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Items: 1 to 50 of 182

1.

Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges.

Ellrott K, Buchanan A, Creason A, Mason M, Schaffter T, Hoff B, Eddy J, Chilton JM, Yu T, Stuart JM, Saez-Rodriguez J, Stolovitzky G, Boutros PC, Guinney J.

Genome Biol. 2019 Sep 10;20(1):195. doi: 10.1186/s13059-019-1794-0.

2.

Antibiotic Dosing for Critically Ill Adult Patients Receiving Intermittent Hemodialysis, Prolonged Intermittent Renal Replacement Therapy, and Continuous Renal Replacement Therapy: An Update.

Hoff BM, Maker JH, Dager WE, Heintz BH.

Ann Pharmacother. 2019 Jul 25:1060028019865873. doi: 10.1177/1060028019865873. [Epub ahead of print]

PMID:
31342772
3.

Potent and selective EGFR inhibitors based on 5-aryl-7H-pyrrolopyrimidin-4-amines.

Reiersølmoen AC, Aarhus TI, Eckelt S, Nørsett KG, Sundby E, Hoff BH.

Bioorg Chem. 2019 Jul;88:102918. doi: 10.1016/j.bioorg.2019.102918. Epub 2019 Apr 11.

PMID:
30999245
4.

Anisotropy of W-band complex permittivity in Al2O3.

Telmer MR, Hilario MS, Hoff BW, Lanagan MT, Reeja-Jayan B.

J Phys Condens Matter. 2019 Jun 5;31(22):225702. doi: 10.1088/1361-648X/ab0b09. Epub 2019 Feb 27.

PMID:
30812016
5.

Diagnostic stewardship of C. difficile testing: a quasi-experimental antimicrobial stewardship study.

Christensen AB, Barr VO, Martin DW, Anderson MM, Gibson AK, Hoff BM, Sutton SH, Widmaier V, Salim AA, Silkaitis C, Qi C, Zembower TR, Postelnick MJ, Rhodes NJ.

Infect Control Hosp Epidemiol. 2019 Mar;40(3):269-275. doi: 10.1017/ice.2018.336. Epub 2019 Feb 21.

PMID:
30786942
6.

Vascular Deformation Mapping (VDM) of thoracic aortic aneurysm: an application for color 3D printing in aortic disease.

Burris NS, Hoff BA, Ross BD.

Ann Transl Med. 2018 Dec;6(Suppl 2):S123. doi: 10.21037/atm.2018.12.16. No abstract available.

7.

Stratification of amyotrophic lateral sclerosis patients: a crowdsourcing approach.

Kueffner R, Zach N, Bronfeld M, Norel R, Atassi N, Balagurusamy V, Di Camillo B, Chio A, Cudkowicz M, Dillenberger D, Garcia-Garcia J, Hardiman O, Hoff B, Knight J, Leitner ML, Li G, Mangravite L, Norman T, Wang L; ALS Stratification Consortium, Xiao J, Fang WC, Peng J, Yang C, Chang HJ, Stolovitzky G.

Sci Rep. 2019 Jan 24;9(1):690. doi: 10.1038/s41598-018-36873-4.

8.

Influence of Inspiratory/Expiratory CT Registration on Quantitative Air Trapping.

Weinheimer O, Hoff BA, Fortuna AB, Fernández-Baldera A, Konietzke P, Wielpütz MO, Robinson TE, Galbán CJ.

Acad Radiol. 2019 Sep;26(9):1202-1214. doi: 10.1016/j.acra.2018.11.001. Epub 2018 Dec 10.

PMID:
30545681
9.

Three-Dimensional Growth Analysis of Thoracic Aortic Aneurysm With Vascular Deformation Mapping.

Burris NS, Hoff BA, Patel HJ, Kazerooni EA, Ross BD.

Circ Cardiovasc Imaging. 2018 Aug;11(8):e008045. doi: 10.1161/CIRCIMAGING.118.008045. No abstract available.

10.

