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Items: 1 to 50 of 62

1.

Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution.

Ren M, Feng X, Huang Y, Wang H, Hu Z, Clingenpeel S, Swan BK, Fonseca MM, Posada D, Stepanauskas R, Hollibaugh JT, Foster PG, Woyke T, Luo H.

ISME J. 2019 Apr 25. doi: 10.1038/s41396-019-0418-8. [Epub ahead of print]

PMID:
31024152
2.

Transcriptional response of the obligate anaerobe Desulfuribacillus stibiiarsenatis MLFW-2T to growth on antimonate and other terminal electron acceptors.

Abin CA, Hollibaugh JT.

Environ Microbiol. 2019 Feb;21(2):618-630. doi: 10.1111/1462-2920.14503. Epub 2019 Jan 13.

PMID:
30548120
3.

Composition and Activity of Microbial Communities along the Redox Gradient of an Alkaline, Hypersaline, Lake.

Edwardson CF, Hollibaugh JT.

Front Microbiol. 2018 Jan 31;9:14. doi: 10.3389/fmicb.2018.00014. eCollection 2018.

4.

Light and temperature control the seasonal distribution of thaumarchaeota in the South Atlantic bight.

Liu Q, Tolar BB, Ross MJ, Cheek JB, Sweeney CM, Wallsgrove NJ, Popp BN, Hollibaugh JT.

ISME J. 2018 Jun;12(6):1473-1485. doi: 10.1038/s41396-018-0066-4. Epub 2018 Feb 14.

5.

Autotrophic microbial arsenotrophy in arsenic-rich soda lakes.

Oremland RS, Saltikov CW, Stolz JF, Hollibaugh JT.

FEMS Microbiol Lett. 2017 Aug 15;364(15). doi: 10.1093/femsle/fnx146. Review.

PMID:
28859313
6.

Metatranscriptomic analysis of prokaryotic communities active in sulfur and arsenic cycling in Mono Lake, California, USA.

Edwardson CF, Hollibaugh JT.

ISME J. 2017 Oct;11(10):2195-2208. doi: 10.1038/ismej.2017.80. Epub 2017 May 26.

7.

Oxygen and the activity and distribution of marine Thaumarchaeota.

Hollibaugh JT.

Environ Microbiol Rep. 2017 Jun;9(3):186-188. doi: 10.1111/1758-2229.12534. No abstract available.

PMID:
28401690
8.

Temperature Decouples Ammonium and Nitrite Oxidation in Coastal Waters.

Schaefer SC, Hollibaugh JT.

Environ Sci Technol. 2017 Mar 21;51(6):3157-3164. doi: 10.1021/acs.est.6b03483. Epub 2017 Mar 3.

PMID:
28225262
9.

Ecotype diversification of an abundant Roseobacter lineage.

Sun Y, Zhang Y, Hollibaugh JT, Luo H.

Environ Microbiol. 2017 Apr;19(4):1625-1638. doi: 10.1111/1462-2920.13683. Epub 2017 Feb 24.

PMID:
28142225
10.
12.
13.

Oxidation of urea-derived nitrogen by thaumarchaeota-dominated marine nitrifying communities.

Tolar BB, Wallsgrove NJ, Popp BN, Hollibaugh JT.

Environ Microbiol. 2017 Dec;19(12):4838-4850. doi: 10.1111/1462-2920.13457. Epub 2016 Aug 11.

PMID:
27422798
14.

Contribution of ammonia oxidation to chemoautotrophy in Antarctic coastal waters.

Tolar BB, Ross MJ, Wallsgrove NJ, Liu Q, Aluwihare LI, Popp BN, Hollibaugh JT.

ISME J. 2016 Nov;10(11):2605-2619. doi: 10.1038/ismej.2016.61. Epub 2016 May 17.

15.

Living oysters and their shells as sites of nitrification and denitrification.

Caffrey JM, Hollibaugh JT, Mortazavi B.

Mar Pollut Bull. 2016 Nov 15;112(1-2):86-90. doi: 10.1016/j.marpolbul.2016.08.038. Epub 2016 Aug 24.

PMID:
27567196
16.

Low genome content diversity of marine planktonic Thaumarchaeota.

Luo H, Sun Y, Hollibaugh JT, Moran MA.

Environ Microbiol Rep. 2016 Aug;8(4):501-7. doi: 10.1111/1758-2229.12417. Epub 2016 Jun 27.

PMID:
27120311
17.

Identification of polyamine-responsive bacterioplankton taxa in South Atlantic Bight.

Lu X, Sun S, Hollibaugh JT, Mou X.

Environ Microbiol Rep. 2015 Dec;7(6):831-8. doi: 10.1111/1758-2229.12311. Epub 2015 Aug 7.

PMID:
26109269
18.

Temporal and vertical distributions of bacterioplankton at the Gray's Reef National Marine Sanctuary.

Lu X, Sun S, Zhang YQ, Hollibaugh JT, Mou X.

