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Items: 1 to 50 of 71

1.

Author Correction: The Beta-adrenergic agonist, Ractopamine, increases skeletal muscle expression of Asparagine Synthetase as part of an integrated stress response gene program.

Brown D, Ryan K, Daniel Z, Mareko M, Talbot R, Moreton J, Giles TCB, Emes R, Hodgman C, Parr T, Brameld JM.

Sci Rep. 2019 Oct 28;9(1):15412. doi: 10.1038/s41598-019-43807-1.

2.

Gsmodutils: a python based framework for test-driven genome scale metabolic model development.

Gilbert J, Pearcy N, Norman R, Millat T, Winzer K, King J, Hodgman C, Minton N, Twycross J.

Bioinformatics. 2019 Sep 15;35(18):3397-3403. doi: 10.1093/bioinformatics/btz088.

3.

The Beta-adrenergic agonist, Ractopamine, increases skeletal muscle expression of Asparagine Synthetase as part of an integrated stress response gene program.

Brown D, Ryan K, Daniel Z, Mareko M, Talbot R, Moreton J, Giles TCB, Emes R, Hodgman C, Parr T, Brameld JM.

Sci Rep. 2018 Oct 29;8(1):15915. doi: 10.1038/s41598-018-34315-9. Erratum in: Sci Rep. 2019 Oct 28;9(1):15412.

4.

Author Correction: Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.

Giri J, Bhosale R, Huang G, Pandey BK, Parker H, Zappala S, Yang J, Dievart A, Bureau C, Ljung K, Price A, Rose T, Larrieu A, Mairhofer S, Sturrock CJ, White P, Dupuy L, Hawkesford M, Perin C, Liang W, Peret B, Hodgman CT, Lynch J, Wissuwa M, Zhang D, Pridmore T, Mooney SJ, Guiderdoni E, Swarup R, Bennett MJ.

Nat Commun. 2018 May 1;9(1):1810. doi: 10.1038/s41467-018-04280-y.

5.

Progress towards platform chemical production using Clostridium autoethanogenum.

Norman ROJ, Millat T, Winzer K, Minton NP, Hodgman C.

Biochem Soc Trans. 2018 Jun 19;46(3):523-535. doi: 10.1042/BST20170259. Epub 2018 Apr 17. Review.

PMID:
29666216
6.

Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.

Giri J, Bhosale R, Huang G, Pandey BK, Parker H, Zappala S, Yang J, Dievart A, Bureau C, Ljung K, Price A, Rose T, Larrieu A, Mairhofer S, Sturrock CJ, White P, Dupuy L, Hawkesford M, Perin C, Liang W, Peret B, Hodgman CT, Lynch J, Wissuwa M, Zhang D, Pridmore T, Mooney SJ, Guiderdoni E, Swarup R, Bennett MJ.

Nat Commun. 2018 Apr 12;9(1):1408. doi: 10.1038/s41467-018-03850-4. Erratum in: Nat Commun. 2018 May 1;9(1):1810.

7.

Analysis of Gene Regulatory Networks of Maize in Response to Nitrogen.

Jiang L, Ball G, Hodgman C, Coules A, Zhao H, Lu C.

Genes (Basel). 2018 Mar 8;9(3). pii: E151. doi: 10.3390/genes9030151.

8.

The logic of the floral transition: Reverse-engineering the switch controlling the identity of lateral organs.

Dinh JL, Farcot E, Hodgman C.

PLoS Comput Biol. 2017 Sep 20;13(9):e1005744. doi: 10.1371/journal.pcbi.1005744. eCollection 2017 Sep.

9.

Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize.

Oka R, Zicola J, Weber B, Anderson SN, Hodgman C, Gent JI, Wesselink JJ, Springer NM, Hoefsloot HCJ, Turck F, Stam M.

Genome Biol. 2017 Jul 21;18(1):137. doi: 10.1186/s13059-017-1273-4.

10.

A Transcriptomic Comparison of Two Bambara Groundnut Landraces under Dehydration Stress.

