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Items: 1 to 50 of 101

1.

A modeling approach integrating microbial activity, mass transfer, and geochemical processes to interpret biological assays: An example for PCE degradation in a multi-phase batch setup.

Murray AM, Maillard J, Jin B, Broholm MM, Holliger C, Rolle M.

Water Res. 2019 Sep 1;160:484-496. doi: 10.1016/j.watres.2019.05.087. Epub 2019 May 27.

PMID:
31177078
2.

Strain-level diversity drives alternative community types in millimetre-scale granular biofilms.

Leventhal GE, Boix C, Kuechler U, Enke TN, Sliwerska E, Holliger C, Cordero OX.

Nat Microbiol. 2018 Nov;3(11):1295-1303. doi: 10.1038/s41564-018-0242-3. Epub 2018 Sep 24.

PMID:
30250246
3.

Editorial: Special issue on anaerobic biological dehalogenation.

Holliger C, Nijenhuis I.

FEMS Microbiol Ecol. 2018 Jun 1;94(6). doi: 10.1093/femsec/fiy054. No abstract available.

PMID:
29590392
4.

Coexistence of two distinct Sulfurospirillum populations respiring tetrachloroethene-genomic and kinetic considerations.

Buttet GF, Murray AM, Goris T, Burion M, Jin B, Rolle M, Holliger C, Maillard J.

FEMS Microbiol Ecol. 2018 May 1;94(5). doi: 10.1093/femsec/fiy018.

PMID:
29518190
5.

The Swiss Society of Microbiology: Small Bugs, Big Questions and Cool Answers.

Greub G, Holliger C, Sanglard D, Schrenzel J, Thiel V, Viollier P.

Chimia (Aarau). 2016 Dec 21;70(12):874-877. doi: 10.2533/chimia.2016.874.

6.

Modeling hydraulic transport and anaerobic uptake by PAOs and GAOs during wastewater feeding in EBPR granular sludge reactors.

Weissbrodt DG, Holliger C, Morgenroth E.

Biotechnol Bioeng. 2017 Aug;114(8):1688-1702. doi: 10.1002/bit.26295. Epub 2017 May 18.

PMID:
28322436
7.

Towards a standardization of biomethane potential tests.

Holliger C, Alves M, Andrade D, Angelidaki I, Astals S, Baier U, Bougrier C, Buffière P, Carballa M, de Wilde V, Ebertseder F, Fernández B, Ficara E, Fotidis I, Frigon JC, de Laclos HF, Ghasimi DS, Hack G, Hartel M, Heerenklage J, Horvath IS, Jenicek P, Koch K, Krautwald J, Lizasoain J, Liu J, Mosberger L, Nistor M, Oechsner H, Oliveira JV, Paterson M, Pauss A, Pommier S, Porqueddu I, Raposo F, Ribeiro T, Rüsch Pfund F, Strömberg S, Torrijos M, van Eekert M, van Lier J, Wedwitschka H, Wierinck I.

Water Sci Technol. 2016 Dec;74(11):2515-2522.

PMID:
27973356
8.

Indirect Evidence Link PCB Dehalogenation with Geobacteraceae in Anaerobic Sediment-Free Microcosms.

Praveckova M, Brennerova MV, Holliger C, De Alencastro F, Rossi P.

Front Microbiol. 2016 Jun 16;7:933. doi: 10.3389/fmicb.2016.00933. eCollection 2016.

9.

Laboratory and field scale bioremediation of hexachlorocyclohexane (HCH) contaminated soils by means of bioaugmentation and biostimulation.

Garg N, Lata P, Jit S, Sangwan N, Singh AK, Dwivedi V, Niharika N, Kaur J, Saxena A, Dua A, Nayyar N, Kohli P, Geueke B, Kunz P, Rentsch D, Holliger C, Kohler HP, Lal R.

Biodegradation. 2016 Jun;27(2-3):179-93. doi: 10.1007/s10532-016-9765-6. Epub 2016 May 3.

PMID:
27142265
10.

Role of ammonia-oxidizing bacteria in micropollutant removal from wastewater with aerobic granular sludge.

Margot J, Lochmatter S, Barry DA, Holliger C.

Water Sci Technol. 2016;73(3):564-75. doi: 10.2166/wst.2015.514.

PMID:
26877039
11.

Temporal evolution of bacterial communities associated with the in situ wetland-based remediation of a marine shore porphyry copper tailings deposit.

Diaby N, Dold B, Rohrbach E, Holliger C, Rossi P.

Sci Total Environ. 2015 Nov 15;533:110-21. doi: 10.1016/j.scitotenv.2015.06.076. Epub 2015 Jul 4.

PMID:
26151655
12.

Divergent PCB organohalide-respiring consortia enriched from the efflux channel of a former Delor manufacturer in Eastern Europe.

