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Items: 44

1.

Molecular basis for functional diversity among microbial Nep1-like proteins.

Lenarčič T, Pirc K, Hodnik V, Albert I, Borišek J, Magistrato A, Nürnberger T, Podobnik M, Anderluh G.

PLoS Pathog. 2019 Sep 3;15(9):e1007951. doi: 10.1371/journal.ppat.1007951. eCollection 2019 Sep.

2.

Crystal structures of cholera toxin in complex with fucosylated receptors point to importance of secondary binding site.

Heim JB, Hodnik V, Heggelund JE, Anderluh G, Krengel U.

Sci Rep. 2019 Aug 22;9(1):12243. doi: 10.1038/s41598-019-48579-2.

3.

Functional studies of aegerolysin and MACPF-like proteins in Aspergillus niger.

Novak M, Čepin U, Hodnik V, Narat M, Jamnik M, Kraševec N, Sepčić K, Anderluh G.

Mol Microbiol. 2019 Oct;112(4):1253-1269. doi: 10.1111/mmi.14360. Epub 2019 Aug 16.

PMID:
31376198
4.

Surface Plasmon Resonance for Measuring Interactions of Proteins with Lipids and Lipid Membranes.

Šakanovič A, Hodnik V, Anderluh G.

Methods Mol Biol. 2019;2003:53-70. doi: 10.1007/978-1-4939-9512-7_3.

PMID:
31218613
5.

The Escherichia coli colibactin resistance protein ClbS is a novel DNA binding protein that protects DNA from nucleolytic degradation.

Molan K, Podlesek Z, Hodnik V, Butala M, Oswald E, Žgur Bertok D.

DNA Repair (Amst). 2019 Jul;79:50-54. doi: 10.1016/j.dnarep.2019.05.003. Epub 2019 May 19.

6.

Structural Insights into Bacteriophage GIL01 gp7 Inhibition of Host LexA Repressor.

Caveney NA, Pavlin A, Caballero G, Bahun M, Hodnik V, de Castro L, Fornelos N, Butala M, Strynadka NCJ.

Structure. 2019 Jul 2;27(7):1094-1102.e4. doi: 10.1016/j.str.2019.03.019. Epub 2019 May 2.

PMID:
31056420
7.

Pore-forming protein complexes from Pleurotus mushrooms kill western corn rootworm and Colorado potato beetle through targeting membrane ceramide phosphoethanolamine.

Panevska A, Hodnik V, Skočaj M, Novak M, Modic Š, Pavlic I, Podržaj S, Zarić M, Resnik N, Maček P, Veranič P, Razinger J, Sepčić K.

Sci Rep. 2019 Mar 25;9(1):5073. doi: 10.1038/s41598-019-41450-4.

8.

Specificity of Escherichia coli Heat-Labile Enterotoxin Investigated by Single-Site Mutagenesis and Crystallography.

Heggelund JE, Heim JB, Bajc G, Hodnik V, Anderluh G, Krengel U.

Int J Mol Sci. 2019 Feb 6;20(3). pii: E703. doi: 10.3390/ijms20030703.

9.

Arabidopsis seryl-tRNA synthetase: the first crystal structure and novel protein interactor of plant aminoacyl-tRNA synthetase.

Kekez M, Zanki V, Kekez I, Baranasic J, Hodnik V, Duchêne AM, Anderluh G, Gruic-Sovulj I, Matković-Čalogović D, Weygand-Durasevic I, Rokov-Plavec J.

FEBS J. 2019 Feb;286(3):536-554. doi: 10.1111/febs.14735. Epub 2019 Jan 3.

PMID:
30570212
10.

Application of fragment based virtual screening towards inhibition of bacterial N-acetyglucosaminidase$.

Tibaut T, Tomašič T, Hodnik V, Anderluh M, Pintar S, Novič M, Turk D.

SAR QSAR Environ Res. 2018 Sep;29(9):647-660. doi: 10.1080/1062936X.2018.1504116. Epub 2018 Aug 30.

PMID:
30160524
11.

Discovery of (phenylureido)piperidinyl benzamides as prospective inhibitors of bacterial autolysin E from Staphylococcus aureus.

Borišek J, Pintar S, Ogrizek M, Grdadolnik SG, Hodnik V, Turk D, Perdih A, Novič M.

J Enzyme Inhib Med Chem. 2018 Dec;33(1):1239-1247. doi: 10.1080/14756366.2018.1493474.

12.

