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Items: 1 to 50 of 81

1.

Electron and Proton Flux for Carbon Dioxide Reduction in Methanosarcina barkeri During Direct Interspecies Electron Transfer.

Holmes DE, Rotaru AE, Ueki T, Shrestha PM, Ferry JG, Lovley DR.

Front Microbiol. 2018 Dec 13;9:3109. doi: 10.3389/fmicb.2018.03109. eCollection 2018.

2.
3.

Construction of a Geobacter Strain With Exceptional Growth on Cathodes.

Ueki T, Nevin KP, Woodard TL, Aklujkar MA, Holmes DE, Lovley DR.

Front Microbiol. 2018 Jul 13;9:1512. doi: 10.3389/fmicb.2018.01512. eCollection 2018.

4.

Potential for Methanosarcina to Contribute to Uranium Reduction during Acetate-Promoted Groundwater Bioremediation.

Holmes DE, Orelana R, Giloteaux L, Wang LY, Shrestha P, Williams K, Lovley DR, Rotaru AE.

Microb Ecol. 2018 Oct;76(3):660-667. doi: 10.1007/s00248-018-1165-5. Epub 2018 Mar 2.

5.

Electrical current generation in microbial electrolysis cells by hyperthermophilic archaea Ferroglobus placidus and Geoglobus ahangari.

Yilmazel YD, Zhu X, Kim KY, Holmes DE, Logan BE.

Bioelectrochemistry. 2018 Feb;119:142-149. doi: 10.1016/j.bioelechem.2017.09.012. Epub 2017 Oct 2.

PMID:
28992595
6.

Electrically conductive pili from pilin genes of phylogenetically diverse microorganisms.

Walker DJ, Adhikari RY, Holmes DE, Ward JE, Woodard TL, Nevin KP, Lovley DR.

ISME J. 2018 Jan;12(1):48-58. doi: 10.1038/ismej.2017.141. Epub 2017 Sep 5.

7.

Stimulation of the anaerobic digestion of the dry organic fraction of municipal solid waste (OFMSW) with carbon-based conductive materials.

Dang Y, Sun D, Woodard TL, Wang LY, Nevin KP, Holmes DE.

Bioresour Technol. 2017 Aug;238:30-38. doi: 10.1016/j.biortech.2017.04.021. Epub 2017 Apr 9.

PMID:
28433915
8.

The electrically conductive pili of Geobacter species are a recently evolved feature for extracellular electron transfer.

Holmes DE, Dang Y, Walker DJ, Lovley DR.

Microb Genom. 2016 Aug 25;2(8):e000072. doi: 10.1099/mgen.0.000072. eCollection 2016 Aug.

9.

Metatranscriptomic Evidence for Direct Interspecies Electron Transfer between Geobacter and Methanothrix Species in Methanogenic Rice Paddy Soils.

Holmes DE, Shrestha PM, Walker DJF, Dang Y, Nevin KP, Woodard TL, Lovley DR.

Appl Environ Microbiol. 2017 Apr 17;83(9). pii: e00223-17. doi: 10.1128/AEM.00223-17. Print 2017 May 1.

10.

Enhancing biomethanogenic treatment of fresh incineration leachate using single chambered microbial electrolysis cells.

Gao Y, Sun D, Dang Y, Lei Y, Ji J, Lv T, Bian R, Xiao Z, Yan L, Holmes DE.

Bioresour Technol. 2017 May;231:129-137. doi: 10.1016/j.biortech.2017.02.024. Epub 2017 Feb 10. Review.

PMID:
28228327
11.

Arsenic Detoxification by Geobacter Species.

Dang Y, Walker DJ, Vautour KE, Dixon S, Holmes DE.

Appl Environ Microbiol. 2017 Feb 1;83(4). pii: e02689-16. doi: 10.1128/AEM.02689-16. Print 2017 Feb 15.

12.

Biologically Produced Methane as a Renewable Energy Source.

Holmes DE, Smith JA.

Adv Appl Microbiol. 2016;97:1-61. doi: 10.1016/bs.aambs.2016.09.001. Epub 2016 Oct 13. Review.