Data on dielectric strength heterogeneity associated with printing orientation in additively manufactured polymer materials.

Hoff BW, Maestas SS, Hayden SC, Harrigan DJ, Grudt RO, Ostraat ML, Horwath JC, Leontsev S.

Data Brief. 2018 Aug 3;20:480-489. doi: 10.1016/j.dib.2018.07.070. eCollection 2018 Oct.

11.

Multimodal imaging provides insight into targeted therapy response in metastatic prostate cancer to the bone.

Hoff BA, Brisset JC, Galbán S, Van Dort M, Smith DC, Reichert ZR, Jacobson JA, Luker GD, Chenevert TL, Ross BD.

Am J Nucl Med Mol Imaging. 2018 Jun 5;8(3):189-199. eCollection 2018.

12.

Implementation of a multifaceted program to sustainably improve appropriate intraoperative antibiotic redosing.

O'Sullivan CT, Rogers WK, Ackman M, Goto M, Hoff BM.

Am J Infect Control. 2019 Jan;47(1):74-77. doi: 10.1016/j.ajic.2018.06.007. Epub 2018 Jul 20.

PMID:
30037659
13.

Identification of fused pyrimidines as interleukin 17 secretion inhibitors.

Reiersølmoen AC, Han J, Sundby E, Hoff BH.

Eur J Med Chem. 2018 Jul 15;155:562-578. doi: 10.1016/j.ejmech.2018.06.019. Epub 2018 Jun 15.

PMID:
29909341
14.

Multisite Concordance of DSC-MRI Analysis for Brain Tumors: Results of a National Cancer Institute Quantitative Imaging Network Collaborative Project.

Schmainda KM, Prah MA, Rand SD, Liu Y, Logan B, Muzi M, Rane SD, Da X, Yen YF, Kalpathy-Cramer J, Chenevert TL, Hoff B, Ross B, Cao Y, Aryal MP, Erickson B, Korfiatis P, Dondlinger T, Bell L, Hu L, Kinahan PE, Quarles CC.

AJNR Am J Neuroradiol. 2018 Jun;39(6):1008-1016. doi: 10.3174/ajnr.A5675. Epub 2018 May 24.

15.

Patient perceptions of antibiotic use and resistance at a single university dermatology clinic.

Goettsche LS, Weig EA, Chung J, Hoff BM, Ince D, Wanat KA.

J Dermatolog Treat. 2019 Feb;30(1):92-95. doi: 10.1080/09546634.2018.1473549. Epub 2018 May 21.

PMID:
29726725
16.

Implementation of a Mobile Clinical Decision Support Application to Augment Local Antimicrobial Stewardship.

Hoff BM, Ford DC, Ince D, Ernst EJ, Livorsi DJ, Heintz BH, Masse V, Brownlee MJ, Ford BA.

J Pathol Inform. 2018 Apr 2;9:10. doi: 10.4103/jpi.jpi_77_17. eCollection 2018.

17.

Improved riboflavin production with Ashbya gossypii from vegetable oil based on 13C metabolic network analysis with combined labeling analysis by GC/MS, LC/MS, 1D, and 2D NMR.

Schwechheimer SK, Becker J, Peyriga L, Portais JC, Sauer D, Müller R, Hoff B, Haefner S, Schröder H, Zelder O, Wittmann C.

Metab Eng. 2018 May;47:357-373. doi: 10.1016/j.ymben.2018.04.005. Epub 2018 Apr 12.

PMID:
29654833
18.

Research Agenda for Antimicrobial Stewardship in the Veterans Health Administration.

Suda KJ, Livorsi DJ, Goto M, Forrest GN, Jones MM, Neuhauser MM, Hoff BM, Ince D, Carrel M, Nair R, Knobloch MJ, Goetz MB.

Infect Control Hosp Epidemiol. 2018 Feb;39(2):196-201. doi: 10.1017/ice.2017.299. No abstract available.

PMID:
29417925
19.

