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Seminal roots of wild and cultivated barley differentially respond to osmotic stress in gene expression, suberization, and hydraulic conductivity.

Kreszies T, Eggels S, Kreszies V, Osthoff A, Shellakkutti N, Baldauf JA, Zeisler-Diehl VV, Hochholdinger F, Ranathunge K, Schreiber L.

Plant Cell Environ. 2019 Nov 24. doi: 10.1111/pce.13675. [Epub ahead of print]


Shared genetic control of root system architecture between Zea mays and Sorghum bicolor.

Zheng Z, Hey S, Jubery T, Liu H, Yang Y, Coffey L, Miao C, Sigmon B, Schnable J, Hochholdinger F, Ganapathysubramanian B, Schnable PS.

Plant Physiol. 2019 Nov 18. pii: pp.00752.2019. doi: 10.1104/pp.19.00752. [Epub ahead of print]


Robust non-syntenic gene expression patterns in diverse maize hybrids along root development.

Baldauf JA, Vedder L, Schoof H, Hochholdinger F.

J Exp Bot. 2019 Oct 22. pii: erz452. doi: 10.1093/jxb/erz452. [Epub ahead of print]


Transcriptomic reprogramming of barley seminal roots by combined water deficit and salt stress.

Osthoff A, Donà Dalle Rose P, Baldauf JA, Piepho HP, Hochholdinger F.

BMC Genomics. 2019 Apr 29;20(1):325. doi: 10.1186/s12864-019-5634-0.


Plasticity of Lateral Root Branching in Maize.

Yu P, Hochholdinger F, Li C.

Front Plant Sci. 2019 Mar 29;10:363. doi: 10.3389/fpls.2019.00363. eCollection 2019. Review.


Cell Type-Specific Transcriptomics of Lateral Root Formation and Plasticity.

Kortz A, Hochholdinger F, Yu P.

Front Plant Sci. 2019 Feb 12;10:21. doi: 10.3389/fpls.2019.00021. eCollection 2019. Review.


Estimating the importance of maize root hairs in low phosphorus conditions and under drought.

Klamer F, Vogel F, Li X, Bremer H, Neumann G, Neuhäuser B, Hochholdinger F, Ludewig U.

Ann Bot. 2019 Nov 27;124(6):961-968. doi: 10.1093/aob/mcz011.


The Role of Host Genetic Signatures on Root-Microbe Interactions in the Rhizosphere and Endosphere.

Yu P, Hochholdinger F.

Front Plant Sci. 2018 Dec 19;9:1896. doi: 10.3389/fpls.2018.01896. eCollection 2018. Review.


Heterosis in plants.

Hochholdinger F, Baldauf JA.

Curr Biol. 2018 Sep 24;28(18):R1089-R1092. doi: 10.1016/j.cub.2018.06.041.


Ethylenediurea (EDU) mitigates the negative effects of ozone in rice: Insights into its mode of action.

Ashrafuzzaman M, Haque Z, Ali B, Mathew B, Yu P, Hochholdinger F, de Abreu Neto JB, McGillen MR, Ensikat HJ, Manning WJ, Frei M.

Plant Cell Environ. 2018 Dec;41(12):2882-2898. doi: 10.1111/pce.13423. Epub 2018 Sep 17.


Osmotic stress enhances suberization of apoplastic barriers in barley seminal roots: analysis of chemical, transcriptomic and physiological responses.

Kreszies T, Shellakkutti N, Osthoff A, Yu P, Baldauf JA, Zeisler-Diehl VV, Ranathunge K, Hochholdinger F, Schreiber L.

New Phytol. 2019 Jan;221(1):180-194. doi: 10.1111/nph.15351. Epub 2018 Jul 28.


Proteomics of Maize Root Development.

Hochholdinger F, Marcon C, Baldauf JA, Yu P, Frey FP.

Front Plant Sci. 2018 Mar 5;9:143. doi: 10.3389/fpls.2018.00143. eCollection 2018. Review.


Single-Parent Expression Is a General Mechanism Driving Extensive Complementation of Non-syntenic Genes in Maize Hybrids.

