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Items: 1 to 50 of 86

1.

Inducing in Situ Crystallization of Vivianite in a UCT-MBR System for Enhanced Removal and Possible Recovery of Phosphorus from Sewage.

Tian J, Cheng X, Deng S, Liu J, Qiu B, Dang Y, Holmes DE, Waite TD.

Environ Sci Technol. 2019 Jul 9. doi: 10.1021/acs.est.9b01018. [Epub ahead of print]

PMID:
31251600
2.

Metagenomic analysis reveals that activated carbon aids anaerobic digestion of raw incineration leachate by promoting direct interspecies electron transfer.

Lei Y, Sun D, Dang Y, Feng X, Huo D, Liu C, Zheng K, Holmes DE.

Water Res. 2019 Sep 15;161:570-580. doi: 10.1016/j.watres.2019.06.038. Epub 2019 Jun 15.

PMID:
31238222
3.

Iron Corrosion via Direct Metal-Microbe Electron Transfer.

Tang HY, Holmes DE, Ueki T, Palacios PA, Lovley DR.

MBio. 2019 May 14;10(3). pii: e00303-19. doi: 10.1128/mBio.00303-19.

4.

The Archaellum of Methanospirillum hungatei Is Electrically Conductive.

Walker DJF, Martz E, Holmes DE, Zhou Z, Nonnenmann SS, Lovley DR.

MBio. 2019 Apr 16;10(2). pii: e00579-19. doi: 10.1128/mBio.00579-19.

5.

Nitrogen cycling during wastewater treatment.

Holmes DE, Dang Y, Smith JA.

Adv Appl Microbiol. 2019;106:113-192. doi: 10.1016/bs.aambs.2018.10.003. Epub 2018 Dec 10.

PMID:
30798802
6.

Electron and Proton Flux for Carbon Dioxide Reduction in Methanosarcina barkeri During Direct Interspecies Electron Transfer.

Holmes DE, Rotaru AE, Ueki T, Shrestha PM, Ferry JG, Lovley DR.

Front Microbiol. 2018 Dec 13;9:3109. doi: 10.3389/fmicb.2018.03109. eCollection 2018.

7.
8.

Construction of a Geobacter Strain With Exceptional Growth on Cathodes.

Ueki T, Nevin KP, Woodard TL, Aklujkar MA, Holmes DE, Lovley DR.

Front Microbiol. 2018 Jul 13;9:1512. doi: 10.3389/fmicb.2018.01512. eCollection 2018.

9.

Potential for Methanosarcina to Contribute to Uranium Reduction during Acetate-Promoted Groundwater Bioremediation.

Holmes DE, Orelana R, Giloteaux L, Wang LY, Shrestha P, Williams K, Lovley DR, Rotaru AE.

Microb Ecol. 2018 Oct;76(3):660-667. doi: 10.1007/s00248-018-1165-5. Epub 2018 Mar 2.

10.

Electrical current generation in microbial electrolysis cells by hyperthermophilic archaea Ferroglobus placidus and Geoglobus ahangari.

Yilmazel YD, Zhu X, Kim KY, Holmes DE, Logan BE.

Bioelectrochemistry. 2018 Feb;119:142-149. doi: 10.1016/j.bioelechem.2017.09.012. Epub 2017 Oct 2.

PMID:
28992595
11.

Electrically conductive pili from pilin genes of phylogenetically diverse microorganisms.

Walker DJ, Adhikari RY, Holmes DE, Ward JE, Woodard TL, Nevin KP, Lovley DR.

ISME J. 2018 Jan;12(1):48-58. doi: 10.1038/ismej.2017.141. Epub 2017 Sep 5.

12.

Stimulation of the anaerobic digestion of the dry organic fraction of municipal solid waste (OFMSW) with carbon-based conductive materials.

Dang Y, Sun D, Woodard TL, Wang LY, Nevin KP, Holmes DE.

Bioresour Technol. 2017 Aug;238:30-38. doi: 10.1016/j.biortech.2017.04.021. Epub 2017 Apr 9.

PMID:
28433915
13.

The electrically conductive pili of Geobacter species are a recently evolved feature for extracellular electron transfer.

