, Shaik A, Carrera A, Salem H, Telfer B, Cooper C, Price K, Selvey C, Holden J, Bachmann N, Lee FJ, Dwyer DE, Duchêne S, Holmes EC, Grulich AE, Kelleher AD.

Viruses. 2019 May 27;11(5). pii: E482. doi: 10.3390/v11050482.


Cognitive Behavioural Therapy for Nightmares for Patients with Persecutory Delusions (Nites): An Assessor-Blind, Pilot Randomized Controlled Trial.

Sheaves B, Holmes EA, Rek S, Taylor KM, Nickless A, Waite F, Germain A, Espie CA, Harrison PJ, Foster R, Freeman D.

Can J Psychiatry. 2019 May 26:706743719847422. doi: 10.1177/0706743719847422. [Epub ahead of print]


Characterization of the urinary metabolic profile of cholangiocarcinoma in a United Kingdom population.

Alsaleh M, Barbera TA, Reeves HL, Cramp ME, Ryder S, Gabra H, Nash K, Shen YL, Holmes E, Williams R, Taylor-Robinson SD.

Hepat Med. 2019 May 3;11:47-67. doi: 10.2147/HMER.S193996. eCollection 2019.


Higher Sun Exposure is Associated With Lower Risk of Pediatric Inflammatory Bowel Disease: A Matched Case-Control Study.

Holmes EA, Ponsonby AL, Pezic A, Ellis JA, Kirkwood CD, Lucas RM; PAID consortium.

J Pediatr Gastroenterol Nutr. 2019 May 15. doi: 10.1097/MPG.0000000000002390. [Epub ahead of print]


Serum metabolic signatures of coronary and carotid atherosclerosis and subsequent cardiovascular disease.

Tzoulaki I, Castagné R, Boulangé CL, Karaman I, Chekmeneva E, Evangelou E, Ebbels TMD, Kaluarachchi MR, Chadeau-Hyam M, Mosen D, Dehghan A, Moayyeri A, Ferreira DLS, Guo X, Rotter JI, Taylor KD, Kavousi M, de Vries PS, Lehne B, Loh M, Hofman A, Nicholson JK, Chambers J, Gieger C, Holmes E, Tracy R, Kooner J, Greenland P, Franco OH, Herrington D, Lindon JC, Elliott P.

Eur Heart J. 2019 May 18. pii: ehz235. doi: 10.1093/eurheartj/ehz235. [Epub ahead of print]


Expanding the RNA Virosphere by Unbiased Metagenomics.

Zhang YZ, Chen YM, Wang W, Qin XC, Holmes EC.

Annu Rev Virol. 2019 May 17. doi: 10.1146/annurev-virology-092818-015851. [Epub ahead of print]


Maximizing research impacts on cancer prevention: An integrated knowledge translation approach used by the Canadian Population Attributable Risk of Cancer (ComPARe) study.

El-Masri Z, De P, Smith LM, Holmes E, Nuttall RK, Brenner DR, Friedenreich CM; ComPARe Study Team.

Prev Med. 2019 May;122:148-154. doi: 10.1016/j.ypmed.2019.03.036.


Entrezpy: A Python library to dynamically interact with the NCBI Entrez databases.

Buchmann JP, Holmes EC.

Bioinformatics. 2019 May 11. pii: btz385. doi: 10.1093/bioinformatics/btz385. [Epub ahead of print]


Post-ejaculatory increase in human semen osmolality in vitro.

Holmes E, Björndahl L, Kvist U.

Andrologia. 2019 May 10:e13311. doi: 10.1111/and.13311. [Epub ahead of print]


Treating repetitive suicidal intrusions using eye movements: study protocol for a multicenter randomized clinical trial.

van Bentum JS, Sijbrandij M, Kerkhof AJFM, Huisman A, Arntz AR, Holmes EA, Franx G, Mokkenstorm J, Huibers MJH.

BMC Psychiatry. 2019 May 9;19(1):143. doi: 10.1186/s12888-019-2129-0.


What really matters? A mixed methods study of treatment preferences and priorities among people with epilepsy in the UK.

Ring A, Jacoby A, Baker G, Holmes E, Hughes D, Kierans C, Marson A.

Epilepsy Behav. 2019 Jun;95:181-191. doi: 10.1016/j.yebeh.2019.03.033. Epub 2019 May 6.


Visuospatial computer game play after memory reminder delivered three days after a traumatic film reduces the number of intrusive memories of the experimental trauma.

