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Sumoylation and phosphorylation: hidden and overt links.

Tomanov K, Nukarinen E, Vicente J, Mendiondo GM, Winter N, Nehlin L, Weckwerth W, Holdsworth MJ, Teige M, Bachmair A.

J Exp Bot. 2018 May 25. doi: 10.1093/jxb/ery167. [Epub ahead of print]


Finite indentation of highly curved elastic shells.

Pearce SP, King JR, Steinbrecher T, Leubner-Metzger G, Everitt NM, Holdsworth MJ.

Proc Math Phys Eng Sci. 2018 Jan;474(2209):20170482. doi: 10.1098/rspa.2017.0482. Epub 2018 Jan 24.


N-term 2017: Proteostasis via the N-terminus.

Dissmeyer N, Graciet E, Holdsworth MJ, Gibbs DJ.

Trends Biochem Sci. 2017 Dec 9. pii: S0968-0004(17)30219-0. doi: 10.1016/j.tibs.2017.11.006. [Epub ahead of print]


N-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway.

Zhang H, Gannon L, Hassall KL, Deery MJ, Gibbs DJ, Holdsworth MJ, van der Hoorn RAL, Lilley KS, Theodoulou FL.

New Phytol. 2018 May;218(3):1106-1126. doi: 10.1111/nph.14909. Epub 2017 Nov 23.


The Cys-Arg/N-End Rule Pathway Is a General Sensor of Abiotic Stress in Flowering Plants.

Vicente J, Mendiondo GM, Movahedi M, Peirats-Llobet M, Juan YT, Shen YY, Dambire C, Smart K, Rodriguez PL, Charng YY, Gray JE, Holdsworth MJ.

Curr Biol. 2017 Oct 23;27(20):3183-3190.e4. doi: 10.1016/j.cub.2017.09.006. Epub 2017 Oct 12.


First hints of new sensors.

Holdsworth MJ.

Nat Plants. 2017 Oct;3(10):767-768. doi: 10.1038/s41477-017-0031-7. No abstract available.


Community recommendations on terminology and procedures used in flooding and low oxygen stress research.

Sasidharan R, Bailey-Serres J, Ashikari M, Atwell BJ, Colmer TD, Fagerstedt K, Fukao T, Geigenberger P, Hebelstrup KH, Hill RD, Holdsworth MJ, Ismail AM, Licausi F, Mustroph A, Nakazono M, Pedersen O, Perata P, Sauter M, Shih MC, Sorrell BK, Striker GG, van Dongen JT, Whelan J, Xiao S, Visser EJW, Voesenek LACJ.

New Phytol. 2017 Jun;214(4):1403-1407. doi: 10.1111/nph.14519. Epub 2017 Mar 9. No abstract available.


Hypoxia response in Arabidopsis roots infected by Plasmodiophora brassicae supports the development of clubroot.

Gravot A, Richard G, Lime T, Lemarié S, Jubault M, Lariagon C, Lemoine J, Vicente J, Robert-Seilaniantz A, Holdsworth MJ, Manzanares-Dauleux MJ.

BMC Plant Biol. 2016 Nov 11;16(1):251.


Dormant and after-Ripened Arabidopsis thaliana Seeds are Distinguished by Early Transcriptional Differences in the Imbibed State.

Dekkers BJ, Pearce SP, van Bolderen-Veldkamp RP, Holdsworth MJ, Bentsink L.

Front Plant Sci. 2016 Aug 30;7:1323. doi: 10.3389/fpls.2016.01323. eCollection 2016.


From start to finish: amino-terminal protein modifications as degradation signals in plants.

Gibbs DJ, Bailey M, Tedds HM, Holdsworth MJ.

New Phytol. 2016 Sep;211(4):1188-94. doi: 10.1111/nph.14105. Epub 2016 Jul 21. Review.


The wheat Phs-A1 pre-harvest sprouting resistance locus delays the rate of seed dormancy loss and maps 0.3 cM distal to the PM19 genes in UK germplasm.

Shorinola O, Bird N, Simmonds J, Berry S, Henriksson T, Jack P, Werner P, Gerjets T, Scholefield D, Balcárková B, Valárik M, Holdsworth MJ, Flintham J, Uauy C.

J Exp Bot. 2016 Jul;67(14):4169-78. doi: 10.1093/jxb/erw194. Epub 2016 May 23.


Oxygen sensing coordinates photomorphogenesis to facilitate seedling survival.