Urine Testing During Hospitalization: We Need to Keep Digging.

Puig-Asensio M, Hoff BM, Ince D.

Clin Infect Dis. 2018 May 2;66(10):1646-1647. doi: 10.1093/cid/cix1098. No abstract available.

PMID:
29272337
20.

Vascular Deformation Mapping (VDM) of Thoracic Aortic Enlargement in Aneurysmal Disease and Dissection.

Burris NS, Hoff BA, Kazerooni EA, Ross BD.

Tomography. 2017 Sep;3(3):163-173. doi: 10.18383/j.tom.2017.00015.

21.

A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines.

Gönen M, Weir BA, Cowley GS, Vazquez F, Guan Y, Jaiswal A, Karasuyama M, Uzunangelov V, Wang T, Tsherniak A, Howell S, Marbach D, Hoff B, Norman TC, Airola A, Bivol A, Bunte K, Carlin D, Chopra S, Deran A, Ellrott K, Gopalacharyulu P, Graim K, Kaski S, Khan SA, Newton Y, Ng S, Pahikkala T, Paull E, Sokolov A, Tang H, Tang J, Wennerberg K, Xie Y, Zhan X, Zhu F; Broad-DREAM Community, Aittokallio T, Mamitsuka H, Stuart JM, Boehm JS, Root DE, Xiao G, Stolovitzky G, Hahn WC, Margolin AA.

Cell Syst. 2017 Nov 22;5(5):485-497.e3. doi: 10.1016/j.cels.2017.09.004. Epub 2017 Oct 4.

22.

Is literature data useful for identifying enzyme catalysts for new substrates? A case study on reduction of 1-aryl-2-alkanoates.

Hoff BH, Sundby E.

Bioorg Chem. 2017 Oct;74:260-271. doi: 10.1016/j.bioorg.2017.08.005. Epub 2017 Aug 31.

PMID:
28881254
23.

Accuracy of a cow-side test for the diagnosis of hyperketonemia and hypoglycemia in lactating dairy cows.

Macmillan K, López Helguera I, Behrouzi A, Gobikrushanth M, Hoff B, Colazo MG.

Res Vet Sci. 2017 Dec;115:327-331. doi: 10.1016/j.rvsc.2017.06.019. Epub 2017 Jun 27.

PMID:
28672253
24.

Single-step microwave-assisted hot water extraction of hemicelluloses from selected lignocellulosic materials - A biorefinery approach.

Mihiretu GT, Brodin M, Chimphango AF, Øyaas K, Hoff BH, Görgens JF.

Bioresour Technol. 2017 Oct;241:669-680. doi: 10.1016/j.biortech.2017.05.159. Epub 2017 May 30.

PMID:
28609755
25.

CT-Based Local Distribution Metric Improves Characterization of COPD.

Hoff BA, Pompe E, Galbán S, Postma DS, Lammers JJ, Ten Hacken NHT, Koenderman L, Johnson TD, Verleden SE, de Jong PA, Mohamed Hoesein FAA, van den Berge M, Ross BD, Galbán CJ.

Sci Rep. 2017 Jun 7;7(1):2999. doi: 10.1038/s41598-017-02871-1.

26.

Solvent Effects on Optical Rotation: On the Balance between Hydrogen Bonding and Shifts in Dihedral Angles.

Haghdani S, Hoff BH, Koch H, Åstrand PO.

J Phys Chem A. 2017 Jun 29;121(25):4765-4777. doi: 10.1021/acs.jpca.6b12149. Epub 2017 Jun 16.

PMID:
28562042
27.

MRI-Guided Stereotactic Biopsy of Murine GBM for Spatiotemporal Molecular Genomic Assessment.

Galbán S, Al-Holou WN, Wang H, Welton AR, Heist K, Hu XK, Verhaak RG, Zhu Y, Espinoza C, Chenevert TL, Hoff BA, Galbán CJ, Ross BD.

Tomography. 2017 Mar;3(1):9-15. doi: 10.18383/j.tom.2017.00112.