Baldauf JA, Marcon C, Lithio A, Vedder L, Altrogge L, Piepho HP, Schoof H, Nettleton D, Hochholdinger F.

Curr Biol. 2018 Feb 5;28(3):431-437.e4. doi: 10.1016/j.cub.2017.12.027. Epub 2018 Jan 18.


Genetic Control of Root System Development in Maize.

Hochholdinger F, Yu P, Marcon C.

Trends Plant Sci. 2018 Jan;23(1):79-88. doi: 10.1016/j.tplants.2017.10.004. Epub 2017 Nov 20. Review.


Root type and soil phosphate determine the taxonomic landscape of colonizing fungi and the transcriptome of field-grown maize roots.

Yu P, Wang C, Baldauf JA, Tai H, Gutjahr C, Hochholdinger F, Li C.

New Phytol. 2018 Feb;217(3):1240-1253. doi: 10.1111/nph.14893. Epub 2017 Nov 20.


Complexity and specificity of the maize (Zea mays L.) root hair transcriptome.

Hey S, Baldauf J, Opitz N, Lithio A, Pasha A, Provart N, Nettleton D, Hochholdinger F.

J Exp Bot. 2017 Apr 1;68(9):2175-2185. doi: 10.1093/jxb/erx104.


Non-syntenic genes drive RTCS-dependent regulation of the embryo transcriptome during formation of seminal root primordia in maize (Zea mays L.).

Tai H, Opitz N, Lithio A, Lu X, Nettleton D, Hochholdinger F.

J Exp Bot. 2017 Jan 1;68(3):403-414. doi: 10.1093/jxb/erw422.


Stability of Single-Parent Gene Expression Complementation in Maize Hybrids upon Water Deficit Stress.

Marcon C, Paschold A, Malik WA, Lithio A, Baldauf JA, Altrogge L, Opitz N, Lanz C, Schoof H, Nettleton D, Piepho HP, Hochholdinger F.

Plant Physiol. 2017 Feb;173(2):1247-1257. doi: 10.1104/pp.16.01045. Epub 2016 Dec 20.


Genetic Control of Lateral Root Formation in Cereals.

Yu P, Gutjahr C, Li C, Hochholdinger F.

Trends Plant Sci. 2016 Nov;21(11):951-961. doi: 10.1016/j.tplants.2016.07.011. Epub 2016 Aug 12. Review.


Characterization of maize roothairless6 which encodes a D-type cellulose synthase and controls the switch from bulge formation to tip growth.

Li L, Hey S, Liu S, Liu Q, McNinch C, Hu HC, Wen TJ, Marcon C, Paschold A, Bruce W, Schnable PS, Hochholdinger F.

Sci Rep. 2016 Oct 6;6:34395. doi: 10.1038/srep34395.


Untapping root system architecture for crop improvement.

Hochholdinger F.

J Exp Bot. 2016 Aug;67(15):4431-3. doi: 10.1093/jxb/erw262. No abstract available.


Grasses suppress shoot-borne roots to conserve water during drought.

Sebastian J, Yee MC, Goudinho Viana W, Rellán-Álvarez R, Feldman M, Priest HD, Trontin C, Lee T, Jiang H, Baxter I, Mockler TC, Hochholdinger F, Brutnell TP, Dinneny JR.

Proc Natl Acad Sci U S A. 2016 Aug 2;113(31):8861-6. doi: 10.1073/pnas.1604021113. Epub 2016 Jul 15.


Nonsyntenic Genes Drive Tissue-Specific Dynamics of Differential, Nonadditive, and Allelic Expression Patterns in Maize Hybrids.

Baldauf JA, Marcon C, Paschold A, Hochholdinger F.

Plant Physiol. 2016 Jun;171(2):1144-55. doi: 10.1104/pp.16.00262. Epub 2016 Apr 19.


An improved procedure for isolation of high-quality RNA from nematode-infected Arabidopsis roots through laser capture microdissection.

Anjam MS, Ludwig Y, Hochholdinger F, Miyaura C, Inada M, Siddique S, Grundler FM.

