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Items: 46

1.

Microbiota stratification identifies disease-specific alterations in neuro-Behçet's disease and multiple sclerosis.

Oezguen N, Yalcinkaya N, Kücükali CI, Dahdouli M, Hollister EB, Luna RA, Türkoglu R, Kürtüncü M, Eraksoy M, Savidge TC, Tüzün E.

Clin Exp Rheumatol. 2019 May 30. [Epub ahead of print]

PMID:
31172918
2.

Leveraging Human Microbiome Features to Diagnose and Stratify Children with Irritable Bowel Syndrome.

Hollister EB, Oezguen N, Chumpitazi BP, Luna RA, Weidler EM, Rubio-Gonzales M, Dahdouli M, Cope JL, Mistretta TA, Raza S, Metcalf GA, Muzny DM, Gibbs RA, Petrosino JF, Heitkemper M, Savidge TC, Shulman RJ, Versalovic J.

J Mol Diagn. 2019 May;21(3):449-461. doi: 10.1016/j.jmoldx.2019.01.006. Epub 2019 Apr 17.

3.

Fungal Community Structural and Microbial Functional Pattern Changes After Soil Amendments by Oilseed Meals of Jatropha curcas and Camelina sativa: A Microcosm Study.

Hu P, Wu L, Hollister EB, Wang AS, Somenahally AC, Hons FM, Gentry TJ.

Front Microbiol. 2019 Mar 29;10:537. doi: 10.3389/fmicb.2019.00537. eCollection 2019.

4.

Promoting Cardiovascular Health in Early Childhood and Transitions in Childhood through Adolescence: A Workshop Report.

Daniels SR, Pratt CA, Hollister EB, Labarthe D, Cohen DA, Walker JR, Beech BM, Balagopal PB, Beebe DW, Gillman MW, Goodrich JM, Jaquish C, Kit B, Miller AL, Olds D, Oken E, Rajakumar K, Sherwood NE, Spruijt-Metz D, Steinberger J, Suglia SF, Teitelbaum SL, Urbina EM, Van Horn L, Ward D, Young ME.

J Pediatr. 2019 Jun;209:240-251.e1. doi: 10.1016/j.jpeds.2019.01.042. Epub 2019 Mar 20. No abstract available.

PMID:
30904171
5.

Biochemical but not compositional recovery of skin mucosal microbiome communities after disruption.

Brumlow CE, Luna RA, Hollister EB, Gomez JA, Burcham LA, Cowdrey MB, Primm TP.

Infect Drug Resist. 2019 Feb 13;12:399-416. doi: 10.2147/IDR.S185992. eCollection 2019.

6.

Considering the Supraorganism: Harnessing the Gut Microbiome for Cancer Prevention, Detection, and Treatment.

Hollister EB.

Am J Gastroenterol. 2019 Feb 28. doi: 10.14309/ajg.0000000000000180. [Epub ahead of print]

PMID:
30829680
7.

Re-purposing 16S rRNA gene sequence data from within case paired tumor biopsy and tumor-adjacent biopsy or fecal samples to identify microbial markers for colorectal cancer.

Shah MS, DeSantis T, Yamal JM, Weir T, Ryan EP, Cope JL, Hollister EB.

PLoS One. 2018 Nov 9;13(11):e0207002. doi: 10.1371/journal.pone.0207002. eCollection 2018.

8.

Airway Microbiome and Development of Bronchopulmonary Dysplasia in Preterm Infants: A Systematic Review.

Pammi M, Lal CV, Wagner BD, Mourani PM, Lohmann P, Luna RA, Sisson A, Shivanna B, Hollister EB, Abman SH, Versalovic J, Connett GJ, Bhandari V, Ambalavanan N.

J Pediatr. 2019 Jan;204:126-133.e2. doi: 10.1016/j.jpeds.2018.08.042. Epub 2018 Oct 5.

PMID:
30297287
9.

Relationships of Microbiome Markers With Extraintestinal, Psychological Distress and Gastrointestinal Symptoms, and Quality of Life in Women With Irritable Bowel Syndrome.

Hollister EB, Cain KC, Shulman RJ, Jarrett ME, Burr RL, Ko C, Zia J, Han CJ, Heitkemper MM.

J Clin Gastroenterol. 2018 Aug 24. doi: 10.1097/MCG.0000000000001107. [Epub ahead of print]

PMID:
30148765
10.

Stool and urine trefoil factor 3 levels: associations with symptoms, intestinal permeability, and microbial diversity in irritable bowel syndrome.

Heitkemper MM, Cain KC, Shulman RJ, Burr RL, Ko C, Hollister EB, Callen N, Zia J, Han CJ, Jarrett ME.

