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Items: 1 to 50 of 135

1.

Review of the sustainability of food systems and transition using the Internet of Food.

Holden NM, White EP, Lange MC, Oldfield TL.

NPJ Sci Food. 2018 Oct 9;2:18. doi: 10.1038/s41538-018-0027-3. eCollection 2018. Review.

PMID:
31304268
2.

Influence of Plant Species, Tissue Type, and Temperature on the Capacity of Shiga-Toxigenic Escherichia coli To Colonize, Grow, and Be Internalized by Plants.

Merget B, Forbes KJ, Brennan F, McAteer S, Shepherd T, Strachan NJC, Holden NJ.

Appl Environ Microbiol. 2019 May 16;85(11). pii: e00123-19. doi: 10.1128/AEM.00123-19. Print 2019 Jun 1.

PMID:
30902860
3.

Escherichia coli O157:H7 transcriptome datasets for comparison of RNA-seq and microarray platforms.

Grabowiecka E, Martin D, Crozier L, Holden N.

Data Brief. 2018 Nov 30;22:126-131. doi: 10.1016/j.dib.2018.11.136. eCollection 2019 Feb.

4.

Gravitational allocation on the sphere.

Holden N, Peres Y, Zhai A.

Proc Natl Acad Sci U S A. 2018 Sep 25;115(39):9666-9671. doi: 10.1073/pnas.1720804115. Epub 2018 Sep 7.

5.

You Are What You Can Find to Eat: Bacterial Metabolism in the Rhizosphere.

Holden N.

Curr Issues Mol Biol. 2019;30:1-16. doi: 10.21775/cimb.030.001. Epub 2018 Aug 2. Review.

PMID:
30070648
6.

The environmental impact of dairy production on poorly drained soils under future climate scenarios for Ireland.

Sharma P, Humphreys J, Holden NM.

J Environ Manage. 2018 Oct 1;223:625-632. doi: 10.1016/j.jenvman.2018.06.074. Epub 2018 Jun 30.

PMID:
29975889
7.

Erratum: Patchy promiscuity: machine learning applied to predict the host specificity of Salmonella enterica and Escherichia coli.

Lupolova N, Dallman TJ, Holden NJ, Gally DL.

Microb Genom. 2018 Jun;4(6). doi: 10.1099/mgen.0.000193. Epub 2018 Jun 6. No abstract available.

8.

Discovery of Highly Isoform Selective Orally Bioavailable Phosphoinositide 3-Kinase (PI3K)-γ Inhibitors.

Pemberton N, Mogemark M, Arlbrandt S, Bold P, Cox RJ, Gardelli C, Holden NS, Karabelas K, Karlsson J, Lever S, Li X, Lindmark H, Norberg M, Perry MWD, Petersen J, Rodrigo Blomqvist S, Thomas M, Tyrchan C, Westin Eriksson A, Zlatoidsky P, Öster L.

J Med Chem. 2018 Jun 28;61(12):5435-5441. doi: 10.1021/acs.jmedchem.8b00447. Epub 2018 Jun 18.

PMID:
29852070
9.

Environmental impacts of alternative agricultural uses of poorly drained farm land in Ireland.

Sharma P, Humphreys J, Holden NM.

Sci Total Environ. 2018 Oct 1;637-638:120-131. doi: 10.1016/j.scitotenv.2018.04.315. Epub 2018 May 8.

PMID:
29747116
10.

Pulmonary Rehabilitation, Exercise, and Exacerbations of COPD: Known Clinical Efficacy and the Unknown Mechanisms.

Jenkins AR, Holden NS, Jones AW.

Chest. 2018 May;153(5):1281-1282. doi: 10.1016/j.chest.2018.01.054. No abstract available.

PMID:
29731043
11.

Biochar, compost and biochar-compost blend as options to recover nutrients and sequester carbon.

Oldfield TL, Sikirica N, Mondini C, López G, Kuikman PJ, Holden NM.

J Environ Manage. 2018 Jul 15;218:465-476. doi: 10.1016/j.jenvman.2018.04.061. Epub 2018 Apr 27.

PMID:
29709815
12.

Antipsychotic drugs versus cognitive behavioural therapy versus a combination of both in people with psychosis: a randomised controlled pilot and feasibility study.

Morrison AP, Law H, Carter L, Sellers R, Emsley R, Pyle M, French P, Shiers D, Yung AR, Murphy EK, Holden N, Steele A, Bowe SE, Palmier-Claus J, Brooks V, Byrne R, Davies L, Haddad PM.

