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Items: 1 to 50 of 61

1.

Systems-level analysis reveals selective regulation of Aqp2 gene expression by vasopressin.

Sandoval PC, Claxton JS, Lee JW, Saeed F, Hoffert JD, Knepper MA.

Sci Rep. 2016 Oct 11;6:34863. doi: 10.1038/srep34863.

2.

Autophagic degradation of aquaporin-2 is an early event in hypokalemia-induced nephrogenic diabetes insipidus.

Khositseth S, Uawithya P, Somparn P, Charngkaew K, Thippamom N, Hoffert JD, Saeed F, Michael Payne D, Chen SH, Fenton RA, Pisitkun T.

Sci Rep. 2015 Dec 17;5:18311. doi: 10.1038/srep18311.

3.

Peptide Labeling Using Isobaric Tagging Reagents for Quantitative Phosphoproteomics.

Cheng L, Pisitkun T, Knepper MA, Hoffert JD.

Methods Mol Biol. 2016;1355:53-70. doi: 10.1007/978-1-4939-3049-4_4.

4.

Letter to the editor: "Systems biology versus reductionism in cell physiology".

Knepper MA, Raghuram V, Bradford D, Chou CL, Hoffert JD, Pisitkun T.

Am J Physiol Cell Physiol. 2014 Aug 1;307(3):C308-9. doi: 10.1152/ajpcell.00175.2014. No abstract available.

5.

A knowledge base of vasopressin actions in the kidney.

Sanghi A, Zaringhalam M, Corcoran CC, Saeed F, Hoffert JD, Sandoval P, Pisitkun T, Knepper MA.

Am J Physiol Renal Physiol. 2014 Sep 15;307(6):F747-55. doi: 10.1152/ajprenal.00012.2014. Epub 2014 Jul 23.

6.

Exploiting Thread-Level and Instruction-Level Parallelism to Cluster Mass Spectrometry Data using Multicore Architectures.

Saeed F, Hoffert JD, Pisitkun T, Knepper MA.

Netw Model Anal Health Inform Bioinform. 2014 Apr;3:54.

7.

Early targets of lithium in rat kidney inner medullary collecting duct include p38 and ERK1/2.

Trepiccione F, Pisitkun T, Hoffert JD, Poulsen SB, Capasso G, Nielsen S, Knepper MA, Fenton RA, Christensen BM.

Kidney Int. 2014 Oct;86(4):757-67. doi: 10.1038/ki.2014.107. Epub 2014 Apr 30.

8.

Use of LC-MS/MS and Bayes' theorem to identify protein kinases that phosphorylate aquaporin-2 at Ser256.

Bradford D, Raghuram V, Wilson JL, Chou CL, Hoffert JD, Knepper MA, Pisitkun T.

Am J Physiol Cell Physiol. 2014 Jul 15;307(2):C123-39. doi: 10.1152/ajpcell.00377.2012. Epub 2014 Mar 5.

9.

PhosSA: Fast and accurate phosphorylation site assignment algorithm for mass spectrometry data.

Saeed F, Pisitkun T, Hoffert JD, Rashidian S, Wang G, Gucek M, Knepper MA.

Proteome Sci. 2013 Nov 7;11(Suppl 1):S14. doi: 10.1186/1477-5956-11-S1-S14. Epub 2013 Nov 7.

10.

Endogenous carbamylation of renal medullary proteins.

Claxton JS, Sandoval PC, Liu G, Chou CL, Hoffert JD, Knepper MA.

PLoS One. 2013 Dec 26;8(12):e82655. doi: 10.1371/journal.pone.0082655. eCollection 2013.

11.

CAMS-RS: Clustering Algorithm for Large-Scale Mass Spectrometry Data Using Restricted Search Space and Intelligent Random Sampling.

Saeed F, Hoffert JD, Knepper MA.

IEEE/ACM Trans Comput Biol Bioinform. 2014 Jan-Feb;11(1):128-41. doi: 10.1109/TCBB.2013.152.

12.

Global analysis of the effects of the V2 receptor antagonist satavaptan on protein phosphorylation in collecting duct.

Hoffert JD, Pisitkun T, Saeed F, Wilson JL, Knepper MA.

Am J Physiol Renal Physiol. 2014 Feb 15;306(4):410-21. doi: 10.1152/ajprenal.00497.2013. Epub 2013 Nov 20.

13.

Proteome-wide measurement of protein half-lives and translation rates in vasopressin-sensitive collecting duct cells.

