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Items: 1 to 20 of 72

1.

A population of proinflammatory T cells coexpresses αβ and γδ T cell receptors in mice and humans.

Edwards SC, Sutton CE, Ladell K, Grant EJ, McLaren JE, Roche F, Dash P, Apiwattanakul N, Awad W, Miners KL, Lalor SJ, Ribot JC, Baik S, Moran B, McGinley A, Pivorunas V, Dowding L, Macoritto M, Paez-Cortez J, Slavin A, Anderson G, Silva-Santos B, Hokamp K, Price DA, Thomas PG, McLoughlin RM, Mills KHG.

J Exp Med. 2020 May 4;217(5). pii: e20190834. doi: 10.1084/jem.20190834.

PMID:
32106283
2.

BOSC 2019, the 20th annual Bioinformatics Open Source Conference.

Harris NL, Cock PJA, Fields CJ, Greshake Tzovaras B, Heuer M, Hokamp K, Munoz-Torres M, Peltzer A, Rieck B, Wiencko H, Yehudi Y.

F1000Res. 2019 Dec 20;8. pii: ISCB Comm J-2132. doi: 10.12688/f1000research.21568.1. eCollection 2019.

3.

Transcriptomic Analysis of Mecp2 Mutant Mice Reveals Differentially Expressed Genes and Altered Mechanisms in Both Blood and Brain.

Sanfeliu A, Hokamp K, Gill M, Tropea D.

Front Psychiatry. 2019 Apr 29;10:278. doi: 10.3389/fpsyt.2019.00278. eCollection 2019.

4.

Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580.

Canals R, Hammarlöf DL, Kröger C, Owen SV, Fong WY, Lacharme-Lora L, Zhu X, Wenner N, Carden SE, Honeycutt J, Monack DM, Kingsley RA, Brownridge P, Chaudhuri RR, Rowe WPM, Predeus AV, Hokamp K, Gordon MA, Hinton JCD.

PLoS Biol. 2019 Jan 15;17(1):e3000059. doi: 10.1371/journal.pbio.3000059. eCollection 2019 Jan.

5.

The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018).

Harris NL, Wiencko H, Chapman B, Cock PJA, Hokamp K, Lapp H, Fields C, Greshake Tzovaras B.

F1000Res. 2018 Aug 17;7. pii: ISCB Comm J-1309. doi: 10.12688/f1000research.15936.1. eCollection 2018.

6.

Circadian clock protein BMAL1 regulates IL-1β in macrophages via NRF2.

Early JO, Menon D, Wyse CA, Cervantes-Silva MP, Zaslona Z, Carroll RG, Palsson-McDermott EM, Angiari S, Ryan DG, Corcoran SE, Timmons G, Geiger SS, Fitzpatrick DJ, O'Connell D, Xavier RJ, Hokamp K, O'Neill LAJ, Curtis AM.

Proc Natl Acad Sci U S A. 2018 Sep 4;115(36):E8460-E8468. doi: 10.1073/pnas.1800431115. Epub 2018 Aug 20.

7.

The impact of common genetic variants in the mitochondrial glycine cleavage system on relevant metabolites.

O'Reilly J, Pangilinan F, Hokamp K, Ueland PM, Brosnan JT, Brosnan ME, Brody LC, Molloy AM.

Mol Genet Metab Rep. 2018 Jun 11;16:20-22. doi: 10.1016/j.ymgmr.2018.05.006. eCollection 2018 Sep.

8.

The primary transcriptome, small RNAs and regulation of antimicrobial resistance in Acinetobacter baumannii ATCC 17978.

Kröger C, MacKenzie KD, Alshabib EY, Kirzinger MWB, Suchan DM, Chao TC, Akulova V, Miranda-CasoLuengo AA, Monzon VA, Conway T, Sivasankaran SK, Hinton JCD, Hokamp K, Cameron ADS.

Nucleic Acids Res. 2018 Oct 12;46(18):9684-9698. doi: 10.1093/nar/gky603.

9.

A Family of Vertebrate-Specific Polycombs Encoded by the LCOR/LCORL Genes Balance PRC2 Subtype Activities.

Conway E, Jerman E, Healy E, Ito S, Holoch D, Oliviero G, Deevy O, Glancy E, Fitzpatrick DJ, Mucha M, Watson A, Rice AM, Chammas P, Huang C, Pratt-Kelly I, Koseki Y, Nakayama M, Ishikura T, Streubel G, Wynne K, Hokamp K, McLysaght A, Ciferri C, Di Croce L, Cagney G, Margueron R, Koseki H, Bracken AP.

