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Maternal Smoking During Pregnancy Induces Persistent Epigenetic Changes Into Adolescence, Independent of Postnatal Smoke Exposure and Is Associated With Cardiometabolic Risk.

Rauschert S, Melton PE, Burdge G, Craig JM, Godfrey KM, Holbrook JD, Lillycrop K, Mori TA, Beilin LJ, Oddy WH, Pennell C, Huang RC.

Front Genet. 2019 Sep 5;10:770. doi: 10.3389/fgene.2019.00770. eCollection 2019.


In Epigenomic Studies, Including Cell-Type Adjustments in Regression Models Can Introduce Multicollinearity, Resulting in Apparent Reversal of Direction of Association.

Barton SJ, Melton PE, Titcombe P, Murray R, Rauschert S, Lillycrop KA, Huang RC, Holbrook JD, Godfrey KM.

Front Genet. 2019 Sep 10;10:816. doi: 10.3389/fgene.2019.00816. eCollection 2019.


Neonatal amygdalae and hippocampi are influenced by genotype and prenatal environment, and reflected in the neonatal DNA methylome.

Ong ML, Tuan TA, Poh J, Teh AL, Chen L, Pan H, MacIsaac JL, Kobor MS, Chong YS, Kwek K, Saw SM, Godfrey KM, Gluckman PD, Fortier MV, Karnani N, Meaney MJ, Qiu A, Holbrook JD.

Genes Brain Behav. 2019 Sep;18(7):e12576. doi: 10.1111/gbb.12576. Epub 2019 May 15.


Epigenetic Age Acceleration in Adolescence Associates With BMI, Inflammation, and Risk Score for Middle Age Cardiovascular Disease.

Huang RC, Lillycrop KA, Beilin LJ, Godfrey KM, Anderson D, Mori TA, Rauschert S, Craig JM, Oddy WH, Ayonrinde OT, Pennell CE, Holbrook JD, Melton PE.

J Clin Endocrinol Metab. 2019 Jul 1;104(7):3012-3024. doi: 10.1210/jc.2018-02076.


Functional responses in habitat selection: clarifying hypotheses and interpretations.

Holbrook JD, Olson LE, DeCesare NJ, Hebblewhite M, Squires JR, Steenweg R.

Ecol Appl. 2019 Apr;29(3):e01852. doi: 10.1002/eap.1852. Epub 2019 Feb 26.


Differential SLC6A4 methylation: a predictive epigenetic marker of adiposity from birth to adulthood.

Lillycrop KA, Garratt ES, Titcombe P, Melton PE, Murray RJS, Barton SJ, Clarke-Harris R, Costello PM, Holbrook JD, Hopkins JC, Childs CE, Paras-Chavez C, Calder PC, Mori TA, Beilin L, Burdge GC, Gluckman PD, Inskip HM, Harvey NC, Hanson MA, Huang RC, Cooper C; EpiGen Consortium, Godfrey KM.

Int J Obes (Lond). 2019 May;43(5):974-988. doi: 10.1038/s41366-018-0254-3. Epub 2019 Jan 8.


The early care environment and DNA methylome variation in childhood.

Garg E, Chen L, Nguyen TTT, Pokhvisneva I, Chen LM, Unternaehrer E, MacIsaac JL, McEwen LM, Mah SM, Gaudreau H, Levitan R, Moss E, Sokolowski MB, Kennedy JL, Steiner MS, Meaney MJ, Holbrook JD, Silveira PP, Karnani N, Kobor MS, O'Donnell KJ; Mavan Study Team.

Dev Psychopathol. 2018 Aug;30(3):891-903. doi: 10.1017/S0954579418000627.


Forest structure provides the income for reproductive success in a southern population of Canada lynx.

Kosterman MK, Squires JR, Holbrook JD, Pletscher DH, Hebblewhite M.

Ecol Appl. 2018 Jun;28(4):1032-1043. doi: 10.1002/eap.1707. Epub 2018 May 7.


DNA methylome variation in a perinatal nurse-visitation program that reduces child maltreatment: a 27-year follow-up.

O'Donnell KJ, Chen L, MacIsaac JL, McEwen LM, Nguyen T, Beckmann K, Zhu Y, Chen LM, Brooks-Gunn J, Goldman D, Grigorenko EL, Leckman JF, Diorio J, Karnani N, Olds DL, Holbrook JD, Kobor MS, Meaney MJ.