Abbas M, Berckhan S, Rooney DJ, Gibbs DJ, Vicente Conde J, Sousa Correia C, Bassel GW, Marín-de la Rosa N, León J, Alabadí D, Blázquez MA, Holdsworth MJ.

Curr Biol. 2015 Jun 1;25(11):1483-8. doi: 10.1016/j.cub.2015.03.060. Epub 2015 May 14.


Group VII Ethylene Response Factors Coordinate Oxygen and Nitric Oxide Signal Transduction and Stress Responses in Plants.

Gibbs DJ, Conde JV, Berckhan S, Prasad G, Mendiondo GM, Holdsworth MJ.

Plant Physiol. 2015 Sep;169(1):23-31. doi: 10.1104/pp.15.00338. Epub 2015 May 5. Review.


Enhanced waterlogging tolerance in barley by manipulation of expression of the N-end rule pathway E3 ligase PROTEOLYSIS6.

Mendiondo GM, Gibbs DJ, Szurman-Zubrzycka M, Korn A, Marquez J, Szarejko I, Maluszynski M, King J, Axcell B, Smart K, Corbineau F, Holdsworth MJ.

Plant Biotechnol J. 2016 Jan;14(1):40-50. doi: 10.1111/pbi.12334. Epub 2015 Feb 6.


Promotion of testa rupture during garden cress germination involves seed compartment-specific expression and activity of pectin methylesterases.

Scheler C, Weitbrecht K, Pearce SP, Hampstead A, Büttner-Mainik A, Lee KJ, Voegele A, Oracz K, Dekkers BJ, Wang X, Wood AT, Bentsink L, King JR, Knox JP, Holdsworth MJ, Müller K, Leubner-Metzger G.

Plant Physiol. 2015 Jan;167(1):200-15. doi: 10.1104/pp.114.247429. Epub 2014 Nov 26.


Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners.

Marín-de la Rosa N, Sotillo B, Miskolczi P, Gibbs DJ, Vicente J, Carbonero P, Oñate-Sánchez L, Holdsworth MJ, Bhalerao R, Alabadí D, Blázquez MA.

Plant Physiol. 2014 Oct;166(2):1022-32. doi: 10.1104/pp.114.244723. Epub 2014 Aug 12.


Barley has two peroxisomal ABC transporters with multiple functions in β-oxidation.

Mendiondo GM, Medhurst A, van Roermund CW, Zhang X, Devonshire J, Scholefield D, Fernández J, Axcell B, Ramsay L, Waterham HR, Waugh R, Theodoulou FL, Holdsworth MJ.

J Exp Bot. 2014 Sep;65(17):4833-47. doi: 10.1093/jxb/eru243. Epub 2014 Jun 9.


Mechanical constraints imposed by 3D cellular geometry and arrangement modulate growth patterns in the Arabidopsis embryo.

Bassel GW, Stamm P, Mosca G, Barbier de Reuille P, Gibbs DJ, Winter R, Janka A, Holdsworth MJ, Smith RS.

Proc Natl Acad Sci U S A. 2014 Jun 10;111(23):8685-90. doi: 10.1073/pnas.1404616111. Epub 2014 May 27.


The eukaryotic N-end rule pathway: conserved mechanisms and diverse functions.

Gibbs DJ, Bacardit J, Bachmair A, Holdsworth MJ.

Trends Cell Biol. 2014 Oct;24(10):603-11. doi: 10.1016/j.tcb.2014.05.001. Epub 2014 May 26. Review.


Nitric oxide sensing in plants is mediated by proteolytic control of group VII ERF transcription factors.

Gibbs DJ, Md Isa N, Movahedi M, Lozano-Juste J, Mendiondo GM, Berckhan S, Marín-de la Rosa N, Vicente Conde J, Sousa Correia C, Pearce SP, Bassel GW, Hamali B, Talloji P, Tomé DF, Coego A, Beynon J, Alabadí D, Bachmair A, León J, Gray JE, Theodoulou FL, Holdsworth MJ.

Mol Cell. 2014 Feb 6;53(3):369-79. doi: 10.1016/j.molcel.2013.12.020. Epub 2014 Jan 23.


Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination.

Dekkers BJ, Pearce S, van Bolderen-Veldkamp RP, Marshall A, Widera P, Gilbert J, Drost HG, Bassel GW, Müller K, King JR, Wood AT, Grosse I, Quint M, Krasnogor N, Leubner-Metzger G, Holdsworth MJ, Bentsink L.