Khan F, Chai HH, Ajmera I, Hodgman C, Mayes S, Lu C.

Genes (Basel). 2017 Apr 18;8(4). pii: E121. doi: 10.3390/genes8040121.

11.

DNA Methylation and Chromatin Regulation during Fleshy Fruit Development and Ripening.

Gallusci P, Hodgman C, Teyssier E, Seymour GB.

Front Plant Sci. 2016 Jun 14;7:807. doi: 10.3389/fpls.2016.00807. eCollection 2016. Review.

12.

Yeast knockout library allows for efficient testing of genomic mutations for cell-free protein synthesis.

Schoborg JA, Clark LG, Choudhury A, Hodgman CE, Jewett MC.

Synth Syst Biotechnol. 2016 Apr 6;1(1):2-6. doi: 10.1016/j.synbio.2016.02.004. eCollection 2016 Mar.

13.

Whole genome sequence and manual annotation of Clostridium autoethanogenum, an industrially relevant bacterium.

Humphreys CM, McLean S, Schatschneider S, Millat T, Henstra AM, Annan FJ, Breitkopf R, Pander B, Piatek P, Rowe P, Wichlacz AT, Woods C, Norman R, Blom J, Goesman A, Hodgman C, Barrett D, Thomas NR, Winzer K, Minton NP.

BMC Genomics. 2015 Dec 21;16:1085. doi: 10.1186/s12864-015-2287-5.

14.

Modulation of Arabidopsis and monocot root architecture by CLAVATA3/EMBRYO SURROUNDING REGION 26 peptide.

Czyzewicz N, Shi CL, Vu LD, Van De Cotte B, Hodgman C, Butenko MA, De Smet I.

J Exp Bot. 2015 Aug;66(17):5229-43. doi: 10.1093/jxb/erv360. Epub 2015 Jul 17.

15.

Energizing eukaryotic cell-free protein synthesis with glucose metabolism.

Anderson MJ, Stark JC, Hodgman CE, Jewett MC.

FEBS Lett. 2015 Jul 8;589(15):1723-1727. doi: 10.1016/j.febslet.2015.05.045. Epub 2015 Jun 6.

16.

Lipidomic analysis of plasma samples from women with polycystic ovary syndrome.

Haoula Z, Ravipati S, Stekel DJ, Ortori CA, Hodgman C, Daykin C, Raine-Fenning N, Barrett DA, Atiomo W.

Metabolomics. 2015;11(3):657-666. Epub 2014 Aug 17.

17.

A machine learning heuristic to identify biologically relevant and minimal biomarker panels from omics data.

Swan AL, Stekel DJ, Hodgman C, Allaway D, Alqahtani MH, Mobasheri A, Bacardit J.

BMC Genomics. 2015;16 Suppl 1:S2. doi: 10.1186/1471-2164-16-S1-S2. Epub 2015 Jan 15.

18.

Characterizing IGR IRES-mediated translation initiation for use in yeast cell-free protein synthesis.

Hodgman CE, Jewett MC.

N Biotechnol. 2014 Sep 25;31(5):499-505. doi: 10.1016/j.nbt.2014.07.001. Epub 2014 Jul 10.

PMID:
25017988
19.

Validation of proteomic biomarkers previously found to be differentially expressed in women with polycystic ovary syndrome: a cross-sectional study.

Haoula Z, Shaw B, Daykin C, Hodgman C, Layfield R, Atiomo W.

Gynecol Endocrinol. 2014 Mar;30(3):213-6. doi: 10.3109/09513590.2013.871520. Epub 2014 Jan 7.

PMID:
24397393
20.

Metabolic differences in ripening of Solanum lycopersicum 'Ailsa Craig' and three monogenic mutants.

Beisken S, Earll M, Baxter C, Portwood D, Ament Z, Kende A, Hodgman C, Seymour G, Smith R, Fraser P, Seymour M, Salek RM, Steinbeck C.

Sci Data. 2014 Sep 16;1:140029. doi: 10.1038/sdata.2014.29. eCollection 2014.