Mol Cell. 2018 May 3;70(3):408-421.e8. doi: 10.1016/j.molcel.2018.03.005. Epub 2018 Apr 5.

10.

Role of a single noncoding nucleotide in the evolution of an epidemic African clade of Salmonella.

Hammarlöf DL, Kröger C, Owen SV, Canals R, Lacharme-Lora L, Wenner N, Schager AE, Wells TJ, Henderson IR, Wigley P, Hokamp K, Feasey NA, Gordon MA, Hinton JCD.

Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):E2614-E2623. doi: 10.1073/pnas.1714718115. Epub 2018 Feb 27.

11.

Dysregulated mitogen-activated protein kinase signalling as an oncogenic basis for clear cell sarcoma of the kidney.

Kenny C, McDonagh N, Lazaro A, O'Meara E, Klinger R, O'Connor D, Roche F, Hokamp K, O'Sullivan MJ.

J Pathol. 2018 Mar;244(3):334-345. doi: 10.1002/path.5020. Epub 2018 Jan 23.

PMID:
29243812
12.

The Candida albicans TOR-Activating GTPases Gtr1 and Rhb1 Coregulate Starvation Responses and Biofilm Formation.

Flanagan PR, Liu NN, Fitzpatrick DJ, Hokamp K, Köhler JR, Moran GP.

mSphere. 2017 Nov 15;2(6). pii: e00477-17. doi: 10.1128/mSphere.00477-17. eCollection 2017 Nov-Dec.

13.

The 2017 Bioinformatics Open Source Conference (BOSC).

Harris NL, Cock PJA, Chapman B, Fields CJ, Hokamp K, Lapp H, Munoz-Torres M, Tzovaras BG, Wiencko H.

F1000Res. 2017 Oct 19;6. pii: ISCB Comm J-1858. doi: 10.12688/f1000research.12929.1. eCollection 2017.

14.

CD10-/ALDH- cells are the sole cisplatin-resistant component of a novel ovarian cancer stem cell hierarchy.

Ffrench B, Gasch C, Hokamp K, Spillane C, Blackshields G, Mahgoub TM, Bates M, Kehoe L, Mooney A, Doyle R, Doyle B, O'Donnell D, Gleeson N, Hennessy BT, Stordal B, O'Riain C, Lambkin H, O'Toole S, O'Leary JJ, Gallagher MF.

Cell Death Dis. 2017 Oct 19;8(10):e3128. doi: 10.1038/cddis.2017.379.

15.

A dual-strategy expression screen for candidate connectivity labels in the developing thalamus.

Bibollet-Bahena O, Okafuji T, Hokamp K, Tear G, Mitchell KJ.

PLoS One. 2017 May 30;12(5):e0177977. doi: 10.1371/journal.pone.0177977. eCollection 2017.

16.

Fam60a defines a variant Sin3a-Hdac complex in embryonic stem cells required for self-renewal.

Streubel G, Fitzpatrick DJ, Oliviero G, Scelfo A, Moran B, Das S, Munawar N, Watson A, Wynne K, Negri GL, Dillon ET, Jammula S, Hokamp K, O'Connor DP, Pasini D, Cagney G, Bracken AP.

EMBO J. 2017 Aug 1;36(15):2216-2232. doi: 10.15252/embj.201696307. Epub 2017 May 29.

17.

Distinct histone methylation and transcription profiles are established during the development of cellular quiescence in yeast.

Young CP, Hillyer C, Hokamp K, Fitzpatrick DJ, Konstantinov NK, Welty JS, Ness SA, Werner-Washburne M, Fleming AB, Osley MA.

BMC Genomics. 2017 Jan 26;18(1):107. doi: 10.1186/s12864-017-3509-9.

18.

The 2016 Bioinformatics Open Source Conference (BOSC).

Harris NL, Cock PJ, Chapman B, Fields CJ, Hokamp K, Lapp H, Muñoz-Torres M, Wiencko H.

F1000Res. 2016 Oct 6;5. pii: ISCB Comm J-2464. eCollection 2016.

19.

The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium.

Colgan AM, Kröger C, Diard M, Hardt WD, Puente JL, Sivasankaran SK, Hokamp K, Hinton JC.

PLoS Genet. 2016 Aug 26;12(8):e1006258. doi: 10.1371/journal.pgen.1006258. eCollection 2016 Aug.

20.

microRNA regulatory circuits in a mouse model of inherited retinal degeneration.

Palfi A, Hokamp K, Hauck SM, Vencken S, Millington-Ward S, Chadderton N, Carrigan M, Kortvely E, Greene CM, Kenna PF, Farrar GJ.

Sci Rep. 2016 Aug 16;6:31431. doi: 10.1038/srep31431.

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