Praveckova M, Brennerova MV, Cvancarova M, De Alencastro LF, Holliger C, Rossi P.

Ecotoxicol Environ Saf. 2015 Oct;120:223-34. doi: 10.1016/j.ecoenv.2015.05.038. Epub 2015 Jun 16.

PMID:
26092554
13.

Harvesting of Chlorella sorokiniana by co-culture with the filamentous fungus Isaria fumosorosea: A potential sustainable feedstock for hydrothermal gasification.

Mackay S, Gomes E, Holliger C, Bauer R, Schwitzguébel JP.

Bioresour Technol. 2015 Jun;185:353-61. doi: 10.1016/j.biortech.2015.03.026. Epub 2015 Mar 11.

PMID:
25795450
14.

Functional genomics of corrinoid starvation in the organohalide-respiring bacterium Dehalobacter restrictus strain PER-K23.

Rupakula A, Lu Y, Kruse T, Boeren S, Holliger C, Smidt H, Maillard J.

Front Microbiol. 2015 Jan 6;5:751. doi: 10.3389/fmicb.2014.00751. eCollection 2014.

15.

Nitrogen removal over nitrite by aeration control in aerobic granular sludge sequencing batch reactors.

Lochmatter S, Maillard J, Holliger C.

Int J Environ Res Public Health. 2014 Jul 8;11(7):6955-78. doi: 10.3390/ijerph110706955.

16.

Multiple dual C-Cl isotope patterns associated with reductive dechlorination of tetrachloroethene.

Badin A, Buttet G, Maillard J, Holliger C, Hunkeler D.

Environ Sci Technol. 2014 Aug 19;48(16):9179-86. doi: 10.1021/es500822d. Epub 2014 Jul 23.

PMID:
25000152
17.

Multilevel correlations in the biological phosphorus removal process: From bacterial enrichment to conductivity-based metabolic batch tests and polyphosphatase assays.

Weissbrodt DG, Maillard J, Brovelli A, Chabrelie A, May J, Holliger C.

Biotechnol Bioeng. 2014 Dec;111(12):2421-35. doi: 10.1002/bit.25320. Epub 2014 Sep 10.

PMID:
24975745
18.

Optimization of operation conditions for the startup of aerobic granular sludge reactors biologically removing carbon, nitrogen, and phosphorous.

Lochmatter S, Holliger C.

Water Res. 2014 Aug 1;59:58-70. doi: 10.1016/j.watres.2014.04.011. Epub 2014 Apr 18.

PMID:
24784454
19.

Use of silicate minerals for pH control during reductive dechlorination of chloroethenes in batch cultures of different microbial consortia.

Lacroix E, Brovelli A, Barry DA, Holliger C.

Appl Environ Microbiol. 2014 Jul;80(13):3858-67. doi: 10.1128/AEM.00493-14. Epub 2014 Apr 18.

20.

Aerobic granules: microbial landscape and architecture, stages, and practical implications.

Gonzalez-Gil G, Holliger C.

Appl Environ Microbiol. 2014 Jun;80(11):3433-41. doi: 10.1128/AEM.00250-14. Epub 2014 Mar 21.

21.

Linking bacterial population dynamics and nutrient removal in the granular sludge biofilm ecosystem engineered for wastewater treatment.

Weissbrodt DG, Shani N, Holliger C.

FEMS Microbiol Ecol. 2014 Jun;88(3):579-95. doi: 10.1111/1574-6941.12326. Epub 2014 Apr 14.

22.

Use of silicate minerals for long-term pH control during reductive dechlorination of high tetrachloroethene concentrations in continuous flow-through columns.

Lacroix E, Brovelli A, Maillard J, Rohrbach-Brandt E, Barry DA, Holliger C.

Sci Total Environ. 2014 Jun 1;482-483:23-35. doi: 10.1016/j.scitotenv.2014.02.099. Epub 2014 Mar 15.

PMID:
24636885
23.

Control of groundwater pH during bioremediation: improvement and validation of a geochemical model to assess the buffering potential of ground silicate minerals.

Lacroix E, Brovelli A, Holliger C, Barry DA.

J Contam Hydrol. 2014 May;160:21-9. doi: 10.1016/j.jconhyd.2014.01.006. Epub 2014 Feb 5.

PMID:
24589423
24.

Complete genome sequence of Dehalobacter restrictus PER-K23(T.).

Kruse T, Maillard J, Goodwin L, Woyke T, Teshima H, Bruce D, Detter C, Tapia R, Han C, Huntemann M, Wei CL, Han J, Chen A, Kyrpides N, Szeto E, Markowitz V, Ivanova N, Pagani I, Pati A, Pitluck S, Nolan M, Holliger C, Smidt H.

Stand Genomic Sci. 2013 Jul 30;8(3):375-88. doi: 10.4056/sigs.3787426. eCollection 2013 Jul 30.