Plant Methods. 2016 Apr 26;12:25. doi: 10.1186/s13007-016-0123-9. eCollection 2016.


Root Type-Specific Reprogramming of Maize Pericycle Transcriptomes by Local High Nitrate Results in Disparate Lateral Root Branching Patterns.

Yu P, Baldauf JA, Lithio A, Marcon C, Nettleton D, Li C, Hochholdinger F.

Plant Physiol. 2016 Mar;170(3):1783-98. doi: 10.1104/pp.15.01885. Epub 2016 Jan 25.


Conserved and unique features of the homeologous maize Aux/IAA proteins ROOTLESS WITH UNDETECTABLE MERISTEM 1 and RUM1-like 1.

Zhang Y, Marcon C, Tai H, von Behrens I, Ludwig Y, Hey S, Berendzen KW, Hochholdinger F.

J Exp Bot. 2016 Feb;67(4):1137-47. doi: 10.1093/jxb/erv519. Epub 2015 Dec 15.


Transcriptomic and anatomical complexity of primary, seminal, and crown roots highlight root type-specific functional diversity in maize (Zea mays L.).

Tai H, Lu X, Opitz N, Marcon C, Paschold A, Lithio A, Nettleton D, Hochholdinger F.

J Exp Bot. 2016 Feb;67(4):1123-35. doi: 10.1093/jxb/erv513. Epub 2015 Nov 30.


LOB Domain Proteins: Beyond Lateral Organ Boundaries.

Xu C, Luo F, Hochholdinger F.

Trends Plant Sci. 2016 Feb;21(2):159-167. doi: 10.1016/j.tplants.2015.10.010. Epub 2015 Nov 23. Review.


Extensive tissue-specific transcriptomic plasticity in maize primary roots upon water deficit.

Opitz N, Marcon C, Paschold A, Malik WA, Lithio A, Brandt R, Piepho HP, Nettleton D, Hochholdinger F.

J Exp Bot. 2016 Feb;67(4):1095-107. doi: 10.1093/jxb/erv453. Epub 2015 Oct 13.


Root-type-specific plasticity in response to localized high nitrate supply in maize (Zea mays).

Yu P, Hochholdinger F, Li C.

Ann Bot. 2015 Oct;116(5):751-62. doi: 10.1093/aob/mcv127. Epub 2015 Sep 7.


The Aux/IAA gene rum1 involved in seminal and lateral root formation controls vascular patterning in maize (Zea mays L.) primary roots.

Zhang Y, Paschold A, Marcon C, Liu S, Tai H, Nestler J, Yeh CT, Opitz N, Lanz C, Schnable PS, Hochholdinger F.

J Exp Bot. 2015 Sep;66(19):6081. doi: 10.1093/jxb/erv354. Epub 2015 Jul 23. No abstract available.


LATERAL ROOT PRIMORDIA 1 of maize acts as a transcriptional activator in auxin signalling downstream of the Aux/IAA gene rootless with undetectable meristem 1.

Zhang Y, von Behrens I, Zimmermann R, Ludwig Y, Hey S, Hochholdinger F.

J Exp Bot. 2015 Jul;66(13):3855-63. doi: 10.1093/jxb/erv187. Epub 2015 Apr 23.


Cooperative action of the paralogous maize lateral organ boundaries (LOB) domain proteins RTCS and RTCL in shoot-borne root formation.

Xu C, Tai H, Saleem M, Ludwig Y, Majer C, Berendzen KW, Nagel KA, Wojciechowski T, Meeley RB, Taramino G, Hochholdinger F.

New Phytol. 2015 Sep;207(4):1123-33. doi: 10.1111/nph.13420. Epub 2015 Apr 22.


A high-resolution tissue-specific proteome and phosphoproteome atlas of maize primary roots reveals functional gradients along the root axes.

Marcon C, Malik WA, Walley JW, Shen Z, Paschold A, Smith LG, Piepho HP, Briggs SP, Hochholdinger F.