28.

Changes in cellular signaling proteins in extracts from A549, H460, and U2OS cells treated with cisplatin or docetaxel.

Petrovic V, Olaisen C, Sharma A, Nepal A, Bugge S, Sundby E, Hoff BH, Slupphaug G, Otterlei M.

Data Brief. 2017 Mar 18;12:18-21. doi: 10.1016/j.dib.2017.03.023. eCollection 2017 Jun.

29.

Semiautomated Workflow for Clinically Streamlined Glioma Parametric Response Mapping.

Keith L, Ross BD, Galbán CJ, Luker GD, Galbán S, Zhao B, Guo X, Chenevert TL, Hoff BA.

Tomography. 2016 Dec;2(4):267-275. doi: 10.18383/j.tom.2016.00181.

30.

On-column trypsinization allows for re-use of matrix in modified multiplexed inhibitor beads assay.

Petrovic V, Olaisen C, Sharma A, Nepal A, Bugge S, Sundby E, Hoff BH, Slupphaug G, Otterlei M.

Anal Biochem. 2017 Apr 15;523:10-16. doi: 10.1016/j.ab.2017.01.027. Epub 2017 Feb 3.

31.

Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.

Sieberts SK, Zhu F, García-García J, Stahl E, Pratap A, Pandey G, Pappas D, Aguilar D, Anton B, Bonet J, Eksi R, Fornés O, Guney E, Li H, Marín MA, Panwar B, Planas-Iglesias J, Poglayen D, Cui J, Falcao AO, Suver C, Hoff B, Balagurusamy VSK, Dillenberger D, Neto EC, Norman T, Aittokallio T, Ammad-Ud-Din M, Azencott CA, Bellón V, Boeva V, Bunte K, Chheda H, Cheng L, Corander J, Dumontier M, Goldenberg A, Gopalacharyulu P, Hajiloo M, Hidru D, Jaiswal A, Kaski S, Khalfaoui B, Khan SA, Kramer ER, Marttinen P, Mezlini AM, Molparia B, Pirinen M, Saarela J, Samwald M, Stoven V, Tang H, Tang J, Torkamani A, Vert JP, Wang B, Wang T, Wennerberg K, Wineinger NE, Xiao G, Xie Y, Yeung R, Zhan X, Zhao C; Members of the Rheumatoid Arthritis Challenge Consortium, Greenberg J, Kremer J, Michaud K, Barton A, Coenen M, Mariette X, Miceli C, Shadick N, Weinblatt M, de Vries N, Tak PP, Gerlag D, Huizinga TWJ, Kurreeman F, Allaart CF, Bridges SL Jr, Criswell L, Moreland L, Klareskog L, Saevarsdottir S, Padyukov L, Gregersen PK, Friend S, Plenge R, Stolovitzky G, Oliva B, Guan Y, Mangravite LM.

Nat Commun. 2016 Oct 10;7:13205. doi: 10.1038/ncomms13205. No abstract available.

32.

Optical Rotation Calculations for Fluorinated Alcohols, Amines, Amides, and Esters.

Haghdani S, Hoff BH, Koch H, Åstrand PO.

J Phys Chem A. 2016 Oct 13;120(40):7973-7986. doi: 10.1021/acs.jpca.6b08899. Epub 2016 Oct 4.

PMID:
27652907
33.

Balancing potency, metabolic stability and permeability in pyrrolopyrimidine-based EGFR inhibitors.

Han J, Henriksen S, Nørsett KG, Sundby E, Hoff BH.

Eur J Med Chem. 2016 Nov 29;124:583-607. doi: 10.1016/j.ejmech.2016.08.068. Epub 2016 Aug 31.

PMID:
27614407
34.

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.