25.

Identification of trigger factors selecting for polyphosphate- and glycogen-accumulating organisms in aerobic granular sludge sequencing batch reactors.

Weissbrodt DG, Schneiter GS, Fürbringer JM, Holliger C.

Water Res. 2013 Dec 1;47(19):7006-18. doi: 10.1016/j.watres.2013.08.043. Epub 2013 Oct 19.

PMID:
24200006
26.

Bacterial versus fungal laccase: potential for micropollutant degradation.

Margot J, Bennati-Granier C, Maillard J, Blánquez P, Barry DA, Holliger C.

AMB Express. 2013 Oct 24;3(1):63. doi: 10.1186/2191-0855-3-63.

27.

Diversity of cobalamin riboswitches in the corrinoid-producing organohalide respirer Desulfitobacterium hafniense.

Choudhary PK, Duret A, Rohrbach-Brandt E, Holliger C, Sigel RK, Maillard J.

J Bacteriol. 2013 Nov;195(22):5186-95. doi: 10.1128/JB.00730-13. Epub 2013 Sep 13.

28.

Functional genotyping of Sulfurospirillum spp. in mixed cultures allowed the identification of a new tetrachloroethene reductive dehalogenase.

Buttet GF, Holliger C, Maillard J.

Appl Environ Microbiol. 2013 Nov;79(22):6941-7. doi: 10.1128/AEM.02312-13. Epub 2013 Aug 30.

29.

Optimized aeration strategies for nitrogen and phosphorus removal with aerobic granular sludge.

Lochmatter S, Gonzalez-Gil G, Holliger C.

Water Res. 2013 Oct 15;47(16):6187-97. doi: 10.1016/j.watres.2013.07.030. Epub 2013 Jul 31.

PMID:
23948562
30.

Enantioselective dehydrochlorination of δ-Hexachlorocyclohexane and δ-Pentachlorocyclohexene by LinA1 and LinA2 from Sphingobium indicum B90A.

Geueke B, Miska ME, Poiger T, Rentsch D, Lal R, Holliger C, Kohler HP.

Appl Environ Microbiol. 2013 Oct;79(19):6180-3. doi: 10.1128/AEM.01770-13. Epub 2013 Jul 19.

31.

Assessment of bacterial and structural dynamics in aerobic granular biofilms.

Weissbrodt DG, Neu TR, Kuhlicke U, Rappaz Y, Holliger C.

Front Microbiol. 2013 Jul 10;4:175. doi: 10.3389/fmicb.2013.00175. eCollection 2013.

32.

Influence of treatment conditions on the oxidation of micropollutants by Trametes versicolor laccase.

Margot J, Maillard J, Rossi L, Barry DA, Holliger C.

N Biotechnol. 2013 Sep 25;30(6):803-13. doi: 10.1016/j.nbt.2013.06.004. Epub 2013 Jul 3.

PMID:
23831273
33.

Correlations between environmental variables and bacterial community structures suggest Fe(III) and vinyl chloride reduction as antagonistic terminal electron-accepting processes.

Shani N, Rossi P, Holliger C.

Environ Sci Technol. 2013 Jul 2;47(13):6836-45. doi: 10.1021/es304017s. Epub 2013 Apr 10.

PMID:
23484639
34.

The restricted metabolism of the obligate organohalide respiring bacterium Dehalobacter restrictus: lessons from tiered functional genomics.

Rupakula A, Kruse T, Boeren S, Holliger C, Smidt H, Maillard J.

Philos Trans R Soc Lond B Biol Sci. 2013 Mar 11;368(1616):20120325. doi: 10.1098/rstb.2012.0325. Print 2013 Apr 19.

35.

PyroTRF-ID: a novel bioinformatics methodology for the affiliation of terminal-restriction fragments using 16S rRNA gene pyrosequencing data.

Weissbrodt DG, Shani N, Sinclair L, Lefebvre G, Rossi P, Maillard J, Rougemont J, Holliger C.

BMC Microbiol. 2012 Dec 27;12:306. doi: 10.1186/1471-2180-12-306.

36.

Metabolomics of hexachlorocyclohexane (HCH) transformation: ratio of LinA to LinB determines metabolic fate of HCH isomers.

Geueke B, Garg N, Ghosh S, Fleischmann T, Holliger C, Lal R, Kohler HP.

Environ Microbiol. 2013 Apr;15(4):1040-9. doi: 10.1111/1462-2920.12009. Epub 2012 Nov 1.

PMID:
23121161
37.

Ecology and biogeography of bacterial communities associated with chloroethene-contaminated aquifers.

Rossi P, Shani N, Kohler F, Imfeld G, Holliger C.

Front Microbiol. 2012 Jul 23;3:260. doi: 10.3389/fmicb.2012.00260. eCollection 2012.