Lancet Psychiatry. 2018 May;5(5):411-423. doi: 10.1016/S2215-0366(18)30096-8. Epub 2018 Apr 5. Erratum in: Lancet Psychiatry. 2019 Jul;6(7):e16.

13.

Quantification and colonisation dynamics of Escherichia coli O157:H7 inoculation of microgreens species and plant growth substrates.

Wright KM, Holden NJ.

Int J Food Microbiol. 2018 May 20;273:1-10. doi: 10.1016/j.ijfoodmicro.2018.02.025. Epub 2018 Mar 8.

PMID:
29554556
14.

Efficacy of supervised maintenance exercise following pulmonary rehabilitation on health care use: a systematic review and meta-analysis.

Jenkins AR, Gowler H, Curtis F, Holden NS, Bridle C, Jones AW.

Int J Chron Obstruct Pulmon Dis. 2018 Jan 10;13:257-273. doi: 10.2147/COPD.S150650. eCollection 2018. Review.

15.

Patchy promiscuity: machine learning applied to predict the host specificity of Salmonella enterica and Escherichia coli.

Lupolova N, Dallman TJ, Holden NJ, Gally DL.

Microb Genom. 2017 Oct 3;3(10):e000135. doi: 10.1099/mgen.0.000135. eCollection 2017 Oct. Erratum in: Microb Genom. 2018 Jun;4(6):.

16.

Water footprinting of pasture-based farms; beef and sheep.

Murphy E, Curran TP, Holden NM, O'Brien D, Upton J.

Animal. 2018 May;12(5):1068-1076. doi: 10.1017/S1751731117002865. Epub 2017 Nov 6.

PMID:
29103393
17.

Bridging environmental and financial cost of dairy production: A case study of Irish agricultural policy.

Chen W, Holden NM.

Sci Total Environ. 2018 Feb 15;615:597-607. doi: 10.1016/j.scitotenv.2017.09.310. Epub 2017 Oct 6.

PMID:
28988096
18.

Evaluation of allocation methods for calculation of carbon footprint of grass-based dairy production.

Rice P, O'Brien D, Shalloo L, Holden NM.

J Environ Manage. 2017 Nov 1;202(Pt 1):311-319. doi: 10.1016/j.jenvman.2017.06.071.

PMID:
28750283
19.

Design and Synthesis of Soluble and Cell-Permeable PI3Kδ Inhibitors for Long-Acting Inhaled Administration.

Perry MWD, Björhall K, Bonn B, Carlsson J, Chen Y, Eriksson A, Fredlund L, Hao H, Holden NS, Karabelas K, Lindmark H, Liu F, Pemberton N, Petersen J, Rodrigo Blomqvist S, Smith RW, Svensson T, Terstiege I, Tyrchan C, Yang W, Zhao S, Öster L.

J Med Chem. 2017 Jun 22;60(12):5057-5071. doi: 10.1021/acs.jmedchem.7b00401. Epub 2017 Jun 7.

PMID:
28520415
20.

Detecting peatland drains with Object Based Image Analysis and Geoeye-1 imagery.

Connolly J, Holden NM.

Carbon Balance Manag. 2017 Dec;12(1):7. doi: 10.1186/s13021-017-0075-z. Epub 2017 Mar 9.

21.

Human Rhinovirus Infection of Epithelial Cells Modulates Airway Smooth Muscle Migration.

Shariff S, Shelfoon C, Holden NS, Traves SL, Wiehler S, Kooi C, Proud D, Leigh R.

Am J Respir Cell Mol Biol. 2017 Jun;56(6):796-803. doi: 10.1165/rcmb.2016-0252OC.

PMID:
28257236
22.

Differences in internalization and growth of Escherichia coli O157:H7 within the apoplast of edible plants, spinach and lettuce, compared with the model species Nicotiana benthamiana.

Wright KM, Crozier L, Marshall J, Merget B, Holmes A, Holden NJ.

Microb Biotechnol. 2017 May;10(3):555-569. doi: 10.1111/1751-7915.12596. Epub 2017 Feb 7.

23.

Alternate thermoregulation and functional binding of Escherichia coli type 1 fimbriae in environmental and animal isolates.

Marshall J, Rossez Y, Mainda G, Gally DL, Daniell TJ, Holden NJ.

FEMS Microbiol Lett. 2016 Nov;363(22). pii: fnw251. Epub 2016 Nov 2.

24.

Corrigendum: Whole-Transcriptome Analysis of Verocytotoxigenic Escherichia coli O157:H7 (Sakai) Suggests Plant-Species-Specific Metabolic Responses on Exposure to Spinach and Lettuce Extracts.