Benef Microbes. 2018 Apr 25;9(3):345-355. doi: 10.3920/BM2017.0059. Epub 2018 Apr 10.

11.

Characterization of the Stool Microbiome in Hispanic Preschool Children by Weight Status and Time.

Hollister EB, Foster BA, Dahdouli M, Ramirez J, Lai Z.

Child Obes. 2018 Feb/Mar;14(2):122-130. doi: 10.1089/chi.2017.0122. Epub 2017 Oct 13.

12.

Microbial markers in the diagnosis of colorectal cancer: the promise, reality and challenge.

DeSantis TZ, Shah MS, Cope JL, Hollister EB.

Future Microbiol. 2017 Nov;12:1341-1344. doi: 10.2217/fmb-2017-0185. Epub 2017 Oct 3. No abstract available.

13.

Differences in gut microbial composition correlate with regional brain volumes in irritable bowel syndrome.

Labus JS, Hollister EB, Jacobs J, Kirbach K, Oezguen N, Gupta A, Acosta J, Luna RA, Aagaard K, Versalovic J, Savidge T, Hsiao E, Tillisch K, Mayer EA.

Microbiome. 2017 May 1;5(1):49. doi: 10.1186/s40168-017-0260-z.

14.

Leveraging sequence-based faecal microbial community survey data to identify a composite biomarker for colorectal cancer.

Shah MS, DeSantis TZ, Weinmaier T, McMurdie PJ, Cope JL, Altrichter A, Yamal JM, Hollister EB.

Gut. 2018 May;67(5):882-891. doi: 10.1136/gutjnl-2016-313189. Epub 2017 Mar 24.

PMID:
28341746
15.

Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis.

Pammi M, Cope J, Tarr PI, Warner BB, Morrow AL, Mai V, Gregory KE, Kroll JS, McMurtry V, Ferris MJ, Engstrand L, Lilja HE, Hollister EB, Versalovic J, Neu J.

Microbiome. 2017 Mar 9;5(1):31. doi: 10.1186/s40168-017-0248-8. Review.

16.

Reply.

Shulman RJ, Hollister EB, Cain K, Heitkemper M.

Clin Gastroenterol Hepatol. 2016 Nov;14(11):1667-1668. doi: 10.1016/j.cgh.2016.06.021. Epub 2016 Jul 1. No abstract available.

PMID:
27377875
17.

The mucosal microbiota in a young child with severe non-Helicobacter gastritis.

Preidis GA, Luna RA, Hollister EB, Schady D, Gao C, Finegold MJ, Versalovic J, Shulman RJ.

Therap Adv Gastroenterol. 2016 Sep;9(5):749-51. doi: 10.1177/1756283X16653582. Epub 2016 Jun 14. No abstract available.

18.

GABA-producing Bifidobacterium dentium modulates visceral sensitivity in the intestine.

Pokusaeva K, Johnson C, Luk B, Uribe G, Fu Y, Oezguen N, Matsunami RK, Lugo M, Major A, Mori-Akiyama Y, Hollister EB, Dann SM, Shi XZ, Engler DA, Savidge T, Versalovic J.

Neurogastroenterol Motil. 2017 Jan;29(1). doi: 10.1111/nmo.12904. Epub 2016 Jul 25.

19.

Composition and function of the pediatric colonic mucosal microbiome in untreated patients with ulcerative colitis.

Shah R, Cope JL, Nagy-Szakal D, Dowd S, Versalovic J, Hollister EB, Kellermayer R.

Gut Microbes. 2016 Sep 2;7(5):384-96. doi: 10.1080/19490976.2016.1190073. Epub 2016 May 23.

20.

Psyllium Fiber Reduces Abdominal Pain in Children With Irritable Bowel Syndrome in a Randomized, Double-Blind Trial.

Shulman RJ, Hollister EB, Cain K, Czyzewski DI, Self MM, Weidler EM, Devaraj S, Luna RA, Versalovic J, Heitkemper M.

Clin Gastroenterol Hepatol. 2017 May;15(5):712-719.e4. doi: 10.1016/j.cgh.2016.03.045. Epub 2016 Apr 11.

21.

Transfer of Viral Communities between Human Individuals during Fecal Microbiota Transplantation.

Chehoud C, Dryga A, Hwang Y, Nagy-Szakal D, Hollister EB, Luna RA, Versalovic J, Kellermayer R, Bushman FD.

MBio. 2016 Mar 29;7(2):e00322. doi: 10.1128/mBio.00322-16.

22.

Colonic Mucosal Epigenome and Microbiome Development in Children and Adolescents.