Appl Environ Microbiol. 2015 Feb;81(3):910-7. doi: 10.1128/AEM.02802-14. Epub 2014 Nov 21.

19.

Transformation of monothioarsenate by haloalkaliphilic, anoxygenic photosynthetic purple sulfur bacteria.

Edwardson CF, Planer-Friedrich B, Hollibaugh JT.

FEMS Microbiol Ecol. 2014 Dec;90(3):858-68. doi: 10.1111/1574-6941.12440. Epub 2014 Nov 5.

20.

Occurrence and distribution of Vibrio vulnificus and Vibrio parahaemolyticus--potential roles for fish, oyster, sediment and water.

Givens CE, Bowers JC, DePaola A, Hollibaugh JT, Jones JL.

Lett Appl Microbiol. 2014 Jun;58(6):503-10. doi: 10.1111/lam.12226. Epub 2014 Feb 27.

21.

A microarray for assessing transcription from pelagic marine microbial taxa.

Shilova IN, Robidart JC, James Tripp H, Turk-Kubo K, Wawrik B, Post AF, Thompson AW, Ward B, Hollibaugh JT, Millard A, Ostrowski M, Scanlan DJ, Paerl RW, Stuart R, Zehr JP.

ISME J. 2014 Jul;8(7):1476-91. doi: 10.1038/ismej.2014.1. Epub 2014 Jan 30.

22.

Alkane hydroxylase gene (alkB) phylotype composition and diversity in northern Gulf of Mexico bacterioplankton.

Smith CB, Tolar BB, Hollibaugh JT, King GM.

Front Microbiol. 2013 Dec 12;4:370. doi: 10.3389/fmicb.2013.00370. eCollection 2013.

23.

Dissimilatory antimonate reduction and production of antimony trioxide microcrystals by a novel microorganism.

Abin CA, Hollibaugh JT.

Environ Sci Technol. 2014;48(1):681-8. doi: 10.1021/es404098z. Epub 2013 Dec 17.

PMID:
24319985
24.

Single-cell genomics shedding light on marine Thaumarchaeota diversification.

Luo H, Tolar BB, Swan BK, Zhang CL, Stepanauskas R, Ann Moran M, Hollibaugh JT.

ISME J. 2014 Mar;8(3):732-6. doi: 10.1038/ismej.2013.202. Epub 2013 Nov 7.

25.

Seasonal variation in the metatranscriptomes of a Thaumarchaeota population from SE USA coastal waters.

Hollibaugh JT, Gifford SM, Moran MA, Ross MJ, Sharma S, Tolar BB.

ISME J. 2014 Mar;8(3):685-98. doi: 10.1038/ismej.2013.171. Epub 2013 Oct 17.

26.

Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the gulf of Mexico.

Dubinsky EA, Conrad ME, Chakraborty R, Bill M, Borglin SE, Hollibaugh JT, Mason OU, M Piceno Y, Reid FC, Stringfellow WT, Tom LM, Hazen TC, Andersen GL.

Environ Sci Technol. 2013 Oct 1;47(19):10860-7. doi: 10.1021/es401676y. Epub 2013 Sep 19.

PMID:
23937111
27.

An analysis of thaumarchaeota populations from the northern gulf of Mexico.

Tolar BB, King GM, Hollibaugh JT.

Front Microbiol. 2013 Apr 9;4:72. doi: 10.3389/fmicb.2013.00072. eCollection 2013.

28.

Analysis of composition and structure of coastal to mesopelagic bacterioplankton communities in the northern gulf of Mexico.

King GM, Smith CB, Tolar B, Hollibaugh JT.

Front Microbiol. 2013 Jan 18;3:438. doi: 10.3389/fmicb.2012.00438. eCollection 2012.

29.

Ciliate ingestion and digestion: flow cytometric measurements and regrowth of a digestion-resistant Campylobacter jejuni.

First MR, Park NY, Berrang ME, Meinersmann RJ, Bernhard JM, Gast RJ, Hollibaugh JT.

J Eukaryot Microbiol. 2012 Jan-Feb;59(1):12-9. doi: 10.1111/j.1550-7408.2011.00589.x. Epub 2011 Nov 7.

PMID:
22092598
30.

Measuring unbiased metatranscriptomics in suboxic waters of the central Baltic Sea using a new in situ fixation system.

Feike J, Jürgens K, Hollibaugh JT, Krüger S, Jost G, Labrenz M.

ISME J. 2012 Feb;6(2):461-70. doi: 10.1038/ismej.2011.94. Epub 2011 Jul 21.

31.

Metatranscriptomic analysis of ammonia-oxidizing organisms in an estuarine bacterioplankton assemblage.

Hollibaugh JT, Gifford S, Sharma S, Bano N, Moran MA.

ISME J. 2011 May;5(5):866-78. doi: 10.1038/ismej.2010.172. Epub 2010 Nov 18.

32.