Transl Psychiatry. 2018 Jan 10;8(1):15. doi: 10.1038/s41398-017-0063-9.


Choice of surrogate tissue influences neonatal EWAS findings.

Lin X, Teh AL, Chen L, Lim IY, Tan PF, MacIsaac JL, Morin AM, Yap F, Tan KH, Saw SM, Lee YS, Holbrook JD, Godfrey KM, Meaney MJ, Kobor MS, Chong YS, Gluckman PD, Karnani N.

BMC Med. 2017 Dec 5;15(1):211. doi: 10.1186/s12916-017-0970-x.


Vitamin B12 supplementation influences methylation of genes associated with Type 2 diabetes and its intermediate traits.

Yadav DK, Shrestha S, Lillycrop KA, Joglekar CV, Pan H, Holbrook JD, Fall CH, Yajnik CS, Chandak GR.

Epigenomics. 2018 Jan;10(1):71-90. doi: 10.2217/epi-2017-0102. Epub 2017 Nov 14.


Examining spatial patterns of selection and use for an altered predator guild.

Mumma MA, Holbrook JD, Rayl ND, Zieminski CJ, Fuller TK, Organ JF, Mahoney SP, Waits LP.

Oecologia. 2017 Dec;185(4):725-735. doi: 10.1007/s00442-017-3971-8. Epub 2017 Oct 16.


Does the maternal vaginal microbiota play a role in seeding the microbiota of neonatal gut and nose?

Sakwinska O, Foata F, Berger B, Brüssow H, Combremont S, Mercenier A, Dogra S, Soh SE, Yen JCK, Heong GYS, Lee YS, Yap F, Meaney MJ, Chong YS, Godfrey KM, Holbrook JD.

Benef Microbes. 2017 Oct 13;8(5):763-778. doi: 10.3920/BM2017.0064. Epub 2017 Oct 12.


Ratio of Klebsiella/Bifidobacterium in early life correlates with later development of paediatric allergy.

Low JSY, Soh SE, Lee YK, Kwek KYC, Holbrook JD, Van der Beek EM, Shek LP, Goh AEN, Teoh OH, Godfrey KM, Chong YS, Knol J, Lay C.

Benef Microbes. 2017 Oct 13;8(5):681-695. doi: 10.3920/BM2017.0020. Epub 2017 Oct 12.


The role of ethnicity and socioeconomic status in Southeast Asian mothers' parenting sensitivity.

Heng J, Quan J, Sim LW, Sanmugam S, Broekman B, Bureau JF, Meaney MJ, Holbrook JD, Rifkin-Graboi A.

Attach Hum Dev. 2018 Feb;20(1):24-42. doi: 10.1080/14616734.2017.1365912. Epub 2017 Aug 25.


Is cellular heterogeneity merely a confounder to be removed from epigenome-wide association studies?

Holbrook JD, Huang RC, Barton SJ, Saffery R, Lillycrop KA.

Epigenomics. 2017 Aug;9(8):1143-1150. doi: 10.2217/epi-2017-0032. Epub 2017 Jul 27.


The influence of CHRNA4, COMT, and maternal sensitivity on orienting and executive attention in 6-month-old infants.

Quan J, Ong ML, Bureau JF, Sim LW, Sanmugam S, Abdul Malik AB, Wong E, Wong J, Chong YS, Saw SM, Kwek K, Qiu A, Holbrook JD, Rifkin-Graboi A; GUSTO Study Group.

Brain Cogn. 2017 Aug;116:17-28. doi: 10.1016/j.bandc.2017.05.002. Epub 2017 Jun 3.


ANRIL Promoter DNA Methylation: A Perinatal Marker for Later Adiposity.

Lillycrop K, Murray R, Cheong C, Teh AL, Clarke-Harris R, Barton S, Costello P, Garratt E, Cook E, Titcombe P, Shunmuganathan B, Liew SJ, Chua YC, Lin X, Wu Y, Burdge GC, Cooper C, Inskip HM, Karnani N, Hopkins JC, Childs CE, Chavez CP, Calder PC, Yap F, Lee YS, Chong YS, Melton PE, Beilin L, Huang RC, Gluckman PD, Harvey N, Hanson MA, Holbrook JD; EpiGen Consortium, Godfrey KM.