Sieberts SK, Zhu F, García-García J, Stahl E, Pratap A, Pandey G, Pappas D, Aguilar D, Anton B, Bonet J, Eksi R, Fornés O, Guney E, Li H, Marín MA, Panwar B, Planas-Iglesias J, Poglayen D, Cui J, Falcao AO, Suver C, Hoff B, Balagurusamy VSK, Dillenberger D, Neto EC, Norman T, Aittokallio T, Ammad-Ud-Din M, Azencott CA, Bellón V, Boeva V, Bunte K, Chheda H, Cheng L, Corander J, Dumontier M, Goldenberg A, Gopalacharyulu P, Hajiloo M, Hidru D, Jaiswal A, Kaski S, Khalfaoui B, Khan SA, Kramer ER, Marttinen P, Mezlini AM, Molparia B, Pirinen M, Saarela J, Samwald M, Stoven V, Tang H, Tang J, Torkamani A, Vert JP, Wang B, Wang T, Wennerberg K, Wineinger NE, Xiao G, Xie Y, Yeung R, Zhan X, Zhao C; Members of the Rheumatoid Arthritis Challenge Consortium, Greenberg J, Kremer J, Michaud K, Barton A, Coenen M, Mariette X, Miceli C, Shadick N, Weinblatt M, de Vries N, Tak PP, Gerlag D, Huizinga TWJ, Kurreeman F, Allaart CF, Louis Bridges S Jr, Criswell L, Moreland L, Klareskog L, Saevarsdottir S, Padyukov L, Gregersen PK, Friend S, Plenge R, Stolovitzky G, Oliva B, Guan Y, Mangravite LM.

Nat Commun. 2016 Aug 23;7:12460. doi: 10.1038/ncomms12460. Erratum in: Nat Commun. 2016 Oct 10;7:13205.

35.

Chiral 6-aryl-furo[2,3-d]pyrimidin-4-amines as EGFR inhibitors.

Han J, Kaspersen SJ, Nervik S, Nørsett KG, Sundby E, Hoff BH.

Eur J Med Chem. 2016 Aug 25;119:278-99. doi: 10.1016/j.ejmech.2016.04.054. Epub 2016 Apr 25.

PMID:
27235841
36.

A Pilot Study of Quantitative MRI Parametric Response Mapping of Bone Marrow Fat for Treatment Assessment in Myelofibrosis.

Luker GD, Nguyen HM, Hoff BA, Galbán CJ, Hernando D, Chenevert TL, Talpaz M, Ross BD.

Tomography. 2016 Mar;2(1):67-78.

37.

Apparatus for generating quasi-free-space microwave-driven plasmas.

Hoff BW, French DM, Reid RR, Lawrance JE, Lepell PD, Maestas SS.

Rev Sci Instrum. 2016 Mar;87(3):033507. doi: 10.1063/1.4944865.

PMID:
27036777
38.

Streamlined Hyperacute Magnetic Resonance Imaging Protocol Identifies Tissue-Type Plasminogen Activator-Eligible Stroke Patients When Clinical Impression Is Stroke Mimic.

Goyal MS, Hoff BG, Williams J, Khoury N, Wiesehan R, Heitsch L, Panagos P, Vo KD, Benzinger T, Derdeyn CP, Lee JM, Ford AL.

Stroke. 2016 Apr;47(4):1012-7. doi: 10.1161/STROKEAHA.115.011913. Epub 2016 Feb 18.

39.

Effect of repeated through-and-through joint lavage on serum amyloid A in synovial fluid from healthy horses.

Sanchez-Teran AF, Bracamonte JL, Hendrick S, Riddell L, Musil K, Hoff B, Rubio-Martínez LM.

Vet J. 2016 Apr;210:30-3. doi: 10.1016/j.tvjl.2016.01.001. Epub 2016 Jan 11.

PMID:
26831179
40.

Diffusion MRI in early cancer therapeutic response assessment.

Galbán CJ, Hoff BA, Chenevert TL, Ross BD.

NMR Biomed. 2017 Mar;30(3). doi: 10.1002/nbm.3458. Epub 2016 Jan 15. Review.

41.