21.

Substrate replenishment and byproduct removal improve yeast cell-free protein synthesis.

Schoborg JA, Hodgman CE, Anderson MJ, Jewett MC.

Biotechnol J. 2014 May;9(5):630-40. doi: 10.1002/biot.201300383. Epub 2014 Jan 14.

PMID:
24323955
22.

Optimized extract preparation methods and reaction conditions for improved yeast cell-free protein synthesis.

Hodgman CE, Jewett MC.

Biotechnol Bioeng. 2013 Oct;110(10):2643-54. doi: 10.1002/bit.24942. Epub 2013 Jul 7.

PMID:
23832321
23.

Inference of the genetic network regulating lateral root initiation in Arabidopsis thaliana.

Muraro D, Voβ U, Wilson M, Bennett M, Byrne H, De Smet I, Hodgman C, King J.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Jan-Feb;10(1):50-60. doi: 10.1109/TCBB.2013.3.

PMID:
23702543
24.

Network inference analysis identifies an APRR2-like gene linked to pigment accumulation in tomato and pepper fruits.

Pan Y, Bradley G, Pyke K, Ball G, Lu C, Fray R, Marshall A, Jayasuta S, Baxter C, van Wijk R, Boyden L, Cade R, Chapman NH, Fraser PD, Hodgman C, Seymour GB.

Plant Physiol. 2013 Mar;161(3):1476-85. doi: 10.1104/pp.112.212654. Epub 2013 Jan 4.

25.

Tackling drought stress: receptor-like kinases present new approaches.

Marshall A, Aalen RB, Audenaert D, Beeckman T, Broadley MR, Butenko MA, Caño-Delgado AI, de Vries S, Dresselhaus T, Felix G, Graham NS, Foulkes J, Granier C, Greb T, Grossniklaus U, Hammond JP, Heidstra R, Hodgman C, Hothorn M, Inzé D, Ostergaard L, Russinova E, Simon R, Skirycz A, Stahl Y, Zipfel C, De Smet I.

Plant Cell. 2012 Jun;24(6):2262-78. doi: 10.1105/tpc.112.096677. Epub 2012 Jun 12. Review.

26.

Cell-free protein synthesis: applications come of age.

Carlson ED, Gan R, Hodgman CE, Jewett MC.

Biotechnol Adv. 2012 Sep-Oct;30(5):1185-94. doi: 10.1016/j.biotechadv.2011.09.016. Epub 2011 Oct 8. Review.

27.

Cell-free synthetic biology: thinking outside the cell.

Hodgman CE, Jewett MC.

Metab Eng. 2012 May;14(3):261-9. doi: 10.1016/j.ymben.2011.09.002. Epub 2011 Sep 18. Review.

28.

Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis.

Lysenko A, Defoin-Platel M, Hassani-Pak K, Taubert J, Hodgman C, Rawlings CJ, Saqi M.

BMC Bioinformatics. 2011 May 25;12:203. doi: 10.1186/1471-2105-12-203.

29.

Reduction of off-flavor generation in soybean homogenates: a mathematical model.

Mellor N, Bligh F, Chandler I, Hodgman C.

J Food Sci. 2010 Sep;75(7):R131-8. doi: 10.1111/j.1750-3841.2010.01733.x. Epub 2010 Aug 23. Review.

30.

Parameter estimation using meta-heuristics in systems biology: a comprehensive review.

Sun J, Garibaldi JM, Hodgman C.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Jan-Feb;9(1):185-202. doi: 10.1109/TCBB.2011.63. Epub 2011 Mar 22. Review.

PMID:
21464505
31.

Unraveling the evolution of auxin signaling.

De Smet I, Voss U, Lau S, Wilson M, Shao N, Timme RE, Swarup R, Kerr I, Hodgman C, Bock R, Bennett M, Jürgens G, Beeckman T.

Plant Physiol. 2011 Jan;155(1):209-21. doi: 10.1104/pp.110.168161. Epub 2010 Nov 16.