EBioMedicine. 2017 May;19:60-72. doi: 10.1016/j.ebiom.2017.03.037. Epub 2017 Apr 26.


Perinatal DNA Methylation at CDKN2A Is Associated With Offspring Bone Mass: Findings From the Southampton Women's Survey.

Curtis EM, Murray R, Titcombe P, Cook E, Clarke-Harris R, Costello P, Garratt E, Holbrook JD, Barton S, Inskip H, Godfrey KM, Bell CG, Cooper C, Lillycrop KA, Harvey NC.

J Bone Miner Res. 2017 Oct;32(10):2030-2040. doi: 10.1002/jbmr.3153. Epub 2017 May 22.


Predicting functional decline and survival in amyotrophic lateral sclerosis.

Ong ML, Tan PF, Holbrook JD.

PLoS One. 2017 Apr 13;12(4):e0174925. doi: 10.1371/journal.pone.0174925. eCollection 2017.


Effects of Antenatal Maternal Depressive Symptoms and Socio-Economic Status on Neonatal Brain Development are Modulated by Genetic Risk.

Qiu A, Shen M, Buss C, Chong YS, Kwek K, Saw SM, Gluckman PD, Wadhwa PD, Entringer S, Styner M, Karnani N, Heim CM, O'Donnell KJ, Holbrook JD, Fortier MV, Meaney MJ; the GUSTO study group.

Cereb Cortex. 2017 May 1;27(5):3080-3092. doi: 10.1093/cercor/bhx065.


Developmental pathways to adiposity begin before birth and are influenced by genotype, prenatal environment and epigenome.

Lin X, Lim IY, Wu Y, Teh AL, Chen L, Aris IM, Soh SE, Tint MT, MacIsaac JL, Morin AM, Yap F, Tan KH, Saw SM, Kobor MS, Meaney MJ, Godfrey KM, Chong YS, Holbrook JD, Lee YS, Gluckman PD, Karnani N; GUSTO study group.

BMC Med. 2017 Mar 7;15(1):50. doi: 10.1186/s12916-017-0800-1.


Catching diabetes.

Holbrook JD.

Epigenomics. 2016 Sep;8(9):1173-7. doi: 10.2217/epi-2016-0079. Epub 2016 Aug 16. No abstract available.


How to make DNA methylome wide association studies more powerful.

Lin X, Barton S, Holbrook JD.

Epigenomics. 2016 Aug;8(8):1117-29. doi: 10.2217/epi-2016-0017. Epub 2016 Apr 7. Review.


Does diet interact with genotype to cause epigenetic modification of angiogenesis genes, on the trajectory to obesity?

Holbrook JD.

Epigenomics. 2016 Jun;8(6):741-5. doi: 10.2217/epi-2016-0023. Epub 2016 Mar 24. No abstract available.


Low birth weight associates with hippocampal gene expression.

Buschdorf JP, Ong ML, Ong SX, MacIsaac JL, Chng K, Kobor MS, Meaney MJ, Holbrook JD.

Neuroscience. 2016 Mar 24;318:190-205. doi: 10.1016/j.neuroscience.2016.01.013. Epub 2016 Jan 12.


Comparison of Methyl-capture Sequencing vs. Infinium 450K methylation array for methylome analysis in clinical samples.

Teh AL, Pan H, Lin X, Lim YI, Patro CP, Cheong CY, Gong M, MacIsaac JL, Kwoh CK, Meaney MJ, Kobor MS, Chong YS, Gluckman PD, Holbrook JD, Karnani N.

Epigenetics. 2016;11(1):36-48. doi: 10.1080/15592294.2015.1132136. Epub 2016 Jan 19.


MC3R gene polymorphisms are associated with early childhood adiposity gain and infant appetite in an Asian population.

Aris IM, Tint MT, Teh AL, Holbrook JD, Quah PL, Chong MF, Lin X, Soh SE, Saw SM, Kwek K, Godfrey KM, Gluckman PD, Chong YS, Lek N, Yap F, Lee YS.

Pediatr Obes. 2016 Dec;11(6):450-458. doi: 10.1111/ijpo.12086. Epub 2015 Dec 11.