Potential for Early Fracture Risk Assessment in Patients with Metastatic Bone Disease using Parametric Response Mapping of CT Images.

Hoff BA, Toole M, Yablon C, Ross BD, Luker GD, VanPoznak C, Galbán CJ.

Tomography. 2015 Dec;1(2):98-104.

42.

Effect of Arthroscopic Lavage on Systemic and Synovial Fluid Serum Amyloid A in Healthy Horses.

Sanchez-Teran AF, Bracamonte JL, Hendrick S, Burguess HJ, Duke-Novakovski T, Schott M, Hoff B, Rubio-Martínez LM.

Vet Surg. 2016 Feb;45(2):223-30. doi: 10.1111/vsu.12439. Epub 2016 Jan 15.

PMID:
26767549
43.

Charging C60 islands with the AFM tip.

Hoff B, Henry CR, Barth C.

Nanoscale. 2016 Jan 7;8(1):411-9. doi: 10.1039/c5nr04541j.

PMID:
26617348
44.

Extended structure-activity study of thienopyrimidine-based EGFR inhibitors with evaluation of drug-like properties.

Bugge S, Buene AF, Jurisch-Yaksi N, Moen IU, Skjønsfjell EM, Sundby E, Hoff BH.

Eur J Med Chem. 2016 Jan 1;107:255-74. doi: 10.1016/j.ejmech.2015.11.012. Epub 2015 Nov 11.

PMID:
26599532
45.

The Impact of Sources of Variability on Parametric Response Mapping of Lung CT Scans.

Boes JL, Bule M, Hoff BA, Chamberlain R, Lynch DA, Stojanovska J, Martinez FJ, Han MK, Kazerooni EA, Ross BD, Galbán CJ.

Tomography. 2015 Sep;1(1):69-77.

46.

Development of a Multiparametric Voxel-Based Magnetic Resonance Imaging Biomarker for Early Cancer Therapeutic Response Assessment.

Galbán CJ, Lemasson B, Hoff BA, Johnson TD, Sundgren PC, Tsien C, Chenevert TL, Ross BD.

Tomography. 2015 Sep;1(1):44-52.

47.

In vitro baselining of new pyrrolopyrimidine EGFR-TK inhibitors with Erlotinib.

Sundby E, Han J, Kaspersen SJ, Hoff BH.

Eur J Pharm Sci. 2015 Dec 1;80:56-65. doi: 10.1016/j.ejps.2015.08.003. Epub 2015 Aug 19.

PMID:
26296860
48.

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models.

Karr JR, Williams AH, Zucker JD, Raue A, Steiert B, Timmer J, Kreutz C; DREAM8 Parameter Estimation Challenge Consortium, Wilkinson S, Allgood BA, Bot BM, Hoff BR, Kellen MR, Covert MW, Stolovitzky GA, Meyer P.

PLoS Comput Biol. 2015 May 28;11(5):e1004096. doi: 10.1371/journal.pcbi.1004096. eCollection 2015 May.

49.

Apparent diffusion coefficient is highly reproducible on preclinical imaging systems: Evidence from a seven-center multivendor study.

Doblas S, Almeida GS, Blé FX, Garteiser P, Hoff BA, McIntyre DJ, Wachsmuth L, Chenevert TL, Faber C, Griffiths JR, Jacobs AH, Morris DM, O'Connor JP, Robinson SP, Van Beers BE, Waterton JC.

J Magn Reson Imaging. 2015 Dec;42(6):1759-64. doi: 10.1002/jmri.24955. Epub 2015 May 26.

50.

Evaluation and comparison of two commercially available targeted next-generation sequencing platforms to assist oncology decision making.

Weiss GJ, Hoff BR, Whitehead RP, Sangal A, Gingrich SA, Penny RJ, Mallery DW, Morris SM, Thompson EJ, Loesch DM, Khemka V.

Onco Targets Ther. 2015 Apr 24;8:959-67. doi: 10.2147/OTT.S81995. eCollection 2015.

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