Kessler H, Schmidt AC, James EL, Blackwell SE, von Rauchhaupt M, Harren K, Kehyayan A, Clark IA, Sauvage M, Herpertz S, Axmacher N, Holmes EA.

J Behav Ther Exp Psychiatry. 2019 Jan 25. pii: S0005-7916(18)30214-3. doi: 10.1016/j.jbtep.2019.01.006. [Epub ahead of print]


Intrusive memories and voluntary memory of a trauma film: Differential effects of a cognitive interference task after encoding.

Lau-Zhu A, Henson RN, Holmes EA.

J Exp Psychol Gen. 2019 Apr 25. doi: 10.1037/xge0000598. [Epub ahead of print]


Rapid and extensive karyotype diversification in haploid clinical Candida auris isolates.

Bravo Ruiz G, Ross ZK, Holmes E, Schelenz S, Gow NAR, Lorenz A.

Curr Genet. 2019 Apr 24. doi: 10.1007/s00294-019-00976-w. [Epub ahead of print]


A Rare Presentation of Catatonia due to Primary Adrenal Insufficiency.

Puzanov M, Davis H, Holmes EG.

Psychosomatics. 2019 Mar 4. pii: S0033-3182(19)30047-7. doi: 10.1016/j.psym.2019.02.008. [Epub ahead of print] No abstract available.


The discovery of three new hare lagoviruses reveals unexplored viral diversity in this genus.

Mahar JE, Hall RN, Shi M, Mourant R, Huang N, Strive T, Holmes EC.

Virus Evol. 2019 Apr 9;5(1):vez005. doi: 10.1093/ve/vez005. eCollection 2019 Jan.


Effects of Inulin Propionate Ester Incorporated into Palatable Food Products on Appetite and Resting Energy Expenditure: A Randomised Crossover Study.

Byrne CS, Chambers ES, Preston T, Tedford C, Brignardello J, Garcia-Perez I, Holmes E, Wallis GA, Morrison DJ, Frost GS.

Nutrients. 2019 Apr 16;11(4). pii: E861. doi: 10.3390/nu11040861.


Can Sequence Phylogenies Safely Infer the Origin of the Global Virome?

Holmes EC, Duchêne S.

MBio. 2019 Apr 16;10(2). pii: e00289-19. doi: 10.1128/mBio.00289-19. No abstract available.


Enhanced Microbial Bile Acid Deconjugation and Impaired Ileal Uptake in Pregnancy Repress Intestinal Regulation of Bile Acid Synthesis.

Ovadia C, Perdones-Montero A, Spagou K, Smith A, Sarafian MH, Gomez-Romero M, Bellafante E, Clarke LCD, Sadiq F, Nikolova V, Mitchell A, Dixon PH, Santa-Pinter N, Wahlström A, Abu-Hayyeh S, Walters JRF, Marschall HU, Holmes E, Marchesi JR, Williamson C.

Hepatology. 2019 Apr 15. doi: 10.1002/hep.30661. [Epub ahead of print]


Dietary supplementation with inulin-propionate ester or inulin improves insulin sensitivity in adults with overweight and obesity with distinct effects on the gut microbiota, plasma metabolome and systemic inflammatory responses: a randomised cross-over trial.

Chambers ES, Byrne CS, Morrison DJ, Murphy KG, Preston T, Tedford C, Garcia-Perez I, Fountana S, Serrano-Contreras JI, Holmes E, Reynolds CJ, Roberts JF, Boyton RJ, Altmann DM, McDonald JAK, Marchesi JR, Akbar AN, Riddell NE, Wallis GA, Frost GS.

Gut. 2019 Apr 10. pii: gutjnl-2019-318424. doi: 10.1136/gutjnl-2019-318424. [Epub ahead of print]


Meta-transcriptomics reveals a diverse antibiotic resistance gene pool in avian microbiomes.

Marcelino VR, Wille M, Hurt AC, González-Acuña D, Klaassen M, Schlub TE, Eden JS, Shi M, Iredell JR, Sorrell TC, Holmes EC.

BMC Biol. 2019 Apr 8;17(1):31. doi: 10.1186/s12915-019-0649-1.


Subtle scales: An avenue for identification of prescription drug abuse.

Ramachandran S, Rosenthal M, Young J, Holmes E, Bentley JP.

Res Social Adm Pharm. 2019 Feb 22. pii: S1551-7411(18)30289-4. doi: 10.1016/j.sapharm.2019.02.010. [Epub ahead of print]


Obesity and Cage Environment Modulate Metabolism in the Zucker Rat: A Multiple Biological Matrix Approach to Characterizing Metabolic Phenomena.