Genome-wide methylation analysis identifies differentially methylated CpG loci associated with severe obesity in childhood.

Huang RC, Garratt ES, Pan H, Wu Y, Davis EA, Barton SJ, Burdge GC, Godfrey KM, Holbrook JD, Lillycrop KA.

Epigenetics. 2015;10(11):995-1005. doi: 10.1080/15592294.2015.1080411.


ST3GAL1-Associated Transcriptomic Program in Glioblastoma Tumor Growth, Invasion, and Prognosis.

Chong YK, Sandanaraj E, Koh LW, Thangaveloo M, Tan MS, Koh GR, Toh TB, Lim GG, Holbrook JD, Kon OL, Nadarajah M, Ng I, Ng WH, Tan NS, Lim KL, Tang C, Ang BT.

J Natl Cancer Inst. 2015 Nov 7;108(2). pii: djv326. doi: 10.1093/jnci/djv326. Print 2016 Feb.


Occupancy of red-naped sapsuckers in a coniferous forest: using LiDAR to understand effects of vegetation structure and disturbance.

Holbrook JD, Vierling KT, Vierling LA, Hudak AT, Adam P.

Ecol Evol. 2015 Nov 2;5(22):5383-5393. doi: 10.1002/ece3.1768. eCollection 2015 Nov.


Rate of establishing the gut microbiota in infancy has consequences for future health.

Dogra S, Sakwinska O, Soh SE, Ngom-Bru C, Brück WM, Berger B, Brüssow H, Karnani N, Lee YS, Yap F, Chong YS, Godfrey KM, Holbrook JD.

Gut Microbes. 2015;6(5):321-5. doi: 10.1080/19490976.2015.1078051. Epub 2015 Aug 20.


Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.

Kato N, Loh M, Takeuchi F, Verweij N, Wang X, Zhang W, Kelly TN, Saleheen D, Lehne B, Leach IM, Drong AW, Abbott J, Wahl S, Tan ST, Scott WR, Campanella G, Chadeau-Hyam M, Afzal U, Ahluwalia TS, Bonder MJ, Chen P, Dehghan A, Edwards TL, Esko T, Go MJ, Harris SE, Hartiala J, Kasela S, Kasturiratne A, Khor CC, Kleber ME, Li H, Yu Mok Z, Nakatochi M, Sapari NS, Saxena R, Stewart AFR, Stolk L, Tabara Y, Teh AL, Wu Y, Wu JY, Zhang Y, Aits I, Da Silva Couto Alves A, Das S, Dorajoo R, Hopewell JC, Kim YK, Koivula RW, Luan J, Lyytikäinen LP, Nguyen QN, Pereira MA, Postmus I, Raitakari OT, Scannell Bryan M, Scott RA, Sorice R, Tragante V, Traglia M, White J, Yamamoto K, Zhang Y, Adair LS, Ahmed A, Akiyama K, Asif R, Aung T, Barroso I, Bjonnes A, Braun TR, Cai H, Chang LC, Chen CH, Cheng CY, Chong YS, Collins R, Courtney R, Davies G, Delgado G, Do LD, Doevendans PA, Gansevoort RT, Gao YT, Grammer TB, Grarup N, Grewal J, Gu D, Wander GS, Hartikainen AL, Hazen SL, He J, Heng CK, Hixson JE, Hofman A, Hsu C, Huang W, Husemoen LLN, Hwang JY, Ichihara S, Igase M, Isono M, Justesen JM, Katsuya T, Kibriya MG, Kim YJ, Kishimoto M, Koh WP, Kohara K, Kumari M, Kwek K, Lee NR, Lee J, Liao J, Lieb W, Liewald DCM, Matsubara T, Matsushita Y, Meitinger T, Mihailov E, Milani L, Mills R, Mononen N, Müller-Nurasyid M, Nabika T, Nakashima E, Ng HK, Nikus K, Nutile T, Ohkubo T, Ohnaka K, Parish S, Paternoster L, Peng H, Peters A, Pham ST, Pinidiyapathirage MJ, Rahman M, Rakugi H, Rolandsson O, Ann Rozario M, Ruggiero D, Sala CF, Sarju R, Shimokawa K, Snieder H, Sparsø T, Spiering W, Starr JM, Stott DJ, Stram DO, Sugiyama T, Szymczak S, Tang WHW, Tong L, Trompet S, Turjanmaa V, Ueshima H, Uitterlinden AG, Umemura S, Vaarasmaki M, van Dam RM, van Gilst WH, van Veldhuisen DJ, Viikari JS, Waldenberger M, Wang Y, Wang A, Wilson R, Wong TY, Xiang YB, Yamaguchi S, Ye X, Young RD, Young TL, Yuan JM, Zhou X, Asselbergs FW, Ciullo M, Clarke R, Deloukas P, Franke A, Franks PW, Franks S, Friedlander Y, Gross MD, Guo Z, Hansen T, Jarvelin MR, Jørgensen T, Jukema JW, Kähönen M, Kajio H, Kivimaki M, Lee JY, Lehtimäki T, Linneberg A, Miki T, Pedersen O, Samani NJ, Sørensen TIA, Takayanagi R, Toniolo D; BIOS-consortium; CARDIo GRAMplusCD; LifeLines Cohort Study; InterAct Consortium, Ahsan H, Allayee H, Chen YT, Danesh J, Deary IJ, Franco OH, Franke L, Heijman BT, Holbrook JD, Isaacs A, Kim BJ, Lin X, Liu J, März W, Metspalu A, Mohlke KL, Sanghera DK, Shu XO, van Meurs JBJ, Vithana E, Wickremasinghe AR, Wijmenga C, Wolffenbuttel BHW, Yokota M, Zheng W, Zhu D, Vineis P, Kyrtopoulos SA, Kleinjans JCS, McCarthy MI, Soong R, Gieger C, Scott J, Teo YY, He J, Elliott P, Tai ES, van der Harst P, Kooner JS, Chambers JC.