PMID:
27926429
13.

Stimulation of methanogenesis in anaerobic digesters treating leachate from a municipal solid waste incineration plant with carbon cloth.

Lei Y, Sun D, Dang Y, Chen H, Zhao Z, Zhang Y, Holmes DE.

Bioresour Technol. 2016 Dec;222:270-276. doi: 10.1016/j.biortech.2016.10.007. Epub 2016 Oct 3.

PMID:
27721101
14.

Impact of fulvic acids on bio-methanogenic treatment of municipal solid waste incineration leachate.

Dang Y, Lei Y, Liu Z, Xue Y, Sun D, Wang LY, Holmes DE.

Water Res. 2016 Dec 1;106:71-78. doi: 10.1016/j.watres.2016.09.044. Epub 2016 Sep 23.

PMID:
27697686
15.

Enhancing anaerobic digestion of complex organic waste with carbon-based conductive materials.

Dang Y, Holmes DE, Zhao Z, Woodard TL, Zhang Y, Sun D, Wang LY, Nevin KP, Lovley DR.

Bioresour Technol. 2016 Nov;220:516-522. doi: 10.1016/j.biortech.2016.08.114. Epub 2016 Sep 1.

PMID:
27611035
16.

Come Hither, American Psychoanalysis: Our Complex Multicultural America Needs What We Have to Offer.

Holmes DE.

J Am Psychoanal Assoc. 2016 Jun;64(3):568-86. doi: 10.1177/0003065116654272. No abstract available.

PMID:
27389892
17.

Potential enhancement of direct interspecies electron transfer for syntrophic metabolism of propionate and butyrate with biochar in up-flow anaerobic sludge blanket reactors.

Zhao Z, Zhang Y, Holmes DE, Dang Y, Woodard TL, Nevin KP, Lovley DR.

Bioresour Technol. 2016 Jun;209:148-56. doi: 10.1016/j.biortech.2016.03.005. Epub 2016 Mar 5.

PMID:
26967338
18.

The complete genome sequence and emendation of the hyperthermophilic, obligate iron-reducing archaeon "Geoglobus ahangari" strain 234(T).

Manzella MP, Holmes DE, Rocheleau JM, Chung A, Reguera G, Kashefi K.

Stand Genomic Sci. 2015 Oct 9;10:77. doi: 10.1186/s40793-015-0035-8. eCollection 2015.

19.

Genetic evidence that the degradation of para-cresol by Geobacter metallireducens is catalyzed by the periplasmic para-cresol methylhydroxylase.

Chaurasia AK, Tremblay PL, Holmes DE, Zhang T.

FEMS Microbiol Lett. 2015 Oct;362(20). pii: fnv145. doi: 10.1093/femsle/fnv145. Epub 2015 Aug 26.

PMID:
26316547
20.

Protozoan grazing reduces the current output of microbial fuel cells.

Holmes DE, Nevin KP, Snoeyenbos-West OL, Woodard TL, Strickland JN, Lovley DR.

Bioresour Technol. 2015 Oct;193:8-14. doi: 10.1016/j.biortech.2015.06.056. Epub 2015 Jun 17.

21.

A novel application of radiomimetic compounds as antibiotic drugs.

Andros CC, Dubay RA, Mitchell KD, Chen A, Holmes DE, Kennedy DR.

J Pharm Pharmacol. 2015 Oct;67(10):1371-9. doi: 10.1111/jphp.12432. Epub 2015 Apr 29.

PMID:
25920505
22.

Mechanisms involved in Fe(III) respiration by the hyperthermophilic archaeon Ferroglobus placidus.

Smith JA, Aklujkar M, Risso C, Leang C, Giloteaux L, Holmes DE.

Appl Environ Microbiol. 2015 Apr;81(8):2735-44. doi: 10.1128/AEM.04038-14. Epub 2015 Feb 6.

23.

Bioelectrochemical removal of carbon dioxide (CO2): an innovative method for biogas upgrading.

Xu H, Wang K, Holmes DE.

