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Items: 7

1.

Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds.

Wilhelmsson PKI, Chandler JO, Fernandez-Pozo N, Graeber K, Ullrich KK, Arshad W, Khan S, Hofberger JA, Buchta K, Edger PP, Pires JC, Schranz ME, Leubner-Metzger G, Rensing SA.

BMC Genomics. 2019 Jan 30;20(1):95. doi: 10.1186/s12864-019-5452-4.

2.

Flower power and the mustard bomb: Comparative analysis of gene and genome duplications in glucosinolate biosynthetic pathway evolution in Cleomaceae and Brassicaceae.

van den Bergh E, Hofberger JA, Schranz ME.

Am J Bot. 2016 Jul;103(7):1212-22. doi: 10.3732/ajb.1500445. Epub 2016 Jun 16.

3.

The butterfly plant arms-race escalated by gene and genome duplications.

Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, Wright SI, dePamphilis CW, Eric Schranz M, Barker MS, Conant GC, Wahlberg N, Vogel H, Pires JC, Wheat CW.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8362-6. doi: 10.1073/pnas.1503926112. Epub 2015 Jun 22.

4.

Large-Scale Evolutionary Analysis of Genes and Supergene Clusters from Terpenoid Modular Pathways Provides Insights into Metabolic Diversification in Flowering Plants.

Hofberger JA, Ramirez AM, Bergh Ev, Zhu X, Bouwmeester HJ, Schuurink RC, Schranz ME.

PLoS One. 2015 Jun 5;10(6):e0128808. doi: 10.1371/journal.pone.0128808. eCollection 2015.

5.

A complex interplay of tandem- and whole-genome duplication drives expansion of the L-type lectin receptor kinase gene family in the brassicaceae.

Hofberger JA, Nsibo DL, Govers F, Bouwmeester K, Schranz ME.

Genome Biol Evol. 2015 Jan 28;7(3):720-34. doi: 10.1093/gbe/evv020.

6.
7.

Whole genome and tandem duplicate retention facilitated glucosinolate pathway diversification in the mustard family.

Hofberger JA, Lyons E, Edger PP, Chris Pires J, Eric Schranz M.

Genome Biol Evol. 2013;5(11):2155-73. doi: 10.1093/gbe/evt162.

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