Plant Physiol. 2013 Sep;163(1):205-15. doi: 10.1104/pp.113.223511. Epub 2013 Jul 15.


Arabidopsis PYR/PYL/RCAR receptors play a major role in quantitative regulation of stomatal aperture and transcriptional response to abscisic acid.

Gonzalez-Guzman M, Pizzio GA, Antoni R, Vera-Sirera F, Merilo E, Bassel GW, Fernández MA, Holdsworth MJ, Perez-Amador MA, Kollist H, Rodriguez PL.

Plant Cell. 2012 Jun;24(6):2483-96. doi: 10.1105/tpc.112.098574. Epub 2012 Jun 26.


Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling.

Middleton AM, Úbeda-Tomás S, Griffiths J, Holman T, Hedden P, Thomas SG, Phillips AL, Holdsworth MJ, Bennett MJ, King JR, Owen MR.

Proc Natl Acad Sci U S A. 2012 May 8;109(19):7571-6. doi: 10.1073/pnas.1113666109. Epub 2012 Apr 20.


Axisymmetric indentation of curved elastic membranes by a convex rigid indenter.

Pearce SP, King JR, Holdsworth MJ.

Int J Non Linear Mech. 2011 Nov;46(9):1128-1138.


Making sense of low oxygen sensing.

Bailey-Serres J, Fukao T, Gibbs DJ, Holdsworth MJ, Lee SC, Licausi F, Perata P, Voesenek LA, van Dongen JT.

Trends Plant Sci. 2012 Mar;17(3):129-38. doi: 10.1016/j.tplants.2011.12.004. Epub 2012 Jan 24. Review.


Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants.

Gibbs DJ, Lee SC, Isa NM, Gramuglia S, Fukao T, Bassel GW, Correia CS, Corbineau F, Theodoulou FL, Bailey-Serres J, Holdsworth MJ.

Nature. 2011 Oct 23;479(7373):415-8. doi: 10.1038/nature10534.


Seed bioinformatics.

Bassel GW, Holdsworth MJ, Provart NJ.

Methods Mol Biol. 2011;773:403-19. doi: 10.1007/978-1-61779-231-1_23.


Functional network construction in Arabidopsis using rule-based machine learning on large-scale data sets.

Bassel GW, Glaab E, Marquez J, Holdsworth MJ, Bacardit J.

Plant Cell. 2011 Sep;23(9):3101-16. doi: 10.1105/tpc.111.088153. Epub 2011 Sep 6.


Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions.

Bassel GW, Lan H, Glaab E, Gibbs DJ, Gerjets T, Krasnogor N, Bonner AJ, Holdsworth MJ, Provart NJ.

Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9709-14. doi: 10.1073/pnas.1100958108. Epub 2011 May 18.


Short-Root regulates primary, lateral, and adventitious root development in Arabidopsis.

Lucas M, Swarup R, Paponov IA, Swarup K, Casimiro I, Lake D, Peret B, Zappala S, Mairhofer S, Whitworth M, Wang J, Ljung K, Marchant A, Sandberg G, Holdsworth MJ, Palme K, Pridmore T, Mooney S, Bennett MJ.

Plant Physiol. 2011 Jan;155(1):384-98. doi: 10.1104/pp.110.165126. Epub 2010 Oct 27.


Statistical evaluation of transcriptomic data generated using the Affymetrix one-cycle, two-cycle and IVT-Express RNA labelling protocols with the Arabidopsis ATH1 microarray.

Holman TJ, Wilson MH, Kenobi K, Dryden IL, Hodgman TC, Wood AT, Holdsworth MJ.

Plant Methods. 2010 Mar 15;6:9. doi: 10.1186/1746-4811-6-9.


An analysis of dormancy, ABA responsiveness, after-ripening and pre-harvest sprouting in hexaploid wheat (Triticum aestivum L.) caryopses.

Gerjets T, Scholefield D, Foulkes MJ, Lenton JR, Holdsworth MJ.

J Exp Bot. 2010;61(2):597-607. doi: 10.1093/jxb/erp329. Epub 2009 Nov 18.


The NBDs that wouldn't die: A cautionary tale of the use of isolated nucleotide binding domains of ABC transporters.

De Marcos Lousa C, Dietrich D, Johnson B, Baldwin SA, Holdsworth MJ, Theodoulou FL, Baker A.

Commun Integr Biol. 2009;2(2):97-9.