Lytic gene expression in the temperate bacteriophage GIL01 is activated by a phage-encoded LexA homologue.

Fornelos N, Browning DF, Pavlin A, Podlesek Z, Hodnik V, Salas M, Butala M.

Nucleic Acids Res. 2018 Oct 12;46(18):9432-9443. doi: 10.1093/nar/gky646.

13.

Development and Characterization of Peptide Ligands of Immunoglobulin G Fc Region.

Kruljec N, Molek P, Hodnik V, Anderluh G, Bratkovič T.

Bioconjug Chem. 2018 Aug 15;29(8):2763-2775. doi: 10.1021/acs.bioconjchem.8b00395. Epub 2018 Aug 1.

PMID:
30024737
14.

Kinetically Stable Triglyceride-Based Nanodroplets and Their Interactions with Lipid-Specific Proteins.

Vezočnik V, Hodnik V, Sitar S, Okur HI, Tušek-Žnidarič M, Lütgebaucks C, Sepčić K, Kogej K, Roke S, Žagar E, Maček P.

Langmuir. 2018 Jul 31;34(30):8983-8993. doi: 10.1021/acs.langmuir.8b02180. Epub 2018 Jul 19.

PMID:
29983071
15.

19F NMR studies provide insights into lipid membrane interactions of listeriolysin O, a pore forming toxin from Listeria monocytogenes.

Kozorog M, Sani MA, Lenarčič Živković M, Ilc G, Hodnik V, Separovic F, Plavec J, Anderluh G.

Sci Rep. 2018 May 2;8(1):6894. doi: 10.1038/s41598-018-24692-6.

16.

Eudicot plant-specific sphingolipids determine host selectivity of microbial NLP cytolysins.

Lenarčič T, Albert I, Böhm H, Hodnik V, Pirc K, Zavec AB, Podobnik M, Pahovnik D, Žagar E, Pruitt R, Greimel P, Yamaji-Hasegawa A, Kobayashi T, Zienkiewicz A, Gömann J, Mortimer JC, Fang L, Mamode-Cassim A, Deleu M, Lins L, Oecking C, Feussner I, Mongrand S, Anderluh G, Nürnberger T.

Science. 2017 Dec 15;358(6369):1431-1434. doi: 10.1126/science.aan6874.

PMID:
29242345
17.

Rosuvastatin and Atorvastatin Are Ligands of the Human Constitutive Androstane Receptor/Retinoid X Receptor α Complex.

Režen T, Hafner M, Kortagere S, Ekins S, Hodnik V, Rozman D.

Drug Metab Dispos. 2017 Aug;45(8):974-976. doi: 10.1124/dmd.117.075523. Epub 2017 May 23.

PMID:
28536098
18.

How to Study Protein-protein Interactions.

Podobnik M, Kraševec N, Bedina Zavec A, Naneh O, Flašker A, Caserman S, Hodnik V, Anderluh G.

Acta Chim Slov. 2016;63(3):424-39. Review.

PMID:
27640371
19.

Development of Recombinant Lactococcus lactis Displaying Albumin-Binding Domain Variants against Shiga Toxin 1 B Subunit.

Zadravec P, Marečková L, Petroková H, Hodnik V, Perišić Nanut M, Anderluh G, Štrukelj B, Malý P, Berlec A.

PLoS One. 2016 Sep 8;11(9):e0162625. doi: 10.1371/journal.pone.0162625. eCollection 2016.

20.

High-Resolution Crystal Structures Elucidate the Molecular Basis of Cholera Blood Group Dependence.

Heggelund JE, Burschowsky D, Bjørnestad VA, Hodnik V, Anderluh G, Krengel U.

PLoS Pathog. 2016 Apr 15;12(4):e1005567. doi: 10.1371/journal.ppat.1005567. eCollection 2016 Apr.

21.

Bacteriophage GIL01 gp7 interacts with host LexA repressor to enhance DNA binding and inhibit RecA-mediated auto-cleavage.

Fornelos N, Butala M, Hodnik V, Anderluh G, Bamford JK, Salas M.

Nucleic Acids Res. 2015 Sep 3;43(15):7315-29. doi: 10.1093/nar/gkv634. Epub 2015 Jul 2.

22.

The Pseudomonas aeruginosa RhlR-controlled aegerolysin RahU is a low-affinity rhamnolipid-binding protein.

Miklavič Š, Kogovšek P, Hodnik V, Korošec J, Kladnik A, Anderluh G, Gutierrez-Aguirre I, Maček P, Butala M.