Nat Genet. 2015 Nov;47(11):1282-1293. doi: 10.1038/ng.3405. Epub 2015 Sep 21.


Ethnic Differences in Effects of Maternal Pre-Pregnancy and Pregnancy Adiposity on Offspring Size and Adiposity.

Lin X, Aris IM, Tint MT, Soh SE, Godfrey KM, Yeo GS, Kwek K, Chan JK, Gluckman PD, Chong YS, Yap F, Holbrook JD, Lee YS.

J Clin Endocrinol Metab. 2015 Oct;100(10):3641-50. doi: 10.1210/jc.2015-1728. Epub 2015 Jul 22.


HIF3A association with adiposity: the story begins before birth.

Pan H, Lin X, Wu Y, Chen L, Teh AL, Soh SE, Lee YS, Tint MT, MacIsaac JL, Morin AM, Tan KH, Yap F, Saw SM, Kobor MS, Meaney MJ, Godfrey KM, Chong YS, Gluckman PD, Karnani N, Holbrook JD; GUSTO Study Group.

Epigenomics. 2015;7(6):937-50. doi: 10.2217/epi.15.45. Epub 2015 May 26.


ACSL1 Is Associated With Fetal Programming of Insulin Sensitivity and Cellular Lipid Content.

Joseph R, Poschmann J, Sukarieh R, Too PG, Julien SG, Xu F, Teh AL, Holbrook JD, Ng KL, Chong YS, Gluckman PD, Prabhakar S, Stünkel W.

Mol Endocrinol. 2015 Jun;29(6):909-20. doi: 10.1210/me.2015-1020. Epub 2015 Apr 27.


Association between perinatal methylation of the neuronal differentiation regulator HES1 and later childhood neurocognitive function and behaviour.

Lillycrop KA, Costello PM, Teh AL, Murray RJ, Clarke-Harris R, Barton SJ, Garratt ES, Ngo S, Sheppard AM, Wong J, Dogra S, Burdge GC, Cooper C, Inskip HM, Gale CR, Gluckman PD, Harvey NC, Chong YS, Yap F, Meaney MJ, Rifkin-Graboi A, Holbrook JD; Epigen Global Research Consortium, Godfrey KM.

Int J Epidemiol. 2015 Aug;44(4):1263-76. doi: 10.1093/ije/dyv052. Epub 2015 Apr 22.


Dynamics of infant gut microbiota are influenced by delivery mode and gestational duration and are associated with subsequent adiposity.

Dogra S, Sakwinska O, Soh SE, Ngom-Bru C, Brück WM, Berger B, Brüssow H, Lee YS, Yap F, Chong YS, Godfrey KM, Holbrook JD; GUSTO Study Group.