Holmes DE, Dang Y, Walker DJF, Lovley DR.

Microb Genom. 2016 Aug 25;2(8):e000072. doi: 10.1099/mgen.0.000072. eCollection 2016 Aug.

14.

Metatranscriptomic Evidence for Direct Interspecies Electron Transfer between Geobacter and Methanothrix Species in Methanogenic Rice Paddy Soils.

Holmes DE, Shrestha PM, Walker DJF, Dang Y, Nevin KP, Woodard TL, Lovley DR.

Appl Environ Microbiol. 2017 Apr 17;83(9). pii: e00223-17. doi: 10.1128/AEM.00223-17. Print 2017 May 1.

15.

Enhancing biomethanogenic treatment of fresh incineration leachate using single chambered microbial electrolysis cells.

Gao Y, Sun D, Dang Y, Lei Y, Ji J, Lv T, Bian R, Xiao Z, Yan L, Holmes DE.

Bioresour Technol. 2017 May;231:129-137. doi: 10.1016/j.biortech.2017.02.024. Epub 2017 Feb 10. Review.

PMID:
28228327
16.

Arsenic Detoxification by Geobacter Species.

Dang Y, Walker DJF, Vautour KE, Dixon S, Holmes DE.

Appl Environ Microbiol. 2017 Feb 1;83(4). pii: e02689-16. doi: 10.1128/AEM.02689-16. Print 2017 Feb 15.

17.

Biologically Produced Methane as a Renewable Energy Source.

Holmes DE, Smith JA.

Adv Appl Microbiol. 2016;97:1-61. doi: 10.1016/bs.aambs.2016.09.001. Epub 2016 Oct 13. Review.

PMID:
27926429
18.

Stimulation of methanogenesis in anaerobic digesters treating leachate from a municipal solid waste incineration plant with carbon cloth.

Lei Y, Sun D, Dang Y, Chen H, Zhao Z, Zhang Y, Holmes DE.

Bioresour Technol. 2016 Dec;222:270-276. doi: 10.1016/j.biortech.2016.10.007. Epub 2016 Oct 3.

PMID:
27721101
19.

Impact of fulvic acids on bio-methanogenic treatment of municipal solid waste incineration leachate.

Dang Y, Lei Y, Liu Z, Xue Y, Sun D, Wang LY, Holmes DE.

Water Res. 2016 Dec 1;106:71-78. doi: 10.1016/j.watres.2016.09.044. Epub 2016 Sep 23.

PMID:
27697686
20.

Enhancing anaerobic digestion of complex organic waste with carbon-based conductive materials.

Dang Y, Holmes DE, Zhao Z, Woodard TL, Zhang Y, Sun D, Wang LY, Nevin KP, Lovley DR.

Bioresour Technol. 2016 Nov;220:516-522. doi: 10.1016/j.biortech.2016.08.114. Epub 2016 Sep 1.

PMID:
27611035
21.

Come Hither, American Psychoanalysis: Our Complex Multicultural America Needs What We Have to Offer.

Holmes DE.

J Am Psychoanal Assoc. 2016 Jun;64(3):568-86. doi: 10.1177/0003065116654272. No abstract available.

PMID:
27389892
22.

Potential enhancement of direct interspecies electron transfer for syntrophic metabolism of propionate and butyrate with biochar in up-flow anaerobic sludge blanket reactors.

Zhao Z, Zhang Y, Holmes DE, Dang Y, Woodard TL, Nevin KP, Lovley DR.

Bioresour Technol. 2016 Jun;209:148-56. doi: 10.1016/j.biortech.2016.03.005. Epub 2016 Mar 5.

PMID:
26967338
23.

The complete genome sequence and emendation of the hyperthermophilic, obligate iron-reducing archaeon "Geoglobus ahangari" strain 234(T).

Manzella MP, Holmes DE, Rocheleau JM, Chung A, Reguera G, Kashefi K.

Stand Genomic Sci. 2015 Oct 9;10:77. doi: 10.1186/s40793-015-0035-8. eCollection 2015.

24.

Genetic evidence that the degradation of para-cresol by Geobacter metallireducens is catalyzed by the periplasmic para-cresol methylhydroxylase.

