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Items: 17

1.

CyTOFmerge: Integrating mass cytometry data across multiple panels.

Abdelaal T, Höllt T, van Unen V, Lelieveldt BPF, Koning F, Reinders MJT, Mahfouz A.

Bioinformatics. 2019 Mar 15. pii: btz180. doi: 10.1093/bioinformatics/btz180. [Epub ahead of print]

PMID:
30874801
2.

Predicting cell populations in single cell mass cytometry data.

Abdelaal T, van Unen V, Höllt T, Koning F, Reinders MJT, Mahfouz A.

Cytometry A. 2019 Mar 12. doi: 10.1002/cyto.a.23738. [Epub ahead of print]

PMID:
30861637
3.

Memory CD4+ T cells are generated in the human fetal intestine.

Li N, van Unen V, Abdelaal T, Guo N, Kasatskaya SA, Ladell K, McLaren JE, Egorov ES, Izraelson M, Chuva de Sousa Lopes SM, Höllt T, Britanova OV, Eggermont J, de Miranda NFCC, Chudakov DM, Price DA, Lelieveldt BPF, Koning F.

Nat Immunol. 2019 Mar;20(3):301-312. doi: 10.1038/s41590-018-0294-9. Epub 2019 Jan 21.

PMID:
30664737
4.

Cytofast: A workflow for visual and quantitative analysis of flow and mass cytometry data to discover immune signatures and correlations.

Beyrend G, Stam K, Höllt T, Ossendorp F, Arens R.

Comput Struct Biotechnol J. 2018 Oct 24;16:435-442. doi: 10.1016/j.csbj.2018.10.004. eCollection 2018.

5.

The Anatomical Location Shapes the Immune Infiltrate in Tumors of Same Etiology and Affects Survival.

Santegoets SJ, van Ham VJ, Ehsan I, Charoentong P, Duurland CL, van Unen V, Höllt T, van der Velden LA, van Egmond SL, Kortekaas KE, de Vos van Steenwijk PJ, van Poelgeest MIE, Welters MJP, van der Burg SH.

Clin Cancer Res. 2019 Jan 1;25(1):240-252. doi: 10.1158/1078-0432.CCR-18-1749. Epub 2018 Sep 17.

PMID:
30224343
6.

Heterogeneity of circulating CD8 T-cells specific to islet, neo-antigen and virus in patients with type 1 diabetes mellitus.

Laban S, Suwandi JS, van Unen V, Pool J, Wesselius J, Höllt T, Pezzotti N, Vilanova A, Lelieveldt BPF, Roep BO.

PLoS One. 2018 Aug 8;13(8):e0200818. doi: 10.1371/journal.pone.0200818. eCollection 2018.

7.

Mass cytometry reveals innate lymphoid cell differentiation pathways in the human fetal intestine.

Li N, van Unen V, Höllt T, Thompson A, van Bergen J, Pezzotti N, Eisemann E, Vilanova A, Chuva de Sousa Lopes SM, Lelieveldt BPF, Koning F.

J Exp Med. 2018 May 7;215(5):1383-1396. doi: 10.1084/jem.20171934. Epub 2018 Mar 6.

8.

The Contribution of Cytomegalovirus Infection to Immune Senescence Is Set by the Infectious Dose.

Redeker A, Remmerswaal EBM, van der Gracht ETI, Welten SPM, Höllt T, Koning F, Cicin-Sain L, Nikolich-Žugich J, Ten Berge IJM, van Lier RAW, van Unen V, Arens R.

Front Immunol. 2018 Jan 10;8:1953. doi: 10.3389/fimmu.2017.01953. eCollection 2017.

9.

Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types.

van Unen V, Höllt T, Pezzotti N, Li N, Reinders MJT, Eisemann E, Koning F, Vilanova A, Lelieveldt BPF.

Nat Commun. 2017 Nov 23;8(1):1740. doi: 10.1038/s41467-017-01689-9.

10.

DeepEyes: Progressive Visual Analytics for Designing Deep Neural Networks.

Pezzotti N, Hollt T, Van Gemert J, Lelieveldt BPF, Eisemann E, Vilanova A.

IEEE Trans Vis Comput Graph. 2018 Jan;24(1):98-108. doi: 10.1109/TVCG.2017.2744358. Epub 2017 Aug 29.

PMID:
28866543
11.

CyteGuide: Visual Guidance for Hierarchical Single-Cell Analysis.

Hollt T, Pezzotti N, van Unen V, Koning F, Lelieveldt BPF, Vilanova A.

IEEE Trans Vis Comput Graph. 2018 Jan;24(1):739-748. doi: 10.1109/TVCG.2017.2744318. Epub 2017 Aug 29.

PMID:
28866537
12.

BrainScope: interactive visual exploration of the spatial and temporal human brain transcriptome.

Huisman SMH, van Lew B, Mahfouz A, Pezzotti N, Höllt T, Michielsen L, Vilanova A, Reinders MJT, Lelieveldt BPF.

Nucleic Acids Res. 2017 Jun 2;45(10):e83. doi: 10.1093/nar/gkx046.

13.

Approximated and User Steerable tSNE for Progressive Visual Analytics.

Pezzotti N, Lelieveldt BPF, Van Der Maaten L, Hollt T, Eisemann E, Vilanova A.

IEEE Trans Vis Comput Graph. 2017 Jul;23(7):1739-1752. doi: 10.1109/TVCG.2016.2570755. Epub 2016 May 19.

PMID:
28113434
14.

Mass Cytometry of the Human Mucosal Immune System Identifies Tissue- and Disease-Associated Immune Subsets.

van Unen V, Li N, Molendijk I, Temurhan M, Höllt T, van der Meulen-de Jong AE, Verspaget HW, Mearin ML, Mulder CJ, van Bergen J, Lelieveldt BP, Koning F.

Immunity. 2016 May 17;44(5):1227-39. doi: 10.1016/j.immuni.2016.04.014. Epub 2016 May 10.

15.

Ovis: A Framework for Visual Analysis of Ocean Forecast Ensembles.

Höllt T, Magdy A, Zhan P, Chen G, Gopalakrishnan G, Hoteit I, Hansen CD, Hadwiger M.

IEEE Trans Vis Comput Graph. 2014 Aug;20(8):1114-26. doi: 10.1109/TVCG.2014.2307892.

PMID:
26357365
16.

SeiVis: An Interactive Visual Subsurface Modeling Application.

Hollt T, Freiler W, Gschwantner F, Doleisch H, Heinemann G, Hadwiger M.

IEEE Trans Vis Comput Graph. 2012 Dec;18(12):2226-35. doi: 10.1109/TVCG.2012.259.

PMID:
26357130
17.

Interactive volume exploration for feature detection and quantification in industrial CT data.

Hadwiger M, Laura F, Rezk-Salama C, Höllt T, Geier G, Pabel T.

IEEE Trans Vis Comput Graph. 2008 Nov-Dec;14(6):1507-14. doi: 10.1109/TVCG.2008.147.

PMID:
18989003

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