MBio. 2015 Feb 3;6(1). pii: e02419-14. doi: 10.1128/mBio.02419-14.


Brain-derived neurotrophic factor (BDNF) Val66Met polymorphism influences the association of the methylome with maternal anxiety and neonatal brain volumes.

Chen L, Pan H, Tuan TA, Teh AL, MacIsaac JL, Mah SM, McEwen LM, Li Y, Chen H, Broekman BF, Buschdorf JP, Chong YS, Kwek K, Saw SM, Gluckman PD, Fortier MV, Rifkin-Graboi A, Kobor MS, Qiu A, Meaney MJ, Holbrook JD; Gusto Study Group.

Dev Psychopathol. 2015 Feb;27(1):137-50. doi: 10.1017/S0954579414001357.


An epigenetic escape route.

Holbrook JD.

Trends Genet. 2015 Jan;31(1):2-4. doi: 10.1016/j.tig.2014.09.007. Review.


Maternal prenatal anxiety and child brain-derived neurotrophic factor (BDNF) genotype: effects on internalizing symptoms from 4 to 15 years of age.

O'Donnell KJ, Glover V, Holbrook JD, O'Connor TG.

Dev Psychopathol. 2014 Nov;26(4 Pt 2):1255-66. doi: 10.1017/S095457941400100X.


A new, improved and generalizable approach for the analysis of biological data generated by -omic platforms.

Pleasants AB, Wake GC, Shorten PR, Hassell-Sweatman CZ, McLean CA, Holbrook JD, Gluckman PD, Sheppard AM.

J Dev Orig Health Dis. 2015 Feb;6(1):17-26. doi: 10.1017/S2040174414000476. Epub 2014 Oct 22.


COMT haplotypes modulate associations of antenatal maternal anxiety and neonatal cortical morphology.

Qiu A, Tuan TA, Ong ML, Li Y, Chen H, Rifkin-Graboi A, Broekman BF, Kwek K, Saw SM, Chong YS, Gluckman PD, Fortier MV, Holbrook JD, Meaney MJ.

Am J Psychiatry. 2015 Feb 1;172(2):163-72. doi: 10.1176/appi.ajp.2014.14030313. Epub 2014 Oct 31.


Measuring epigenetics as the mediator of gene/environment interactions in DOHaD.

Ong ML, Lin X, Holbrook JD.

J Dev Orig Health Dis. 2015 Feb;6(1):10-6. doi: 10.1017/S2040174414000506. Epub 2014 Oct 15. Review.


Insights from the Growing Up in Singapore Towards Healthy Outcomes (GUSTO) cohort study.

Soh SE, Chong YS, Kwek K, Saw SM, Meaney MJ, Gluckman PD, Holbrook JD, Godfrey KM; GUSTO Study Group.

Ann Nutr Metab. 2014;64(3-4):218-25. doi: 10.1159/000365023. Epub 2014 Oct 2.


Ethnic differences translate to inadequacy of high-risk screening for gestational diabetes mellitus in an Asian population: a cohort study.

Chong YS, Cai S, Lin H, Soh SE, Lee YS, Leow MK, Chan YH, Chen L, Holbrook JD, Tan KH, Rajadurai VS, Yeo GS, Kramer MS, Saw SM, Gluckman PD, Godfrey KM, Kwek K; GUSTO study group.

BMC Pregnancy Childbirth. 2014 Oct 2;14:345. doi: 10.1186/1471-2393-14-345.


Genetic contribution to postpartum haemorrhage.

Chong YS, Chi C, Holbrook JD.

BMJ. 2014 Aug 27;349:g5285. doi: 10.1136/bmj.g5285. No abstract available.


Molecular pathways reflecting poor intrauterine growth are found in Wharton's jelly-derived mesenchymal stem cells.

Sukarieh R, Joseph R, Leow SC, Li Y, Löffler M, Aris IM, Tan JH, Teh AL, Chen L, Holbrook JD, Ng KL, Lee YS, Chong YS, Summers SA, Gluckman PD, Stünkel W.

Hum Reprod. 2014 Oct 10;29(10):2287-301. doi: 10.1093/humrep/deu209. Epub 2014 Aug 16.


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