FEMS Microbiol Lett. 2015 May;362(10). pii: fnv069. doi: 10.1093/femsle/fnv069. Epub 2015 Apr 28.

PMID:
25926530
23.

Direct interaction of actin filaments with F-BAR protein pacsin2.

Kostan J, Salzer U, Orlova A, Törö I, Hodnik V, Senju Y, Zou J, Schreiner C, Steiner J, Meriläinen J, Nikki M, Virtanen I, Carugo O, Rappsilber J, Lappalainen P, Lehto VP, Anderluh G, Egelman EH, Djinović-Carugo K.

EMBO Rep. 2014 Nov;15(11):1154-62. doi: 10.15252/embr.201439267. Epub 2014 Sep 12.

24.

The LexA regulated genes of the Clostridium difficile.

Walter BM, Rupnik M, Hodnik V, Anderluh G, Dupuy B, Paulič N, Žgur-Bertok D, Butala M.

BMC Microbiol. 2014 Apr 8;14:88. doi: 10.1186/1471-2180-14-88.

25.

Tracking cholesterol/sphingomyelin-rich membrane domains with the ostreolysin A-mCherry protein.

Skočaj M, Resnik N, Grundner M, Ota K, Rojko N, Hodnik V, Anderluh G, Sobota A, Maček P, Veranič P, Sepčić K.

PLoS One. 2014 Mar 24;9(3):e92783. doi: 10.1371/journal.pone.0092783. eCollection 2014.

26.

Archaeal aminoacyl-tRNA synthetases interact with the ribosome to recycle tRNAs.

Godinic-Mikulcic V, Jaric J, Greber BJ, Franke V, Hodnik V, Anderluh G, Ban N, Weygand-Durasevic I.

Nucleic Acids Res. 2014 Apr;42(8):5191-201. doi: 10.1093/nar/gku164. Epub 2014 Feb 24.

27.

Surface plasmon resonance for monitoring the interaction of Potato virus Y with monoclonal antibodies.

Gutiérrez-Aguirre I, Hodnik V, Glais L, Rupar M, Jacquot E, Anderluh G, Ravnikar M.

Anal Biochem. 2014 Feb 15;447:74-81. doi: 10.1016/j.ab.2013.10.032. Epub 2013 Nov 9.

PMID:
24220292
28.

Novel toll-like receptor 4 (TLR4) antagonists identified by structure- and ligand-based virtual screening.

Švajger U, Brus B, Turk S, Sova M, Hodnik V, Anderluh G, Gobec S.

Eur J Med Chem. 2013;70:393-9. doi: 10.1016/j.ejmech.2013.10.019. Epub 2013 Oct 12.

PMID:
24177366
29.

Structural insight into LexA-RecA* interaction.

Kovačič L, Paulič N, Leonardi A, Hodnik V, Anderluh G, Podlesek Z, Žgur-Bertok D, Križaj I, Butala M.

Nucleic Acids Res. 2013 Nov;41(21):9901-10. doi: 10.1093/nar/gkt744. Epub 2013 Aug 21.

30.

Surface plasmon resonance for measuring interactions of proteins with lipid membranes.

Hodnik V, Anderluh G.

Methods Mol Biol. 2013;974:23-36. doi: 10.1007/978-1-62703-275-9_2.

PMID:
23404270
31.

Electroformation of giant unilamellar vesicles from erythrocyte membranes under low-salt conditions.

Mikelj M, Praper T, Demič R, Hodnik V, Turk T, Anderluh G.

Anal Biochem. 2013 Apr 15;435(2):174-80. doi: 10.1016/j.ab.2013.01.001. Epub 2013 Jan 17.

PMID:
23333270
32.

6-Arylpyrido[2,3-d]pyrimidines as novel ATP-competitive inhibitors of bacterial D-alanine:D-alanine ligase.

Škedelj V, Arsovska E, Tomašić T, Kroflič A, Hodnik V, Hrast M, Bešter-Rogač M, Anderluh G, Gobec S, Bostock J, Chopra I, O'Neill AJ, Randall C, Zega A.

PLoS One. 2012;7(8):e39922. doi: 10.1371/journal.pone.0039922. Epub 2012 Aug 2.

33.

Structures of lysenin reveal a shared evolutionary origin for pore-forming proteins and its mode of sphingomyelin recognition.

De Colibus L, Sonnen AF, Morris KJ, Siebert CA, Abrusci P, Plitzko J, Hodnik V, Leippe M, Volpi E, Anderluh G, Gilbert RJ.