Chaurasia AK, Tremblay PL, Holmes DE, Zhang T.

FEMS Microbiol Lett. 2015 Oct;362(20). pii: fnv145. doi: 10.1093/femsle/fnv145. Epub 2015 Aug 26.

PMID:
26316547
25.

Protozoan grazing reduces the current output of microbial fuel cells.

Holmes DE, Nevin KP, Snoeyenbos-West OL, Woodard TL, Strickland JN, Lovley DR.

Bioresour Technol. 2015 Oct;193:8-14. doi: 10.1016/j.biortech.2015.06.056. Epub 2015 Jun 17.

26.

A novel application of radiomimetic compounds as antibiotic drugs.

Andros CC, Dubay RA, Mitchell KD, Chen A, Holmes DE, Kennedy DR.

J Pharm Pharmacol. 2015 Oct;67(10):1371-9. doi: 10.1111/jphp.12432. Epub 2015 Apr 29.

PMID:
25920505
27.

Mechanisms involved in Fe(III) respiration by the hyperthermophilic archaeon Ferroglobus placidus.

Smith JA, Aklujkar M, Risso C, Leang C, Giloteaux L, Holmes DE.

Appl Environ Microbiol. 2015 Apr;81(8):2735-44. doi: 10.1128/AEM.04038-14. Epub 2015 Feb 6.

28.

Bioelectrochemical removal of carbon dioxide (CO2): an innovative method for biogas upgrading.

Xu H, Wang K, Holmes DE.

Bioresour Technol. 2014 Dec;173:392-398. doi: 10.1016/j.biortech.2014.09.127. Epub 2014 Oct 2.

PMID:
25444882
29.

Methane production from protozoan endosymbionts following stimulation of microbial metabolism within subsurface sediments.

Holmes DE, Giloteaux L, Orellana R, Williams KH, Robbins MJ, Lovley DR.

Front Microbiol. 2014 Aug 6;5:366. doi: 10.3389/fmicb.2014.00366. eCollection 2014.

30.

Evidence of Geobacter-associated phage in a uranium-contaminated aquifer.

Holmes DE, Giloteaux L, Chaurasia AK, Williams KH, Luef B, Wilkins MJ, Wrighton KC, Thompson CA, Comolli LR, Lovley DR.

ISME J. 2015 Feb;9(2):333-46. doi: 10.1038/ismej.2014.128. Epub 2014 Aug 1.

31.

Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater.

Holmes DE, Giloteaux L, Williams KH, Wrighton KC, Wilkins MJ, Thompson CA, Roper TJ, Long PE, Lovley DR.

ISME J. 2013 Jul;7(7):1286-98. doi: 10.1038/ismej.2013.20. Epub 2013 Feb 28.

32.

Proteins involved in electron transfer to Fe(III) and Mn(IV) oxides by Geobacter sulfurreducens and Geobacter uraniireducens.

Aklujkar M, Coppi MV, Leang C, Kim BC, Chavan MA, Perpetua LA, Giloteaux L, Liu A, Holmes DE.

Microbiology. 2013 Mar;159(Pt 3):515-35. doi: 10.1099/mic.0.064089-0. Epub 2013 Jan 10.

PMID:
23306674
33.

Molecular analysis of the in situ growth rates of subsurface Geobacter species.

Holmes DE, Giloteaux L, Barlett M, Chavan MA, Smith JA, Williams KH, Wilkins M, Long P, Lovley DR.

Appl Environ Microbiol. 2013 Mar;79(5):1646-53. doi: 10.1128/AEM.03263-12. Epub 2012 Dec 28.

34.

Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation.

Giloteaux L, Holmes DE, Williams KH, Wrighton KC, Wilkins MJ, Montgomery AP, Smith JA, Orellana R, Thompson CA, Roper TJ, Long PE, Lovley DR.

ISME J. 2013 Feb;7(2):370-83. doi: 10.1038/ismej.2012.109. Epub 2012 Oct 4.

35.

Geobacter: the microbe electric's physiology, ecology, and practical applications.

Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru AE, Holmes DE, Franks AE, Orellana R, Risso C, Nevin KP.

