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Items: 34

1.

Complete Genome Sequence of Multidrug-Resistant Salmonella enterica Serovar I 4,[5],12:i:- 2015 U.S. Pork Outbreak Isolate USDA15WA-1.

Bearson BL, Trachsel JM, Holman DB, Brunelle BW, Sivasankaran SK, Simmons M, Wasilenko J, Tillman G, Johnston JJ, Bearson SMD.

Microbiol Resour Announc. 2019 Oct 3;8(40). pii: e00791-19. doi: 10.1128/MRA.00791-19.

2.

Evaluation of the Nasopharyngeal Microbiota in Beef Cattle Transported to a Feedlot, With a Focus on Lactic Acid-Producing Bacteria.

Amat S, Holman DB, Timsit E, Schwinghamer T, Alexander TW.

Front Microbiol. 2019 Sep 6;10:1988. doi: 10.3389/fmicb.2019.01988. eCollection 2019.

3.

Shifts in the nasal microbiota of swine in response to different dosing regimens of oxytetracycline administration.

Mou KT, Allen HK, Alt DP, Trachsel J, Hau SJ, Coetzee JF, Holman DB, Kellner S, Loving CL, Brockmeier SL.

Vet Microbiol. 2019 Oct;237:108386. doi: 10.1016/j.vetmic.2019.108386. Epub 2019 Aug 8.

PMID:
31526488
4.

Microbial characterization and fermentative characteristics of crop maize ensiled with unsalable vegetables.

Hooker K, Forwood DL, Caro E, Huo Y, Holman DB, Chaves AV, Meale SJ.

Sci Rep. 2019 Sep 12;9(1):13183. doi: 10.1038/s41598-019-49608-w.

5.

Draft Genome Sequences of 14 Lactobacillus, Enterococcus, and Staphylococcus Isolates from the Nasopharynx of Healthy Feedlot Cattle.

Amat S, Holman DB, Timsit E, Gzyl KE, Alexander TW.

Microbiol Resour Announc. 2019 Aug 22;8(34). pii: e00534-19. doi: 10.1128/MRA.00534-19.

6.

Effects of Hardwood Biochar on Methane Production, Fermentation Characteristics, and the Rumen Microbiota Using Rumen Simulation.

Teoh R, Caro E, Holman DB, Joseph S, Meale SJ, Chaves AV.

Front Microbiol. 2019 Jul 10;10:1534. doi: 10.3389/fmicb.2019.01534. eCollection 2019.

7.
8.

A meta-analysis of the bovine gastrointestinal tract microbiota.

Holman DB, Gzyl KE.

FEMS Microbiol Ecol. 2019 Jun 1;95(6). pii: fiz072. doi: 10.1093/femsec/fiz072.

PMID:
31116403
9.

Lower Respiratory Tract Microbiome and Resistome of Bovine Respiratory Disease Mortalities.

Klima CL, Holman DB, Ralston BJ, Stanford K, Zaheer R, Alexander TW, McAllister TA.

Microb Ecol. 2019 Aug;78(2):446-456. doi: 10.1007/s00248-019-01361-3. Epub 2019 Mar 27.

PMID:
30918994
10.

Chlortetracycline Enhances Tonsil Colonization and Fecal Shedding of Multidrug-Resistant Salmonella enterica Serovar Typhimurium DT104 without Major Alterations to the Porcine Tonsillar and Intestinal Microbiota.

Holman DB, Bearson BL, Allen HK, Shippy DC, Loving CL, Kerr BJ, Bearson SMD, Brunelle BW.

Appl Environ Microbiol. 2019 Feb 6;85(4). pii: e02354-18. doi: 10.1128/AEM.02354-18. Print 2019 Feb 15.

11.

Tucumã Oil Shifted Ruminal Fermentation, Reducing Methane Production and Altering the Microbiome but Decreased Substrate Digestibility Within a RUSITEC Fed a Mixed Hay - Concentrate Diet.

Ramos AFO, Terry SA, Holman DB, Breves G, Pereira LGR, Silva AGM, Chaves AV.

Front Microbiol. 2018 Jul 26;9:1647. doi: 10.3389/fmicb.2018.01647. eCollection 2018.

12.

Humic Substances Alter Ammonia Production and the Microbial Populations Within a RUSITEC Fed a Mixed Hay - Concentrate Diet.