Structure. 2012 Sep 5;20(9):1498-507. doi: 10.1016/j.str.2012.06.011. Epub 2012 Jul 19.

34.

Flexibility of the PDZ-binding motif in the micelle-bound form of Jagged-1 cytoplasmic tail.

Popovic M, Zlatev V, Hodnik V, Anderluh G, Felli IC, Pongor S, Pintar A.

Biochim Biophys Acta. 2012 Jul;1818(7):1706-16.

35.

In silico discovery and biophysical evaluation of novel 5-(2-hydroxybenzylidene) rhodanine inhibitors of DNA gyrase B.

Brvar M, Perdih A, Hodnik V, Renko M, Anderluh G, Jerala R, Solmajer T.

Bioorg Med Chem. 2012 Apr 15;20(8):2572-80. doi: 10.1016/j.bmc.2012.02.052. Epub 2012 Mar 3.

PMID:
22444877
36.

Significance of K(L/V)WX(I/L/V)P Epitope of the B2Gpi in Its (Patho)Physiologic Function.

Žager U, Lunder M, Hodnik V, Anderluh G, Čučnik S, Kveder T, Božič B.

EJIFCC. 2011 Dec 22;22(4):118-24. eCollection 2011 Dec.

37.

DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency.

Conrado RJ, Wu GC, Boock JT, Xu H, Chen SY, Lebar T, Turnšek J, Tomšič N, Avbelj M, Gaber R, Koprivnjak T, Mori J, Glavnik V, Vovk I, Benčina M, Hodnik V, Anderluh G, Dueber JE, Jerala R, DeLisa MP.

Nucleic Acids Res. 2012 Feb;40(4):1879-89. doi: 10.1093/nar/gkr888. Epub 2011 Oct 22.

38.

Immunochemical properties and pathological relevance of anti-β₂-glycoprotein I antibodies of different avidity.

Žager U, Irman Š, Lunder M, Škarabot M, Muševič I, Hodnik V, Anderluh G, Čučnik S, Kveder T, Rozman B, Božič B.

Int Immunol. 2011 Aug;23(8):511-8. doi: 10.1093/intimm/dxr043. Epub 2011 Jun 22.

PMID:
21697288
39.

Interconversion between bound and free conformations of LexA orchestrates the bacterial SOS response.

Butala M, Klose D, Hodnik V, Rems A, Podlesek Z, Klare JP, Anderluh G, Busby SJ, Steinhoff HJ, Zgur-Bertok D.

Nucleic Acids Res. 2011 Aug;39(15):6546-57. doi: 10.1093/nar/gkr265. Epub 2011 May 16.

40.

The interaction of Jagged-1 cytoplasmic tail with afadin PDZ domain is local, folding-independent, and tuned by phosphorylation.

Popovic M, Bella J, Zlatev V, Hodnik V, Anderluh G, Barlow PN, Pintar A, Pongor S.

J Mol Recognit. 2011 Mar-Apr;24(2):245-53. doi: 10.1002/jmr.1042.

PMID:
20586101
41.

Capture of intact liposomes on biacore sensor chips for protein-membrane interaction studies.

Hodnik V, Anderluh G.

Methods Mol Biol. 2010;627:201-11. doi: 10.1007/978-1-60761-670-2_13.

PMID:
20217623
42.

Interaction between oligomers of stefin B and amyloid-beta in vitro and in cells.

Skerget K, Taler-Vercic A, Bavdek A, Hodnik V, Ceru S, Tusek-Znidaric M, Kumm T, Pitsi D, Pompe-Novak M, Palumaa P, Soriano S, Kopitar-Jerala N, Turk V, Anderluh G, Zerovnik E.

J Biol Chem. 2010 Jan 29;285(5):3201-10. doi: 10.1074/jbc.M109.024620. Epub 2009 Dec 2.

43.

Regulation of cathepsin B activity by 2A2 monoclonal antibody.

Mirković B, Premzl A, Hodnik V, Doljak B, Jevnikar Z, Anderluh G, Kos J.

FEBS J. 2009 Sep;276(17):4739-51. doi: 10.1111/j.1742-4658.2009.07171.x. Epub 2009 Jul 27.

44.

Toxin detection by surface plasmon resonance.

Hodnik V, Anderluh G.

Sensors (Basel). 2009;9(3):1339-54. doi: 10.3390/s9031339. Epub 2009 Feb 26.

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