Ascomycete fungal communities associated with early decaying leaves of Spartina spp. from central California estuaries.

Lyons JI, Alber M, Hollibaugh JT.

Oecologia. 2010 Feb;162(2):435-42. doi: 10.1007/s00442-009-1460-4. Epub 2009 Sep 24.

PMID:
19777266
33.

Ammonia-oxidizing Archaea in the Arctic Ocean and Antarctic coastal waters.

Kalanetra KM, Bano N, Hollibaugh JT.

Environ Microbiol. 2009 Sep;11(9):2434-45. doi: 10.1111/j.1462-2920.2009.01974.x. Epub 2009 Jul 6.

PMID:
19601959
34.

Population growth away from the coastal zone: thirty years of land use change and nutrient export in the Altamaha River, GA.

Weston NB, Hollibaugh JT, Joye SB.

Sci Total Environ. 2009 May 1;407(10):3347-56. doi: 10.1016/j.scitotenv.2008.12.066. Epub 2009 Feb 25.

PMID:
19246074
35.

Arsenic(III) fuels anoxygenic photosynthesis in hot spring biofilms from Mono Lake, California.

Kulp TR, Hoeft SE, Asao M, Madigan MT, Hollibaugh JT, Fisher JC, Stolz JF, Culbertson CW, Miller LG, Oremland RS.

Science. 2008 Aug 15;321(5891):967-70. doi: 10.1126/science.1160799.

36.

A new role for sulfur in arsenic cycling.

Fisher JC, Wallschläger D, Planer-Friedrich B, Hollibaugh JT.

Environ Sci Technol. 2008 Jan 1;42(1):81-5.

PMID:
18350879
37.

Selenate-dependent anaerobic arsenite oxidation by a bacterium from Mono Lake, California.

Fisher JC, Hollibaugh JT.

Appl Environ Microbiol. 2008 May;74(9):2588-94. doi: 10.1128/AEM.01995-07. Epub 2008 Mar 7.

38.

Arsenite-dependent photoautotrophy by an Ectothiorhodospira-dominated consortium.

Budinoff CR, Hollibaugh JT.

ISME J. 2008 Mar;2(3):340-3. doi: 10.1038/ismej.2007.115. Epub 2008 Jan 24.

PMID:
18219283
39.

Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia.

Caffrey JM, Bano N, Kalanetra K, Hollibaugh JT.

ISME J. 2007 Nov;1(7):660-2. Epub 2007 Oct 4.

PMID:
18043673
40.
41.

Dominance of Mycoplasma in the guts of the Long-Jawed Mudsucker, Gillichthys mirabilis, from five California salt marshes.

Bano N, DeRae Smith A, Bennett W, Vasquez L, Hollibaugh JT.

Environ Microbiol. 2007 Oct;9(10):2636-41.

PMID:
17803786
42.

Dynamics of nitrous oxide reductase genes (nosZ) in intertidal rocky biofilms and sediments of the Douro River estuary (Portugal), and their relation to N-biogeochemistry.

Magalhães C, Bano N, Wiebe WJ, Bordalo AA, Hollibaugh JT.

Microb Ecol. 2008 Feb;55(2):259-69. Epub 2007 Jul 1. Erratum in: Microb Ecol. 2008 Nov;56(4):765-6.

PMID:
17604988
43.

Comparison of chitinolytic enzymes from an alkaline, hypersaline lake and an estuary.

LeCleir GR, Buchan A, Maurer J, Moran MA, Hollibaugh JT.

Environ Microbiol. 2007 Jan;9(1):197-205.

PMID:
17227424
44.

Sulfide oxidation coupled to arsenate reduction by a diverse microbial community in a soda lake.

Hollibaugh JT, Budinoff C, Hollibaugh RA, Ransom B, Bano N.

Appl Environ Microbiol. 2006 Mar;72(3):2043-9.

45.
46.

Analysis of microbial gene transcripts in environmental samples.

Poretsky RS, Bano N, Buchan A, LeCleir G, Kleikemper J, Pickering M, Pate WM, Moran MA, Hollibaugh JT.

Appl Environ Microbiol. 2005 Jul;71(7):4121-6.

47.

Chitinase gene sequences retrieved from diverse aquatic habitats reveal environment-specific distributions.

LeCleir GR, Buchan A, Hollibaugh JT.

Appl Environ Microbiol. 2004 Dec;70(12):6977-83.

48.

Vertical distribution of nitrogen-fixing phylotypes in a meromictic, hypersaline lake.

Steward GF, Zehr JP, Jellison R, Montoya JP, Hollibaugh JT.

Microb Ecol. 2004 Jan;47(1):30-40.

PMID:
15259267
49.

Distribution of RuBisCO genotypes along a redox gradient in Mono Lake, California.

Giri BJ, Bano N, Hollibaugh JT.

Appl Environ Microbiol. 2004 Jun;70(6):3443-8. Erratum in: Appl Environ Microbiol. 2004 Aug;70(8):5055.

50.

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