Sandoval PC, Slentz DH, Pisitkun T, Saeed F, Hoffert JD, Knepper MA.

J Am Soc Nephrol. 2013 Nov;24(11):1793-805. doi: 10.1681/ASN.2013030279. Epub 2013 Sep 12.

14.

An Efficient Dynamic Programming Algorithm for Phosphorylation Site Assignment of Large-Scale Mass Spectrometry Data.

Saeed F, Pisitkun T, Hoffert JD, Wang G, Gucek M, Knepper MA.

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2012 Oct 4:618-625.

15.

An Efficient Algorithm for Clustering of Large-Scale Mass Spectrometry Data.

Saeed F, Pisitkun T, Knepper MA, Hoffert JD.

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2012 Oct 4:1-4.

16.

Assessment of the effect of 24-hour aldosterone administration on protein abundance in fluorescence-sorted mouse distal renal tubules by mass spectrometry.

Jensen TB, Pisitkun T, Hoffert JD, Jensen UB, Fenton RA, Praetorius HA, Knepper MA, Praetorius J.

Nephron Physiol. 2012;121(3-4):p9-15. doi: 10.1159/000346832. Epub 2013 Feb 14.

17.

Vasopressin inhibits apoptosis in renal collecting duct cells.

Miller RL, Sandoval PC, Pisitkun T, Knepper MA, Hoffert JD.

Am J Physiol Renal Physiol. 2013 Jan 15;304(2):F177-88. doi: 10.1152/ajprenal.00431.2012. Epub 2012 Nov 7.

18.

Aquaporin-2 regulation in health and disease.

Radin MJ, Yu MJ, Stoedkilde L, Miller RL, Hoffert JD, Frokiaer J, Pisitkun T, Knepper MA.

Vet Clin Pathol. 2012 Dec;41(4):455-70. doi: 10.1111/j.1939-165x.2012.00488.x. Epub 2012 Nov 6. Review.

19.

CPhos: a program to calculate and visualize evolutionarily conserved functional phosphorylation sites.

Zhao B, Pisitkun T, Hoffert JD, Knepper MA, Saeed F.

Proteomics. 2012 Nov;12(22):3299-303. doi: 10.1002/pmic.201200189. Epub 2012 Oct 29.

20.

Quantitative phosphoproteomics in nuclei of vasopressin-sensitive renal collecting duct cells.

Bolger SJ, Hurtado PA, Hoffert JD, Saeed F, Pisitkun T, Knepper MA.

Am J Physiol Cell Physiol. 2012 Nov 15;303(10):C1006-20. doi: 10.1152/ajpcell.00260.2012. Epub 2012 Sep 19.

21.

Identifying protein kinase target preferences using mass spectrometry.

Douglass J, Gunaratne R, Bradford D, Saeed F, Hoffert JD, Steinbach PJ, Knepper MA, Pisitkun T.

Am J Physiol Cell Physiol. 2012 Oct 1;303(7):C715-27. doi: 10.1152/ajpcell.00166.2012. Epub 2012 Jun 20.

22.

Quantitative proteomics identifies vasopressin-responsive nuclear proteins in collecting duct cells.

Schenk LK, Bolger SJ, Luginbuhl K, Gonzales PA, Rinschen MM, Yu MJ, Hoffert JD, Pisitkun T, Knepper MA.

J Am Soc Nephrol. 2012 Jun;23(6):1008-18. doi: 10.1681/ASN.2011070738. Epub 2012 Mar 22.

23.

Gene expression databases for kidney epithelial cells.

Huling JC, Pisitkun T, Song JH, Yu MJ, Hoffert JD, Knepper MA.

Am J Physiol Renal Physiol. 2012 Feb 15;302(4):F401-7. doi: 10.1152/ajprenal.00457.2011. Epub 2011 Nov 23. Review.

24.

Dynamics of the G protein-coupled vasopressin V2 receptor signaling network revealed by quantitative phosphoproteomics.

Hoffert JD, Pisitkun T, Saeed F, Song JH, Chou CL, Knepper MA.

Mol Cell Proteomics. 2012 Feb;11(2):M111.014613. doi: 10.1074/mcp.M111.014613. Epub 2011 Nov 21.

25.

NHLBI-AbDesigner: an online tool for design of peptide-directed antibodies.

Pisitkun T, Hoffert JD, Saeed F, Knepper MA.