Adv Microb Physiol. 2011;59:1-100. doi: 10.1016/B978-0-12-387661-4.00004-5. Review.

PMID:
22114840
36.

Genome-scale analysis of anaerobic benzoate and phenol metabolism in the hyperthermophilic archaeon Ferroglobus placidus.

Holmes DE, Risso C, Smith JA, Lovley DR.

ISME J. 2012 Jan;6(1):146-57. doi: 10.1038/ismej.2011.88. Epub 2011 Jul 21.

37.

Anaerobic oxidation of benzene by the hyperthermophilic archaeon Ferroglobus placidus.

Holmes DE, Risso C, Smith JA, Lovley DR.

Appl Environ Microbiol. 2011 Sep;77(17):5926-33. doi: 10.1128/AEM.05452-11. Epub 2011 Jul 8.

38.

Guidelines for biosafety laboratory competency: CDC and the Association of Public Health Laboratories.

Delany JR, Pentella MA, Rodriguez JA, Shah KV, Baxley KP, Holmes DE; Centers for Disease Control and Prevention.

MMWR Suppl. 2011 Apr 15;60(2):1-23.

PMID:
21490563
39.

Expression of acetate permease-like (apl ) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations.

Elifantz H, N'Guessan LA, Mouser PJ, Williams KH, Wilkins MJ, Risso C, Holmes DE, Long PE, Lovley DR.

FEMS Microbiol Ecol. 2010 Sep;73(3):441-9. doi: 10.1111/j.1574-6941.2010.00907.x. Epub 2010 May 10.

40.
41.

Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation.

Mouser PJ, Holmes DE, Perpetua LA, DiDonato R, Postier B, Liu A, Lovley DR.

ISME J. 2009 Apr;3(4):454-65. doi: 10.1038/ismej.2008.126. Epub 2009 Jan 8.

PMID:
19129865
42.

Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments.

Holmes DE, O'Neil RA, Chavan MA, N'Guessan LA, Vrionis HA, Perpetua LA, Larrahondo MJ, DiDonato R, Liu A, Lovley DR.

ISME J. 2009 Feb;3(2):216-30. doi: 10.1038/ismej.2008.89. Epub 2008 Oct 9.

PMID:
18843300
43.

Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation.

Risso C, Methé BA, Elifantz H, Holmes DE, Lovley DR.

Microbiology. 2008 Sep;154(Pt 9):2589-99. doi: 10.1099/mic.0.2008/017244-0.

PMID:
18757793
44.

The new genetics-challenges and consequences of therapeutic developments.

Holmes DE.

West J Med. 1998;168(Suppl):2-3. No abstract available.

45.

Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes.

Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo MJ, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR.

Microbiology. 2008 May;154(Pt 5):1422-35. doi: 10.1099/mic.0.2007/014365-0.

PMID:
18451051
46.

Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation.

O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo MJ, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'Guessan AL, Lovley DR.

Environ Microbiol. 2008 May;10(5):1218-30. doi: 10.1111/j.1462-2920.2007.01537.x. Epub 2008 Feb 12.

PMID:
18279349
47.

Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.

Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP, Chavan MA, Johnson JP, Long PE, Lovley DR.

ISME J. 2007 Dec;1(8):663-77. Epub 2007 Oct 18.

PMID:
18059491
48.

Prolixibacter bellariivorans gen. nov., sp. nov., a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell.

Holmes DE, Nevin KP, Woodard TL, Peacock AD, Lovley DR.

Int J Syst Evol Microbiol. 2007 Apr;57(Pt 4):701-7.

PMID:
17392190
49.

Reclassification of Trichlorobacter thiogenes as Geobacter thiogenes comb. nov.

Nevin KP, Holmes DE, Woodard TL, Covalla SF, Lovley DR.

Int J Syst Evol Microbiol. 2007 Mar;57(Pt 3):463-6.

PMID:
17329769
50.

Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.

Shelobolina ES, Nevin KP, Blakeney-Hayward JD, Johnsen CV, Plaia TW, Krader P, Woodard T, Holmes DE, Vanpraagh CG, Lovley DR.

Int J Syst Evol Microbiol. 2007 Jan;57(Pt 1):126-35.

PMID:
17220454

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