32.

OsCAND1 is required for crown root emergence in rice.

Wang XF, He FF, Ma XX, Mao CZ, Hodgman C, Lu CG, Wu P.

Mol Plant. 2011 Mar;4(2):289-99. doi: 10.1093/mp/ssq068. Epub 2010 Oct 26.

33.

Occurrence of a quadruplex motif in a unique insert within exon C of the bovine estrogen receptor alpha gene (ESR1).

Derecka K, Balkwill GD, Garner TP, Hodgman C, Flint AP, Searle MS.

Biochemistry. 2010 Sep 7;49(35):7625-33. doi: 10.1021/bi100804f.

PMID:
20715834
34.

Repression of translation of human estrogen receptor alpha by G-quadruplex formation.

Balkwill GD, Derecka K, Garner TP, Hodgman C, Flint AP, Searle MS.

Biochemistry. 2009 Dec 8;48(48):11487-95. doi: 10.1021/bi901420k.

PMID:
19860473
35.
36.

Integrative biology--the way forward.

Hodgman C.

Brief Bioinform. 2007 Jul;8(4):208-9. Epub 2007 Jul 18. No abstract available.

PMID:
17640922
37.

Psychosis in adolescence.

Hodgman CH.

Adolesc Med Clin. 2006 Feb;17(1):131-45. Review.

PMID:
16473297
38.

A call for help in the underserved nation of Seychelles.

Hodgman C.

J Child Adolesc Psychiatr Nurs. 2005 Oct-Dec;18(4):147. No abstract available.

PMID:
16236096
39.

Editorial: The informatics of post-translational modification and its implications for systems biology.

Hodgman C.

Brief Bioinform. 2004 Jun;5(2):104-5. No abstract available.

PMID:
15260891
40.

An information-flow model of the pharmaceutical industry.

Hodgman C.

Drug Discov Today. 2001 Dec 15;6(24):1256-1258. No abstract available.

PMID:
11738963
41.

Medication for the management of anxiety disorders in children and adolescents.

Williams T, Hodgman C.

Pediatr Ann. 2001 Mar;30(3):146-53. Review. No abstract available.

PMID:
11257944
42.

The "medicalization" of pediatric mental illness.

Hodgman CH.

Pediatr Ann. 2001 Mar;30(3):126, 128. No abstract available.

PMID:
11257941
43.

INTERACT: an object oriented protein-protein interaction database.

Eilbeck K, Brass A, Paton N, Hodgman C.

Proc Int Conf Intell Syst Mol Biol. 1999:87-94.

PMID:
10786290
44.
45.

Adolescent psychiatric conditions.

Hodgman CH.

Compr Ther. 1996 Dec;22(12):796-801. Review. No abstract available.

PMID:
9030459
46.

Identification of the homologous beige and Chediak-Higashi syndrome genes.

Barbosa MD, Nguyen QA, Tchernev VT, Ashley JA, Detter JC, Blaydes SM, Brandt SJ, Chotai D, Hodgman C, Solari RC, Lovett M, Kingsmore SF.

Nature. 1996 Jul 18;382(6588):262-5. Erratum in: Nature 1997 Jan 2;385(6611):97.

47.

Conversion and somatization in pediatrics.

Hodgman CH.

Pediatr Rev. 1995 Jan;16(1):29-34. No abstract available.

PMID:
7855023
48.

Reported sequence homology between Alzheimer amyloid770 and the MRC OX-2 antigen does not predict function.

Richards SJ, Hodgman C, Sharpe M.

Brain Res Bull. 1995;38(3):305-6. No abstract available.

PMID:
7496825
49.
50.

Transition from child-centered to adult health-care systems for adolescents with chronic conditions. A position paper of the Society for Adolescent Medicine.

Blum RW, Garell D, Hodgman CH, Jorissen TW, Okinow NA, Orr DP, Slap GB.

J Adolesc Health. 1993 Nov;14(7):570-6. No abstract available.

PMID:
8312295

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