Bioresour Technol. 2014 Dec;173:392-398. doi: 10.1016/j.biortech.2014.09.127. Epub 2014 Oct 2.

PMID:
25444882
24.

Methane production from protozoan endosymbionts following stimulation of microbial metabolism within subsurface sediments.

Holmes DE, Giloteaux L, Orellana R, Williams KH, Robbins MJ, Lovley DR.

Front Microbiol. 2014 Aug 6;5:366. doi: 10.3389/fmicb.2014.00366. eCollection 2014.

25.

Evidence of Geobacter-associated phage in a uranium-contaminated aquifer.

Holmes DE, Giloteaux L, Chaurasia AK, Williams KH, Luef B, Wilkins MJ, Wrighton KC, Thompson CA, Comolli LR, Lovley DR.

ISME J. 2015 Feb;9(2):333-46. doi: 10.1038/ismej.2014.128. Epub 2014 Aug 1.

26.

Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater.

Holmes DE, Giloteaux L, Williams KH, Wrighton KC, Wilkins MJ, Thompson CA, Roper TJ, Long PE, Lovley DR.

ISME J. 2013 Jul;7(7):1286-98. doi: 10.1038/ismej.2013.20. Epub 2013 Feb 28.

27.

Proteins involved in electron transfer to Fe(III) and Mn(IV) oxides by Geobacter sulfurreducens and Geobacter uraniireducens.

Aklujkar M, Coppi MV, Leang C, Kim BC, Chavan MA, Perpetua LA, Giloteaux L, Liu A, Holmes DE.

Microbiology. 2013 Mar;159(Pt 3):515-35. doi: 10.1099/mic.0.064089-0. Epub 2013 Jan 10.

PMID:
23306674
28.

Molecular analysis of the in situ growth rates of subsurface Geobacter species.

Holmes DE, Giloteaux L, Barlett M, Chavan MA, Smith JA, Williams KH, Wilkins M, Long P, Lovley DR.

Appl Environ Microbiol. 2013 Mar;79(5):1646-53. doi: 10.1128/AEM.03263-12. Epub 2012 Dec 28.

29.

Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation.

Giloteaux L, Holmes DE, Williams KH, Wrighton KC, Wilkins MJ, Montgomery AP, Smith JA, Orellana R, Thompson CA, Roper TJ, Long PE, Lovley DR.

ISME J. 2013 Feb;7(2):370-83. doi: 10.1038/ismej.2012.109. Epub 2012 Oct 4.

30.

Geobacter: the microbe electric's physiology, ecology, and practical applications.

Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru AE, Holmes DE, Franks AE, Orellana R, Risso C, Nevin KP.

Adv Microb Physiol. 2011;59:1-100. doi: 10.1016/B978-0-12-387661-4.00004-5. Review.

PMID:
22114840
31.

Genome-scale analysis of anaerobic benzoate and phenol metabolism in the hyperthermophilic archaeon Ferroglobus placidus.

Holmes DE, Risso C, Smith JA, Lovley DR.

ISME J. 2012 Jan;6(1):146-57. doi: 10.1038/ismej.2011.88. Epub 2011 Jul 21.

32.

Anaerobic oxidation of benzene by the hyperthermophilic archaeon Ferroglobus placidus.

Holmes DE, Risso C, Smith JA, Lovley DR.

Appl Environ Microbiol. 2011 Sep;77(17):5926-33. doi: 10.1128/AEM.05452-11. Epub 2011 Jul 8.

33.

Guidelines for biosafety laboratory competency: CDC and the Association of Public Health Laboratories.

Delany JR, Pentella MA, Rodriguez JA, Shah KV, Baxley KP, Holmes DE; Centers for Disease Control and Prevention.

MMWR Suppl. 2011 Apr 15;60(2):1-23.

PMID:
21490563
34.

Expression of acetate permease-like (apl ) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations.

Elifantz H, N'Guessan LA, Mouser PJ, Williams KH, Wilkins MJ, Risso C, Holmes DE, Long PE, Lovley DR.

FEMS Microbiol Ecol. 2010 Sep;73(3):441-9. doi: 10.1111/j.1574-6941.2010.00907.x. Epub 2010 May 10.