Terry SA, Ramos AFO, Holman DB, McAllister TA, Breves G, Chaves AV.

Front Microbiol. 2018 Jul 2;9:1410. doi: 10.3389/fmicb.2018.01410. eCollection 2018.

13.

Chlortetracycline and florfenicol induce expression of genes associated with pathogenicity in multidrug-resistant Salmonella enterica serovar Typhimurium.

Holman DB, Bearson SMD, Bearson BL, Brunelle BW.

Gut Pathog. 2018 Mar 5;10:10. doi: 10.1186/s13099-018-0236-y. eCollection 2018.

14.

Porcine Response to a Multidrug-Resistant Salmonella enterica serovar I 4,[5],12:i:- Outbreak Isolate.

Shippy DC, Bearson BL, Holman DB, Brunelle BW, Allen HK, Bearson SMD.

Foodborne Pathog Dis. 2018 May;15(5):253-261. doi: 10.1089/fpd.2017.2378. Epub 2018 Feb 7.

PMID:
29412766
15.

Injectable antimicrobials in commercial feedlot cattle and their effect on the nasopharyngeal microbiota and antimicrobial resistance.

Holman DB, Timsit E, Booker CW, Alexander TW.

Vet Microbiol. 2018 Feb;214:140-147. doi: 10.1016/j.vetmic.2017.12.015. Epub 2017 Dec 22.

PMID:
29408026
16.

Genomic and Transcriptomic Analysis of Escherichia coli Strains Associated with Persistent and Transient Bovine Mastitis and the Role of Colanic Acid.

Lippolis JD, Holman DB, Brunelle BW, Thacker TC, Bearson BL, Reinhardt TA, Sacco RE, Casey TA.

Infect Immun. 2017 Dec 19;86(1). pii: e00566-17. doi: 10.1128/IAI.00566-17. Print 2018 Jan.

17.

Metagenomic Sequencing of Bronchoalveolar Lavage Samples from Feedlot Cattle Mortalities Associated with Bovine Respiratory Disease.

Holman DB, Klima CL, Ralston BJ, Niu YD, Stanford K, Alexander TW, McAllister TA.

Genome Announc. 2017 Oct 5;5(40). pii: e01045-17. doi: 10.1128/genomeA.01045-17.

18.

Fecal microbiota of lambs fed purple prairie clover (Dalea purpurea Vent.) and alfalfa (Medicago sativa).

Huang Q, Holman DB, Alexander T, Hu T, Jin L, Xu Z, McAllister TA, Acharya S, Zhao G, Wang Y.

Arch Microbiol. 2018 Jan;200(1):137-145. doi: 10.1007/s00203-017-1427-5. Epub 2017 Sep 1.

PMID:
28864945
19.

Genome Sequences of Escherichia coli Strains That Cause Persistent and Transient Mastitis.

Thacker TC, Lippolis JD, Brunelle BW, Casey TA, Reinhardt TA, Sacco RE, Holman DB.

Genome Announc. 2017 Aug 24;5(34). pii: e00775-17. doi: 10.1128/genomeA.00775-17.

20.

Incubation Temperature, But Not Pequi Oil Supplementation, Affects Methane Production, and the Ruminal Microbiota in a Rumen Simulation Technique (Rusitec) System.

Duarte AC, Holman DB, Alexander TW, Kiri K, Breves G, Chaves AV.

Front Microbiol. 2017 Jun 28;8:1076. doi: 10.3389/fmicb.2017.01076. eCollection 2017.

21.

Meta-analysis To Define a Core Microbiota in the Swine Gut.

Holman DB, Brunelle BW, Trachsel J, Allen HK.

mSystems. 2017 May 23;2(3). pii: e00004-17. doi: 10.1128/mSystems.00004-17. eCollection 2017 May-Jun.

22.

The Type of Forage Substrate Preparation Included as Substrate in a RUSITEC System Affects the Ruminal Microbiota and Fermentation Characteristics.

Duarte AC, Holman DB, Alexander TW, Durmic Z, Vercoe PE, Chaves AV.

Front Microbiol. 2017 Apr 20;8:704. doi: 10.3389/fmicb.2017.00704. eCollection 2017.

23.