Am J Physiol Cell Physiol. 2012 Jan 1;302(1):C154-64. doi: 10.1152/ajpcell.00325.2011. Epub 2011 Sep 28.

26.

Conditional Allele Mouse Planner (CAMP): software to facilitate the planning and design of breeding strategies involving mice with conditional alleles.

Hoffert JD, Pisitkun T, Miller RL.

Transgenic Res. 2012 Jun;21(3):665-9. doi: 10.1007/s11248-011-9545-3. Epub 2011 Aug 26.

PMID:
21870117
27.

Phosphoproteomics of vasopressin signaling in the kidney.

Hoffert JD, Pisitkun T, Knepper MA.

Expert Rev Proteomics. 2011 Apr;8(2):157-63. doi: 10.1586/epr.11.14. Review.

28.

Large-scale phosphoproteomic analysis of membrane proteins in renal proximal and distal tubule.

Feric M, Zhao B, Hoffert JD, Pisitkun T, Knepper MA.

Am J Physiol Cell Physiol. 2011 Apr;300(4):C755-70. doi: 10.1152/ajpcell.00360.2010. Epub 2011 Jan 5.

29.

Quantitative protein and mRNA profiling shows selective post-transcriptional control of protein expression by vasopressin in kidney cells.

Khositseth S, Pisitkun T, Slentz DH, Wang G, Hoffert JD, Knepper MA, Yu MJ.

Mol Cell Proteomics. 2011 Jan;10(1):M110.004036. doi: 10.1074/mcp.M110.004036. Epub 2010 Oct 12.

30.

Quantitative phosphoproteomic analysis reveals cAMP/vasopressin-dependent signaling pathways in native renal thick ascending limb cells.

Gunaratne R, Braucht DW, Rinschen MM, Chou CL, Hoffert JD, Pisitkun T, Knepper MA.

Proc Natl Acad Sci U S A. 2010 Aug 31;107(35):15653-8. doi: 10.1073/pnas.1007424107. Epub 2010 Aug 16.

31.

Vasopressin increases phosphorylation of Ser84 and Ser486 in Slc14a2 collecting duct urea transporters.

Hwang S, Gunaratne R, Rinschen MM, Yu MJ, Pisitkun T, Hoffert JD, Fenton RA, Knepper MA, Chou CL.

Am J Physiol Renal Physiol. 2010 Sep;299(3):F559-67. doi: 10.1152/ajprenal.00617.2009. Epub 2010 Jun 24.

32.

Quantitative phosphoproteomic analysis reveals vasopressin V2-receptor-dependent signaling pathways in renal collecting duct cells.

Rinschen MM, Yu MJ, Wang G, Boja ES, Hoffert JD, Pisitkun T, Knepper MA.

Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3882-7. doi: 10.1073/pnas.0910646107. Epub 2010 Feb 5.

33.

Quantitative analysis of aquaporin-2 phosphorylation.

Xie L, Hoffert JD, Chou CL, Yu MJ, Pisitkun T, Knepper MA, Fenton RA.

Am J Physiol Renal Physiol. 2010 Apr;298(4):F1018-23. doi: 10.1152/ajprenal.00580.2009. Epub 2010 Jan 20.

34.

Phosphoproteomic profiling reveals vasopressin-regulated phosphorylation sites in collecting duct.

Bansal AD, Hoffert JD, Pisitkun T, Hwang S, Chou CL, Boja ES, Wang G, Knepper MA.

J Am Soc Nephrol. 2010 Feb;21(2):303-15. doi: 10.1681/ASN.2009070728. Epub 2010 Jan 14.

35.

Proteomic profiling of nuclei from native renal inner medullary collecting duct cells using LC-MS/MS.

Tchapyjnikov D, Li Y, Pisitkun T, Hoffert JD, Yu MJ, Knepper MA.

Physiol Genomics. 2010 Feb 4;40(3):167-83. doi: 10.1152/physiolgenomics.00148.2009. Epub 2009 Dec 8.

36.

Identification of phosphorylation-dependent binding partners of aquaporin-2 using protein mass spectrometry.

Zwang NA, Hoffert JD, Pisitkun T, Moeller HB, Fenton RA, Knepper MA.

J Proteome Res. 2009 Mar;8(3):1540-54. doi: 10.1021/pr800894p.

37.

Aquaporin-2 in the "-omics" era.

Hoffert JD, Chou CL, Knepper MA.

J Biol Chem. 2009 May 29;284(22):14683-7. doi: 10.1074/jbc.R900006200. Epub 2009 Feb 4. Review.