38.

Bacterial Selection during the Formation of Early-Stage Aerobic Granules in Wastewater Treatment Systems Operated Under Wash-Out Dynamics.

Weissbrodt DG, Lochmatter S, Ebrahimi S, Rossi P, Maillard J, Holliger C.

Front Microbiol. 2012 Sep 13;3:332. eCollection 2012.

39.

The physiological opportunism of Desulfitobacterium hafniense strain TCE1 towards organohalide respiration with tetrachloroethene.

Duret A, Holliger C, Maillard J.

Appl Environ Microbiol. 2012 Sep;78(17):6121-7. doi: 10.1128/AEM.01221-12. Epub 2012 Jun 22.

40.

An unusual tandem-domain rhodanese harbouring two active sites identified in Desulfitobacterium hafniense.

Prat L, Maillard J, Rohrbach-Brandt E, Holliger C.

FEBS J. 2012 Aug;279(15):2754-67. doi: 10.1111/j.1742-4658.2012.08660.x. Epub 2012 Jul 9.

41.

Enzymatic conversion of ε-hexachlorocyclohexane and a heptachlorocyclohexane isomer, two neglected components of technical hexachlorocyclohexane.

Bala K, Geueke B, Miska ME, Rentsch D, Poiger T, Dadhwal M, Lal R, Holliger C, Kohler HP.

Environ Sci Technol. 2012 Apr 3;46(7):4051-8. doi: 10.1021/es204143x. Epub 2012 Mar 20.

PMID:
22385211
42.

Dynamics of microbial community structure of and enhanced biological phosphorus removal by aerobic granules cultivated on propionate or acetate.

Gonzalez-Gil G, Holliger C.

Appl Environ Microbiol. 2011 Nov;77(22):8041-51. doi: 10.1128/AEM.05738-11. Epub 2011 Sep 16.

43.

Nitrogen removal from digested manure in a simple one-stage process.

Villegas JD, de Laclos HF, Dovat J, Membrez Y, Holliger C.

Water Sci Technol. 2011;63(9):1991-6.

PMID:
21902040
44.

Redundancy and specificity of multiple trigger factor chaperones in Desulfitobacteria.

Maillard J, Genevaux P, Holliger C.

Microbiology. 2011 Aug;157(Pt 8):2410-21. doi: 10.1099/mic.0.050880-0. Epub 2011 May 26.

PMID:
21622524
45.

Anaerobic degradation of vinyl chloride in aquifer microcosms.

Smits TH, Assal A, Hunkeler D, Holliger C.

J Environ Qual. 2011 May-Jun;40(3):915-22. doi: 10.2134/jeq2010.0403.

PMID:
21546677
46.

Physiological adaptation of Desulfitobacterium hafniense strain TCE1 to tetrachloroethene respiration.

Prat L, Maillard J, Grimaud R, Holliger C.

Appl Environ Microbiol. 2011 Jun;77(11):3853-9. doi: 10.1128/AEM.02471-10. Epub 2011 Apr 8.

47.

Reductive dechlorination of tetrachloroethene by a stepwise catalysis of different organohalide respiring bacteria and reductive dehalogenases.

Maillard J, Charnay MP, Regeard C, Rohrbach-Brandt E, Rouzeau-Szynalski K, Rossi P, Holliger C.

Biodegradation. 2011 Sep;22(5):949-60. doi: 10.1007/s10532-011-9454-4. Epub 2011 Jan 18.

PMID:
21243405
48.

Frequent concomitant presence of Desulfitobacterium spp. and "Dehalococcoides" spp. in chloroethene-dechlorinating microbial communities.

Rouzeau-Szynalski K, Maillard J, Holliger C.

Appl Microbiol Biotechnol. 2011 Apr;90(1):361-8. doi: 10.1007/s00253-010-3042-0. Epub 2010 Dec 9.

PMID:
21152914
49.

Performance and microbial community composition dynamics of aerobic granular sludge from sequencing batch bubble column reactors operated at 20 degrees C, 30 degrees C, and 35 degrees C.

Ebrahimi S, Gabus S, Rohrbach-Brandt E, Hosseini M, Rossi P, Maillard J, Holliger C.

Appl Microbiol Biotechnol. 2010 Jul;87(4):1555-68. doi: 10.1007/s00253-010-2621-4. Epub 2010 May 12.

PMID:
20461512
50.

Biochemistry of microbial degradation of hexachlorocyclohexane and prospects for bioremediation.

Lal R, Pandey G, Sharma P, Kumari K, Malhotra S, Pandey R, Raina V, Kohler HP, Holliger C, Jackson C, Oakeshott JG.

Microbiol Mol Biol Rev. 2010 Mar;74(1):58-80. doi: 10.1128/MMBR.00029-09. Review.

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