Crozier L, Hedley PE, Morris J, Wagstaff C, Andrews SC, Toth I, Jackson RW, Holden NJ.

Front Microbiol. 2016 Sep 21;7:1506. doi: 10.3389/fmicb.2016.01506. eCollection 2016.

25.

An environmental analysis of options for utilising wasted food and food residue.

Oldfield TL, White E, Holden NM.

J Environ Manage. 2016 Dec 1;183(Pt 3):826-835. doi: 10.1016/j.jenvman.2016.09.035. Epub 2016 Sep 19.

PMID:
27658656
26.

Monitoring of freshwater toxins in European environmental waters by using novel multi-detection methods.

Rodriguez I, Fraga M, Alfonso A, Guillebault D, Medlin L, Baudart J, Jacob P, Helmi K, Meyer T, Breitenbach U, Holden NM, Boots B, Spurio R, Cimarelli L, Mancini L, Marcheggiani S, Albay M, Akcaalan R, Köker L, Botana LM.

Environ Toxicol Chem. 2017 Mar;36(3):645-654. doi: 10.1002/etc.3577. Epub 2016 Sep 2.

PMID:
27505279
27.

Whole-Transcriptome Analysis of Verocytotoxigenic Escherichia coli O157:H7 (Sakai) Suggests Plant-Species-Specific Metabolic Responses on Exposure to Spinach and Lettuce Extracts.

Crozier L, Hedley PE, Morris J, Wagstaff C, Andrews SC, Toth I, Jackson RW, Holden NJ.

Front Microbiol. 2016 Jul 12;7:1088. doi: 10.3389/fmicb.2016.01088. eCollection 2016. Erratum in: Front Microbiol. 2016;7:1506.

28.

Emotional response to a therapeutic technique: The social Broad Minded Affective Coping.

Holden N, Kelly J, Welford M, Taylor PJ.

Psychol Psychother. 2017 Mar;90(1):55-69. doi: 10.1111/papt.12095. Epub 2016 Apr 20.

29.

Validation of the use of exogenous gonadotropins (PG600) to increase the efficiency of gilt development programs without affecting lifetime productivity in the breeding herd.

Patterson J, Triemert E, Gustafson B, Werner T, Holden N, Pinilla JC, Foxcroft G.

J Anim Sci. 2016 Feb;94(2):805-15. doi: 10.2527/jas.2015-9705.

PMID:
27065151
30.

The effect of lameness on the environmental performance of milk production by rotational grazing.

Chen W, White E, Holden NM.

J Environ Manage. 2016 May 1;172:143-50. doi: 10.1016/j.jenvman.2016.02.030. Epub 2016 Mar 1.

PMID:
26934643
32.

Editorial on plants as alternative hosts for human and animal pathogens.

Holden NJ, Jackson RW, Schikora A.

Front Microbiol. 2015 Apr 30;6:397. doi: 10.3389/fmicb.2015.00397. eCollection 2015. No abstract available.

33.

Soil organic carbon across scales.

O'Rourke SM, Angers DA, Holden NM, McBratney AB.

Glob Chang Biol. 2015 Oct;21(10):3561-74. doi: 10.1111/gcb.12959. Epub 2015 Jun 30. Review.

PMID:
25918852
34.

Bacterial flagella: twist and stick, or dodge across the kingdoms.

Rossez Y, Wolfson EB, Holmes A, Gally DL, Holden NJ.

PLoS Pathog. 2015 Jan 15;11(1):e1004483. doi: 10.1371/journal.ppat.1004483. eCollection 2015 Jan. Review.

35.

Escherichia coli common pilus (ECP) targets arabinosyl residues in plant cell walls to mediate adhesion to fresh produce plants.

Rossez Y, Holmes A, Lodberg-Pedersen H, Birse L, Marshall J, Willats WG, Toth IK, Holden NJ.

J Biol Chem. 2014 Dec 5;289(49):34349-65. doi: 10.1074/jbc.M114.587717. Epub 2014 Oct 15.

36.

An optimized method for the extraction of bacterial mRNA from plant roots infected with Escherichia coli O157:H7.

Holmes A, Birse L, Jackson RW, Holden NJ.

Front Microbiol. 2014 Jun 10;5:286. doi: 10.3389/fmicb.2014.00286. eCollection 2014.

37.
38.

Induction of regulator of G-protein signaling 2 expression by long-acting β2-adrenoceptor agonists and glucocorticoids in human airway epithelial cells.