Lees HJ, Swann JR, Poucher S, Holmes E, Wilson ID, Nicholson JK.

J Proteome Res. 2019 May 3;18(5):2160-2174. doi: 10.1021/acs.jproteome.9b00040. Epub 2019 Apr 18.


Discovery of a highly divergent hepadnavirus in shrews from China.

Nie FY, Tian JH, Lin XD, Yu B, Xing JG, Cao JH, Holmes EC, Ma RZ, Zhang YZ.

Virology. 2019 May;531:162-170. doi: 10.1016/j.virol.2019.03.007. Epub 2019 Mar 11.


Fecal Viral Diversity of Captive and Wild Tasmanian Devils Characterized Using Virion-Enriched Metagenomics and Metatranscriptomics.

Chong R, Shi M, Grueber CE, Holmes EC, Hogg CJ, Belov K, Barrs VR.

J Virol. 2019 May 15;93(11). pii: e00205-19. doi: 10.1128/JVI.00205-19. Print 2019 Jun 1.


Ultrahigh-Performance Liquid Chromatography Tandem Mass Spectrometry with Electrospray Ionization Quantification of Tryptophan Metabolites and Markers of Gut Health in Serum and Plasma-Application to Clinical and Epidemiology Cohorts.

Whiley L, Nye LC, Grant I, Andreas N, Chappell KE, Sarafian MH, Misra R, Plumb RS, Lewis MR, Nicholson JK, Holmes E, Swann JR, Wilson ID.

Anal Chem. 2019 Apr 16;91(8):5207-5216. doi: 10.1021/acs.analchem.8b05884. Epub 2019 Mar 25.


A reptilian endogenous foamy virus sheds light on the early evolution of retroviruses.

Wei X, Chen Y, Duan G, Holmes EC, Cui J.

Virus Evol. 2019 Feb 27;5(1):vez001. doi: 10.1093/ve/vez001. eCollection 2019 Jan.


Identification of A Novel Picorna-Like Virus, Burpengary Virus, that is Negatively Associated with Chlamydial Disease in the Koala.

Harvey E, Madden D, Polkinghorne A, Holmes EC.

Viruses. 2019 Mar 2;11(3). pii: E211. doi: 10.3390/v11030211.


An Inpatient HIV Support Nurse to Promote Engagement in Outpatient HIV Care.

Holmes E, Thompson D, Michell D, Smith JM, Zoltick MI, Gebo KA, Moore RD, Eldred L, Ciaranello A, Berry SA.

J Assoc Nurses AIDS Care. 2019 Mar-Apr;30(2):245-248. doi: 10.1097/JNC.0000000000000017. No abstract available.


Microbial bile salt hydrolases mediate the efficacy of faecal microbiota transplant in the treatment of recurrent Clostridioides difficile infection.

Mullish BH, McDonald JAK, Pechlivanis A, Allegretti JR, Kao D, Barker GF, Kapila D, Petrof EO, Joyce SA, Gahan CGM, Glegola-Madejska I, Williams HRT, Holmes E, Clarke TB, Thursz MR, Marchesi JR.

Gut. 2019 Feb 11. pii: gutjnl-2018-317842. doi: 10.1136/gutjnl-2018-317842. [Epub ahead of print]


Evolutionary stasis of viruses?

Holmes EC, Duchêne S.

Nat Rev Microbiol. 2019 May;17(5):329. doi: 10.1038/s41579-019-0168-7. No abstract available.


Investigation of the impact of total sleep deprivation at home on the number of intrusive memories to an analogue trauma.

Porcheret K, van Heugten-van der Kloet D, Goodwin GM, Foster RG, Wulff K, Holmes EA.

Transl Psychiatry. 2019 Feb 27;9(1):104. doi: 10.1038/s41398-019-0403-z.


Mental imagery as a "motivational amplifier" to promote activities.

Renner F, Murphy FC, Ji JL, Manly T, Holmes EA.

Behav Res Ther. 2019 Mar;114:51-59. doi: 10.1016/j.brat.2019.02.002. Epub 2019 Feb 5.


Suicidal Imagery in Borderline Personality Disorder and Major Depressive Disorder.

Schultebraucks K, Duesenberg M, Simplicio MD, Holmes EA, Roepke S.

J Pers Disord. 2019 Feb 20:1-19. doi: 10.1521/pedi_2019_33_406. [Epub ahead of print]


Correction to: Salivary cortisol response to infant distress in pregnant women with depressive symptoms.

Murphy SE, Braithwaite EC, Hubbard I, Williams KV, Tindall E, Holmes EA, Ramchandani PG.