Erratum to: The nasopharyngeal microbiota of beef cattle before and after transport to a feedlot.

Holman DB, Timsit E, Amat S, Abbott DW, Buret AG, Alexander TW.

BMC Microbiol. 2017 Apr 20;17(1):95. doi: 10.1186/s12866-017-1007-5. No abstract available.

24.

The nasopharyngeal microbiota of beef cattle before and after transport to a feedlot.

Holman DB, Timsit E, Amat S, Abbott DW, Buret AG, Alexander TW.

BMC Microbiol. 2017 Mar 22;17(1):70. doi: 10.1186/s12866-017-0978-6. Erratum in: BMC Microbiol. 2017 Apr 20;17 (1):95.

25.

Correction: Changes in bacterial community composition of Escherichia coli O157:H7 super-shedder cattle occur in the lower intestine.

Zaheer R, Dugat-Bony E, Holman DB, Cousteix E, Xu Y, Munns K, Selinger LJ, Barbieri R, Alexander T, McAllister TA, Selinger LB.

PLoS One. 2017 Feb 13;12(2):e0172387. doi: 10.1371/journal.pone.0172387. eCollection 2017.

26.

Changes in bacterial community composition of Escherichia coli O157:H7 super-shedder cattle occur in the lower intestine.

Zaheer R, Dugat-Bony E, Holman DB, Cousteix E, Xu Y, Munns K, Selinger LJ, Barbieri R, Alexander T, McAllister TA, Selinger LB.

PLoS One. 2017 Jan 31;12(1):e0170050. doi: 10.1371/journal.pone.0170050. eCollection 2017. Erratum in: PLoS One. 2017 Feb 13;12 (2):e0172387.

27.

Effect of Co-Composting Cattle Manure with Construction and Demolition Waste on the Archaeal, Bacterial, and Fungal Microbiota, and on Antimicrobial Resistance Determinants.

Holman DB, Hao X, Topp E, Yang HE, Alexander TW.

PLoS One. 2016 Jun 14;11(6):e0157539. doi: 10.1371/journal.pone.0157539. eCollection 2016.

28.

Evolution of the nasopharyngeal microbiota of beef cattle from weaning to 40 days after arrival at a feedlot.

Timsit E, Workentine M, Schryvers AB, Holman DB, van der Meer F, Alexander TW.

Vet Microbiol. 2016 May 1;187:75-81. doi: 10.1016/j.vetmic.2016.03.020. Epub 2016 Mar 26.

PMID:
27066712
29.

The nasopharyngeal microbiota of feedlot cattle.

Holman DB, Timsit E, Alexander TW.

Sci Rep. 2015 Oct 26;5:15557. doi: 10.1038/srep15557.

30.

Antimicrobial use in swine production and its effect on the swine gut microbiota and antimicrobial resistance.

Holman DB, Chénier MR.

Can J Microbiol. 2015 Nov;61(11):785-98. doi: 10.1139/cjm-2015-0239. Epub 2015 Aug 20. Review.

PMID:
26414105
31.

The nasopharyngeal microbiota of feedlot cattle that develop bovine respiratory disease.

Holman DB, McAllister TA, Topp E, Wright AD, Alexander TW.

Vet Microbiol. 2015 Oct 22;180(1-2):90-5. doi: 10.1016/j.vetmic.2015.07.031. Epub 2015 Jul 28.

PMID:
26249828
32.

Temporal analysis of the effect of extruded flaxseed on the swine gut microbiota.

Holman DB, Baurhoo B, Chénier MR.

Can J Microbiol. 2014 Oct;60(10):649-59. doi: 10.1139/cjm-2014-0317. Epub 2014 Sep 3.

PMID:
25264709
33.

Temporal changes and the effect of subtherapeutic concentrations of antibiotics in the gut microbiota of swine.

Holman DB, Chénier MR.

FEMS Microbiol Ecol. 2014 Dec;90(3):599-608. doi: 10.1111/1574-6941.12419. Epub 2014 Oct 2.

34.

Impact of subtherapeutic administration of tylosin and chlortetracycline on antimicrobial resistance in farrow-to-finish swine.

Holman DB, Chénier MR.

FEMS Microbiol Ecol. 2013 Jul;85(1):1-13. doi: 10.1111/1574-6941.12093. Epub 2013 Mar 11.

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