35.
36.

Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation.

Mouser PJ, Holmes DE, Perpetua LA, DiDonato R, Postier B, Liu A, Lovley DR.

ISME J. 2009 Apr;3(4):454-65. doi: 10.1038/ismej.2008.126. Epub 2009 Jan 8.

PMID:
19129865
37.

Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments.

Holmes DE, O'Neil RA, Chavan MA, N'Guessan LA, Vrionis HA, Perpetua LA, Larrahondo MJ, DiDonato R, Liu A, Lovley DR.

ISME J. 2009 Feb;3(2):216-30. doi: 10.1038/ismej.2008.89. Epub 2008 Oct 9.

PMID:
18843300
38.

Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation.

Risso C, Methé BA, Elifantz H, Holmes DE, Lovley DR.

Microbiology. 2008 Sep;154(Pt 9):2589-99. doi: 10.1099/mic.0.2008/017244-0.

PMID:
18757793
39.

The new genetics-challenges and consequences of therapeutic developments.

Holmes DE.

West J Med. 1998;168(Suppl):2-3. No abstract available.

40.

Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes.

Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo MJ, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR.

Microbiology. 2008 May;154(Pt 5):1422-35. doi: 10.1099/mic.0.2007/014365-0.

PMID:
18451051
41.

Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation.

O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo MJ, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'Guessan AL, Lovley DR.

Environ Microbiol. 2008 May;10(5):1218-30. doi: 10.1111/j.1462-2920.2007.01537.x. Epub 2008 Feb 12.

PMID:
18279349
42.

Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.

Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP, Chavan MA, Johnson JP, Long PE, Lovley DR.

ISME J. 2007 Dec;1(8):663-77. Epub 2007 Oct 18.

PMID:
18059491
43.

Prolixibacter bellariivorans gen. nov., sp. nov., a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell.

Holmes DE, Nevin KP, Woodard TL, Peacock AD, Lovley DR.

Int J Syst Evol Microbiol. 2007 Apr;57(Pt 4):701-7.

PMID:
17392190
44.

Reclassification of Trichlorobacter thiogenes as Geobacter thiogenes comb. nov.

Nevin KP, Holmes DE, Woodard TL, Covalla SF, Lovley DR.

Int J Syst Evol Microbiol. 2007 Mar;57(Pt 3):463-6.

PMID:
17329769
45.

Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.

Shelobolina ES, Nevin KP, Blakeney-Hayward JD, Johnsen CV, Plaia TW, Krader P, Woodard T, Holmes DE, Vanpraagh CG, Lovley DR.

Int J Syst Evol Microbiol. 2007 Jan;57(Pt 1):126-35.

PMID:
17220454
46.

Microarray and genetic analysis of electron transfer to electrodes in Geobacter sulfurreducens.

Holmes DE, Chaudhuri SK, Nevin KP, Mehta T, Methé BA, Liu A, Ward JE, Woodard TL, Webster J, Lovley DR.

Environ Microbiol. 2006 Oct;8(10):1805-15.

PMID:
16958761
47.

Molecular analysis of a sulphate-reducing consortium used to treat metal-containing effluents.

Boothman C, Hockin S, Holmes DE, Gadd GM, Lloyd JR.

Biometals. 2006 Dec;19(6):601-9. Epub 2006 Aug 31.

PMID:
16946985
48.

c-Type cytochromes in Pelobacter carbinolicus.

Haveman SA, Holmes DE, Ding YH, Ward JE, Didonato RJ Jr, Lovley DR.

Appl Environ Microbiol. 2006 Nov;72(11):6980-5. Epub 2006 Aug 25.

49.

The wrecking effects of race and social class on self and success.

Holmes DE.

Psychoanal Q. 2006 Jan;75(1):215-35.

PMID:
16482966
50.

Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes.

Holmes DE, Nevin KP, O'Neil RA, Ward JE, Adams LA, Woodard TL, Vrionis HA, Lovley DR.

Appl Environ Microbiol. 2005 Nov;71(11):6870-7.

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