Arch Womens Ment Health. 2019 Apr;22(2):313. doi: 10.1007/s00737-019-0943-5.


Human Tick-Borne Diseases in Australia.

Dehhaghi M, Kazemi Shariat Panahi H, Holmes EC, Hudson BJ, Schloeffel R, Guillemin GJ.

Front Cell Infect Microbiol. 2019 Jan 28;9:3. doi: 10.3389/fcimb.2019.00003. eCollection 2019. Review.


Autotaxin, bile acid profile and effect of ileal bile acid transporter inhibition in primary biliary cholangitis patients with pruritus.

Hegade VS, Pechlivanis A, McDonald JAK, Rees D, Corrigan M, Hirschfield GM, Taylor-Robinson SD, Holmes E, Marchesi JR, Kendrick S, Jones DE.

Liver Int. 2019 May;39(5):967-975. doi: 10.1111/liv.14069. Epub 2019 Feb 25.


CARer-ADministration of as-needed subcutaneous medication for breakthrough symptoms in homebased dying patients (CARiAD): study protocol for a UK-based open randomised pilot trial.

Poolman M, Roberts J, Byrne A, Perkins P, Hoare Z, Nelson A, Hiscock J, Hughes D, Foster B, O'Connor J, Reymond L, Healy S, Roberts R, Wee B, Lewis P, Johnstone R, Roberts S, Holmes E, Wright S, Hendry A, Wilkinson C.

Trials. 2019 Feb 7;20(1):105. doi: 10.1186/s13063-019-3179-9.


Punctuated Evolution of Myxoma Virus: Rapid and Disjunct Evolution of a Recent Viral Lineage in Australia.

Kerr PJ, Eden JS, Di Giallonardo F, Peacock D, Liu J, Strive T, Read AF, Holmes EC.

J Virol. 2019 Apr 3;93(8). pii: e01994-18. doi: 10.1128/JVI.01994-18. Print 2019 Apr 15.


Shared Common Ancestry of Rodent Alphacoronaviruses Sampled Globally.

Tsoleridis T, Chappell JG, Onianwa O, Marston DA, Fooks AR, Monchatre-Leroy E, Umhang G, Müller MA, Drexler JF, Drosten C, Tarlinton RE, McClure CP, Holmes EC, Ball JK.

Viruses. 2019 Jan 30;11(2). pii: E125. doi: 10.3390/v11020125.


Sleep disturbance and intrusive memories after presenting to the emergency department following a traumatic motor vehicle accident: an exploratory analysis.

Luik AI, Iyadurai L, Gebhardt I, Holmes EA.

Eur J Psychotraumatol. 2019 Jan 14;10(1):1556550. doi: 10.1080/20008198.2018.1556550. eCollection 2019.


Mental imagery in psychiatry: conceptual & clinical implications.

Ji JL, Kavanagh DJ, Holmes EA, MacLeod C, Di Simplicio M.

CNS Spectr. 2019 Feb;24(1):114-126. doi: 10.1017/S1092852918001487. Epub 2019 Jan 28.


Emotional distraction in the context of memory-based orienting of attention.

Raeder SM, Bone JK, Patai EZ, Holmes EA, Nobre AC, Murphy SE.

Emotion. 2019 Jan 24. doi: 10.1037/emo0000506. [Epub ahead of print]


NMR and MS urinary metabolic phenotyping in kidney diseases is fit-for-purpose in the presence of a protease inhibitor.

Boulangé CL, Rood IM, Posma JM, Lindon JC, Holmes E, Wetzels JFM, Deegens JKJ, Kaluarachchi MR.

Mol Omics. 2019 Feb 11;15(1):39-49. doi: 10.1039/c8mo00190a.


Impact of IgG Monitoring and IVIG Supplementation on the Frequency of Febrile Illnesses in Pediatric Acute Lymphoblastic Leukemia Patients Undergoing Maintenance Chemotherapy.

Holmes EA, Friedman DL, Connelly JA, Dulek DE, Zhao Z, Esbenshade AJ.

J Pediatr Hematol Oncol. 2019 Jan 16. doi: 10.1097/MPH.0000000000001415. [Epub ahead of print]


Erratum for Penewit et al., "Efficient and Scalable Precision Genome Editing in Staphylococcus aureus through Conditional Recombineering and CRISPR/Cas9-Mediated Counterselection".

Penewit K, Holmes EA, McLean K, Ren M, Waalkes A, Salipante SJ.

MBio. 2019 Jan 15;10(1). pii: e02698-18. doi: 10.1128/mBio.02698-18. No abstract available.

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