Harris RA, Shah R, Hollister EB, Tronstad RR, Hovdenak N, Szigeti R, Versalovic J, Kellermayer R.

J Immunol Res. 2016;2016:9170162. doi: 10.1155/2016/9170162. Epub 2016 Feb 23.

23.

The Microbiome, Intestinal Function, and Arginine Metabolism of Healthy Indian Women Are Different from Those of American and Jamaican Women.

Kao CC, Cope JL, Hsu JW, Dwarkanath P, Karnes JM, Luna RA, Hollister EB, Thame MM, Kurpad AV, Jahoor F.

J Nutr. 2016 Mar 9. pii: jn227579. [Epub ahead of print]

PMID:
26962180
24.

Role of the Gut Microbiome in Obstructive Sleep Apnea-Induced Hypertension.

Durgan DJ, Ganesh BP, Cope JL, Ajami NJ, Phillips SC, Petrosino JF, Hollister EB, Bryan RM Jr.

Hypertension. 2016 Feb;67(2):469-74. doi: 10.1161/HYPERTENSIONAHA.115.06672. Epub 2015 Dec 28.

25.

Structure and function of the healthy pre-adolescent pediatric gut microbiome.

Hollister EB, Riehle K, Luna RA, Weidler EM, Rubio-Gonzales M, Mistretta TA, Raza S, Doddapaneni HV, Metcalf GA, Muzny DM, Gibbs RA, Petrosino JF, Shulman RJ, Versalovic J.

Microbiome. 2015 Aug 26;3:36. doi: 10.1186/s40168-015-0101-x.

26.

Randomised clinical trial: gut microbiome biomarkers are associated with clinical response to a low FODMAP diet in children with the irritable bowel syndrome.

Chumpitazi BP, Cope JL, Hollister EB, Tsai CM, McMeans AR, Luna RA, Versalovic J, Shulman RJ.

Aliment Pharmacol Ther. 2015 Aug;42(4):418-27. doi: 10.1111/apt.13286. Epub 2015 Jun 24.

27.

The Fecal Microbiome in Pediatric Patients With Short Bowel Syndrome.

Davidovics ZH, Carter BA, Luna RA, Hollister EB, Shulman RJ, Versalovic J.

JPEN J Parenter Enteral Nutr. 2016 Nov;40(8):1106-1113. Epub 2015 Jun 9.

28.

Serial fecal microbiota transplantation alters mucosal gene expression in pediatric ulcerative colitis.

Kellermayer R, Nagy-Szakal D, Harris RA, Luna RA, Pitashny M, Schady D, Mir SA, Lopez ME, Gilger MA, Belmont J, Hollister EB, Versalovic J.

Am J Gastroenterol. 2015 Apr;110(4):604-6. doi: 10.1038/ajg.2015.19. No abstract available.

29.

Soil bacterial and fungal communities respond differently to various isothiocyanates added for biofumigation.

Hu P, Hollister EB, Somenahally AC, Hons FM, Gentry TJ.

Front Microbiol. 2015 Jan 7;5:729. doi: 10.3389/fmicb.2014.00729. eCollection 2014.

30.

From prediction to function using evolutionary genomics: human-specific ecotypes of Lactobacillus reuteri have diverse probiotic functions.

Spinler JK, Sontakke A, Hollister EB, Venable SF, Oh PL, Balderas MA, Saulnier DM, Mistretta TA, Devaraj S, Walter J, Versalovic J, Highlander SK.

Genome Biol Evol. 2014 Jun 19;6(7):1772-89. doi: 10.1093/gbe/evu137.

31.

The airway microbiome of intubated premature infants: characteristics and changes that predict the development of bronchopulmonary dysplasia.

Lohmann P, Luna RA, Hollister EB, Devaraj S, Mistretta TA, Welty SE, Versalovic J.

Pediatr Res. 2014 Sep;76(3):294-301. doi: 10.1038/pr.2014.85. Epub 2014 Jun 18.

PMID:
24941215
32.

Gut microbiota influences low fermentable substrate diet efficacy in children with irritable bowel syndrome.

Chumpitazi BP, Hollister EB, Oezguen N, Tsai CM, McMeans AR, Luna RA, Savidge TC, Versalovic J, Shulman RJ.

Gut Microbes. 2014 Mar-Apr;5(2):165-75. doi: 10.4161/gmic.27923. Epub 2014 Jan 27.

33.

Evaluating the performance of carboxylate platform fermentations across diverse inocula originating as sediments from extreme environments.

Cope JL, Hammett AJ, Kolomiets EA, Forrest AK, Golub KW, Hollister EB, DeWitt TJ, Gentry TJ, Holtzapple MT, Wilkinson HH.