38.

Large-scale proteomics and phosphoproteomics of urinary exosomes.

Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta R, Wang NS, Knepper MA.

J Am Soc Nephrol. 2009 Feb;20(2):363-79. doi: 10.1681/ASN.2008040406. Epub 2008 Dec 3.

39.

LC-MS/MS analysis of differential centrifugation fractions from native inner medullary collecting duct of rat.

Sachs AN, Pisitkun T, Hoffert JD, Yu MJ, Knepper MA.

Am J Physiol Renal Physiol. 2008 Dec;295(6):F1799-806. doi: 10.1152/ajprenal.90510.2008. Epub 2008 Oct 15.

40.

Vasopressin-stimulated increase in phosphorylation at Ser269 potentiates plasma membrane retention of aquaporin-2.

Hoffert JD, Fenton RA, Moeller HB, Simons B, Tchapyjnikov D, McDill BW, Yu MJ, Pisitkun T, Chen F, Knepper MA.

J Biol Chem. 2008 Sep 5;283(36):24617-27. doi: 10.1074/jbc.M803074200. Epub 2008 Jul 7.

41.

PhosphoScore: an open-source phosphorylation site assignment tool for MSn data.

Ruttenberg BE, Pisitkun T, Knepper MA, Hoffert JD.

J Proteome Res. 2008 Jul;7(7):3054-9. doi: 10.1021/pr800169k. Epub 2008 Jun 11.

42.

Roles of basolateral solute uptake via NKCC1 and of myosin II in vasopressin-induced cell swelling in inner medullary collecting duct.

Chou CL, Yu MJ, Kassai EM, Morris RG, Hoffert JD, Wall SM, Knepper MA.

Am J Physiol Renal Physiol. 2008 Jul;295(1):F192-201. doi: 10.1152/ajprenal.00011.2008. Epub 2008 Apr 16.

43.

Proteomic analysis of lithium-induced nephrogenic diabetes insipidus: mechanisms for aquaporin 2 down-regulation and cellular proliferation.

Nielsen J, Hoffert JD, Knepper MA, Agre P, Nielsen S, Fenton RA.

Proc Natl Acad Sci U S A. 2008 Mar 4;105(9):3634-9. doi: 10.1073/pnas.0800001105. Epub 2008 Feb 22.

44.

Acute regulation of aquaporin-2 phosphorylation at Ser-264 by vasopressin.

Fenton RA, Moeller HB, Hoffert JD, Yu MJ, Nielsen S, Knepper MA.

Proc Natl Acad Sci U S A. 2008 Feb 26;105(8):3134-9. doi: 10.1073/pnas.0712338105. Epub 2008 Feb 19.

45.

Taking aim at shotgun phosphoproteomics.

Hoffert JD, Knepper MA.

Anal Biochem. 2008 Apr 1;375(1):1-10. Epub 2007 Nov 22. Review. No abstract available.

46.

Tandem mass spectrometry in physiology.

Pisitkun T, Hoffert JD, Yu MJ, Knepper MA.

Physiology (Bethesda). 2007 Dec;22:390-400. Review.

47.

An automated platform for analysis of phosphoproteomic datasets: application to kidney collecting duct phosphoproteins.

Hoffert JD, Wang G, Pisitkun T, Shen RF, Knepper MA.

J Proteome Res. 2007 Sep;6(9):3501-8. Epub 2007 Aug 7.

48.

Exosomal Fetuin-A identified by proteomics: a novel urinary biomarker for detecting acute kidney injury.

Zhou H, Pisitkun T, Aponte A, Yuen PS, Hoffert JD, Yasuda H, Hu X, Chawla L, Shen RF, Knepper MA, Star RA.

Kidney Int. 2006 Nov;70(10):1847-57. Epub 2006 Oct 4.

49.

Dynamics of aquaporin-2 serine-261 phosphorylation in response to short-term vasopressin treatment in collecting duct.

Hoffert JD, Nielsen J, Yu MJ, Pisitkun T, Schleicher SM, Nielsen S, Knepper MA.

Am J Physiol Renal Physiol. 2007 Feb;292(2):F691-700. Epub 2006 Sep 19.

50.

Automated quantification tool for high-throughput proteomics using stable isotope labeling and LC-MSn.

Wang G, Wu WW, Pisitkun T, Hoffert JD, Knepper MA, Shen RF.

Anal Chem. 2006 Aug 15;78(16):5752-61.

PMID:
16906720

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