Holden NS, George T, Rider CF, Chandrasekhar A, Shah S, Kaur M, Johnson M, Siderovski DP, Leigh R, Giembycz MA, Newton R.

J Pharmacol Exp Ther. 2014 Jan;348(1):12-24. doi: 10.1124/jpet.113.204586. Epub 2013 Oct 25.

PMID:
24163441
39.

Prevalence and diversity of Escherichia coli isolated from a barley trial supplemented with bulky organic soil amendments: green compost and bovine slurry.

Holden NJ, Wright F, Mackenzie K, Marshall J, Mitchell S, Mahajan A, Wheatley R, Daniell TJ.

Lett Appl Microbiol. 2014 Mar;58(3):205-12. doi: 10.1111/lam.12180. Epub 2013 Nov 14.

40.

Flagella interact with ionic plant lipids to mediate adherence of pathogenic Escherichia coli to fresh produce plants.

Rossez Y, Holmes A, Wolfson EB, Gally DL, Mahajan A, Pedersen HL, Willats WG, Toth IK, Holden NJ.

Environ Microbiol. 2014 Jul;16(7):2181-95. doi: 10.1111/1462-2920.12315. Epub 2013 Nov 12.

PMID:
24148193
41.

A review of nitrous oxide mitigation by farm nitrogen management in temperate grassland-based agriculture.

Li D, Watson CJ, Yan MJ, Lalor S, Rafique R, Hyde B, Lanigan G, Richards KG, Holden NM, Humphreys J.

J Environ Manage. 2013 Oct 15;128:893-903. doi: 10.1016/j.jenvman.2013.06.026. Epub 2013 Jul 20. Review.

PMID:
23880433
42.

Comparison of pesticide leaching potential to groundwater under EU FOCUS and site specific conditions.

Labite H, Holden NM, Richards KG, Kramers G, Premrov A, Coxon CE, Cummins E.

Sci Total Environ. 2013 Oct 1;463-464:432-41. doi: 10.1016/j.scitotenv.2013.06.050. Epub 2013 Jul 2.

PMID:
23831789
43.

Life cycle assessment of milk production from commercial dairy farms: the influence of management tactics.

Yan MJ, Humphreys J, Holden NM.

J Dairy Sci. 2013 Jul;96(7):4112-24. doi: 10.3168/jds.2012-6139. Epub 2013 May 6.

44.

The endophytic lifestyle of Escherichia coli O157:H7: quantification and internal localization in roots.

Wright KM, Chapman S, McGeachy K, Humphris S, Campbell E, Toth IK, Holden NJ.

Phytopathology. 2013 Apr;103(4):333-40. doi: 10.1094/PHYTO-08-12-0209-FI.

45.

The carbon footprint of pasture-based milk production: can white clover make a difference?

Yan MJ, Humphreys J, Holden NM.

J Dairy Sci. 2013 Feb;96(2):857-65. doi: 10.3168/jds.2012-5904. Epub 2012 Nov 29.

46.

Transparent soil for imaging the rhizosphere.

Downie H, Holden N, Otten W, Spiers AJ, Valentine TA, Dupuy LX.

PLoS One. 2012;7(9):e44276. doi: 10.1371/journal.pone.0044276. Epub 2012 Sep 11.

47.

Phenoxyalkanoic acid herbicide sorption and the effect of co-application in a Haplic Cambisol with contrasting management.

Piwowarczyk AA, Holden NM.

Chemosphere. 2013 Jan;90(2):535-41. doi: 10.1016/j.chemosphere.2012.08.023. Epub 2012 Sep 6.

PMID:
22959720
48.

Climate Change and Defense against Pathogens in Plants.

Newton AC, Torrance L, Holden N, Toth IK, Cooke DE, Blok V, Gilroy EM.

Adv Appl Microbiol. 2012;81:89-132. doi: 10.1016/B978-0-12-394382-8.00003-4. Review.

PMID:
22958528
49.

Decommissioning of the High Flux Beam Reactor at Brookhaven National Laboratory.

Hu JP, Reciniello RN, Holden NE.

Health Phys. 2012 Aug;103(2 Suppl 2):S151-60. doi: 10.1097/HP.0b013e318259501f.

PMID:
22739969
50.

Alignment-free design of highly discriminatory diagnostic primer sets for Escherichia coli O104:H4 outbreak strains.

Pritchard L, Holden NJ, Bielaszewska M, Karch H, Toth IK.

PLoS One. 2012;7(4):e34498. doi: 10.1371/journal.pone.0034498. Epub 2012 Apr 5.

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