The N-end rule pathway promotes seed germination and establishment through removal of ABA sensitivity in Arabidopsis.

Holman TJ, Jones PD, Russell L, Medhurst A, Ubeda Tomás S, Talloji P, Marquez J, Schmuths H, Tung SA, Taylor I, Footitt S, Bachmair A, Theodoulou FL, Holdsworth MJ.

Proc Natl Acad Sci U S A. 2009 Mar 17;106(11):4549-54. doi: 10.1073/pnas.0810280106. Epub 2009 Mar 2.


Mutations in the Arabidopsis peroxisomal ABC transporter COMATOSE allow differentiation between multiple functions in planta: insights from an allelic series.

Dietrich D, Schmuths H, De Marcos Lousa C, Baldwin JM, Baldwin SA, Baker A, Theodoulou FL, Holdsworth MJ.

Mol Biol Cell. 2009 Jan;20(1):530-43. doi: 10.1091/mbc.E08-07-0745. Epub 2008 Nov 19.


Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germination.

Holdsworth MJ, Bentsink L, Soppe WJ.

New Phytol. 2008;179(1):33-54. doi: 10.1111/j.1469-8137.2008.02437.x. Epub 2008 Apr 14. Review.


Post-genomics dissection of seed dormancy and germination.

Holdsworth MJ, Finch-Savage WE, Grappin P, Job D.

Trends Plant Sci. 2008 Jan;13(1):7-13. Epub 2007 Dec 21. Review.


Seed after-ripening is a discrete developmental pathway associated with specific gene networks in Arabidopsis.

Carrera E, Holman T, Medhurst A, Dietrich D, Footitt S, Theodoulou FL, Holdsworth MJ.

Plant J. 2008 Jan;53(2):214-24. Epub 2007 Nov 19.


Nicotinamidase activity is important for germination.

Hunt L, Holdsworth MJ, Gray JE.

Plant J. 2007 Aug;51(3):341-51. Epub 2007 Jun 22.


The COMATOSE ATP-binding cassette transporter is required for full fertility in Arabidopsis.

Footitt S, Dietrich D, Fait A, Fernie AR, Holdsworth MJ, Baker A, Theodoulou FL.

Plant Physiol. 2007 Jul;144(3):1467-80. Epub 2007 Apr 27.


Gene expression profiling reveals defined functions of the ATP-binding cassette transporter COMATOSE late in phase II of germination.

Carrera E, Holman T, Medhurst A, Peer W, Schmuths H, Footitt S, Theodoulou FL, Holdsworth MJ.

Plant Physiol. 2007 Apr;143(4):1669-79. Epub 2007 Feb 23.


Transgenesis has less impact on the transcriptome of wheat grain than conventional breeding.

Baudo MM, Lyons R, Powers S, Pastori GM, Edwards KJ, Holdsworth MJ, Shewry PR.

Plant Biotechnol J. 2006 Jul;4(4):369-80.


A transcriptomics resource for wheat functional genomics.

Wilson ID, Barker GL, Beswick RW, Shepherd SK, Lu C, Coghill JA, Edwards D, Owen P, Lyons R, Parker JS, Lenton JR, Holdsworth MJ, Shewry PR, Edwards KJ.

Plant Biotechnol J. 2004 Nov;2(6):495-506.


Antecedents and concomitants of parenting stress in adolescent mothers in foster care.

Budd KS, Holdsworth MJ, HoganBruen KD.

Child Abuse Negl. 2006 May;30(5):557-74. Epub 2006 May 18.


New frontiers in plant development: from genes to phenotype.

Hedden P, Holdsworth MJ, Simpson GG, Edwards KJ, Lenton JR.

Trends Plant Sci. 2002 Sep;7(9):381-3. No abstract available.


Transcripts of Vp-1 homeologues are misspliced in modern wheat and ancestral species.

McKibbin RS, Wilkinson MD, Bailey PC, Flintham JE, Andrew LM, Lazzeri PA, Gale MD, Lenton JR, Holdsworth MJ.

Proc Natl Acad Sci U S A. 2002 Jul 23;99(15):10203-8. Epub 2002 Jul 15.


The maize transcription factor Opaque-2 activates a wheat glutenin promoter in plant and yeast cells.

Holdsworth MJ, Muñoz-Blanco J, Hammond-Kosack M, Colot V, Schuch W, Bevan MW.

Plant Mol Biol. 1995 Nov;29(4):711-20.


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