Bioresour Technol. 2014 Mar;155:388-94. doi: 10.1016/j.biortech.2013.12.105. Epub 2014 Jan 4.

PMID:
24502857
34.

Compositional and functional features of the gastrointestinal microbiome and their effects on human health.

Hollister EB, Gao C, Versalovic J.

Gastroenterology. 2014 May;146(6):1449-58. doi: 10.1053/j.gastro.2014.01.052. Epub 2014 Jan 29. Review.

35.

Cellulose supplementation early in life ameliorates colitis in adult mice.

Nagy-Szakal D, Hollister EB, Luna RA, Szigeti R, Tatevian N, Smith CW, Versalovic J, Kellermayer R.

PLoS One. 2013;8(2):e56685. doi: 10.1371/journal.pone.0056685. Epub 2013 Feb 20.

36.

Differential impacts of brassicaceous and nonbrassicaceous oilseed meals on soil bacterial and fungal communities.

Hollister EB, Hu P, Wang AS, Hons FM, Gentry TJ.

FEMS Microbiol Ecol. 2013 Mar;83(3):632-41. doi: 10.1111/1574-6941.12020. Epub 2012 Nov 6.

37.

Mesophilic and thermophilic conditions select for unique but highly parallel microbial communities to perform carboxylate platform biomass conversion.

Hollister EB, Forrest AK, Wilkinson HH, Ebbole DJ, Tringe SG, Malfatti SA, Holtzapple MT, Gentry TJ.

PLoS One. 2012;7(6):e39689. doi: 10.1371/journal.pone.0039689. Epub 2012 Jun 22.

38.

Comparison of mixed-acid fermentations inoculated with six different mixed cultures.

Forrest AK, Hollister EB, Gentry TJ, Wilkinson HH, Holtzapple MT.

Bioresour Technol. 2012 Aug;118:343-9. doi: 10.1016/j.biortech.2012.05.043. Epub 2012 May 18.

PMID:
22705541
39.

Water management impacts on arsenic speciation and iron-reducing bacteria in contrasting rice-rhizosphere compartments.

Somenahally AC, Hollister EB, Yan W, Gentry TJ, Loeppert RH.

Environ Sci Technol. 2011 Oct 1;45(19):8328-35. doi: 10.1021/es2012403. Epub 2011 Sep 9.

PMID:
21870848
40.

Investigation of intermittent air exposure on four-stage and one-stage anaerobic semi-continuous mixed-acid fermentations.

Golub KW, Smith AD, Hollister EB, Gentry TJ, Holtzapple MT.

Bioresour Technol. 2011 Apr;102(8):5066-75. doi: 10.1016/j.biortech.2011.02.011. Epub 2011 Feb 24.

PMID:
21353536
41.

Black Box Chimera Check (B2C2): a Windows-Based Software for Batch Depletion of Chimeras from Bacterial 16S rRNA Gene Datasets.

Gontcharova V, Youn E, Wolcott RD, Hollister EB, Gentry TJ, Dowd SE.

Open Microbiol J. 2010 Aug 11;4:47-52. doi: 10.2174/1874285801004010047.

42.

Microbial community composition and dynamics in a semi-industrial-scale facility operating under the MixAlco™ bioconversion platform.

Hollister EB, Hammett AM, Holtzapple MT, Gentry TJ, Wilkinson HH.

J Appl Microbiol. 2011 Feb;110(2):587-96. doi: 10.1111/j.1365-2672.2010.04919.x. Epub 2011 Jan 4.

43.

Structure and dynamics of the microbial communities underlying the carboxylate platform for biofuel production.

Hollister EB, Forrest AK, Wilkinson HH, Ebbole DJ, Malfatti SA, Tringe SG, Holtzapple MT, Gentry TJ.

Appl Microbiol Biotechnol. 2010 Sep;88(1):389-99. doi: 10.1007/s00253-010-2789-7. Epub 2010 Jul 31.

PMID:
20676626
44.

Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments.

Hollister EB, Engledow AS, Hammett AJ, Provin TL, Wilkinson HH, Gentry TJ.

ISME J. 2010 Jun;4(6):829-38. doi: 10.1038/ismej.2010.3. Epub 2010 Feb 4.

PMID:
20130657
45.

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.

Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF.

Appl Environ Microbiol. 2009 Dec;75(23):7537-41. doi: 10.1128/AEM.01541-09. Epub 2009 Oct 2.

46.

Effects of repeated glyphosate applications on soil microbial community composition and the mineralization of glyphosate.

Lancaster SH, Hollister EB, Senseman SA, Gentry TJ.

Pest Manag Sci. 2010 Jan;66(1):59-64. doi: 10.1002/ps.1831.

PMID:
19697445

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