Plant Physiol. 2015 May;168(1):233-46. doi: 10.1104/pp.15.00138. Epub 2015 Mar 16.


Nonsyntenic genes drive highly dynamic complementation of gene expression in maize hybrids.

Paschold A, Larson NB, Marcon C, Schnable JC, Yeh CT, Lanz C, Nettleton D, Piepho HP, Schnable PS, Hochholdinger F.

Plant Cell. 2014 Oct;26(10):3939-48. doi: 10.1105/tpc.114.130948. Epub 2014 Oct 14.


Diversity of stability, localization, interaction and control of downstream gene activity in the Maize Aux/IAA protein family.

Ludwig Y, Berendzen KW, Xu C, Piepho HP, Hochholdinger F.

PLoS One. 2014 Sep 9;9(9):e107346. doi: 10.1371/journal.pone.0107346. eCollection 2014.


Transcriptomic complexity in young maize primary roots in response to low water potentials.

Opitz N, Paschold A, Marcon C, Malik WA, Lanz C, Piepho HP, Hochholdinger F.

BMC Genomics. 2014 Aug 29;15:741. doi: 10.1186/1471-2164-15-741.


Phenotypic plasticity of the maize root system in response to heterogeneous nitrogen availability.

Yu P, White PJ, Hochholdinger F, Li C.

Planta. 2014 Oct;240(4):667-78. doi: 10.1007/s00425-014-2150-y. Epub 2014 Aug 21. Review.


The Aux/IAA gene rum1 involved in seminal and lateral root formation controls vascular patterning in maize (Zea mays L.) primary roots.

Zhang Y, Paschold A, Marcon C, Liu S, Tai H, Nestler J, Yeh CT, Opitz N, Lanz C, Schnable PS, Hochholdinger F.

J Exp Bot. 2014 Sep;65(17):4919-30. doi: 10.1093/jxb/eru249. Epub 2014 Jun 13. Erratum in: J Exp Bot. 2015 Sep;66(19):6081.


Association analysis of single nucleotide polymorphisms in candidate genes with root traits in maize (Zea mays L.) seedlings.

Kumar B, Abdel-Ghani AH, Pace J, Reyes-Matamoros J, Hochholdinger F, Lübberstedt T.

Plant Sci. 2014 Jul;224:9-19. doi: 10.1016/j.plantsci.2014.03.019. Epub 2014 Apr 3.


Roothairless5, which functions in maize (Zea mays L.) root hair initiation and elongation encodes a monocot-specific NADPH oxidase.

Nestler J, Liu S, Wen TJ, Paschold A, Marcon C, Tang HM, Li D, Li L, Meeley RB, Sakai H, Bruce W, Schnable PS, Hochholdinger F.

Plant J. 2014 Sep;79(5):729-40. doi: 10.1111/tpj.12578. Epub 2014 Jul 15.


The maize (Zea mays L.) AUXIN/INDOLE-3-ACETIC ACID gene family: phylogeny, synteny, and unique root-type and tissue-specific expression patterns during development.

Ludwig Y, Zhang Y, Hochholdinger F.

PLoS One. 2013 Nov 1;8(11):e78859. doi: 10.1371/journal.pone.0078859. eCollection 2013.


Laser microdissection of plant cells.

Ludwig Y, Hochholdinger F.

Methods Mol Biol. 2014;1080:249-58. doi: 10.1007/978-1-62703-643-6_21.


Comparative transcriptome profiling of maize coleoptilar nodes during shoot-borne root initiation.

Muthreich N, Majer C, Beatty M, Paschold A, Schützenmeister A, Fu Y, Malik WA, Schnable PS, Piepho HP, Sakai H, Hochholdinger F.

Plant Physiol. 2013 Sep;163(1):419-30. doi: 10.1104/pp.113.221481. Epub 2013 Jul 10.


Heterosis-associated proteome analyses of maize (Zea mays L.) seminal roots by quantitative label-free LC-MS.

Marcon C, Lamkemeyer T, Malik WA, Ungrue D, Piepho HP, Hochholdinger F.

J Proteomics. 2013 Nov 20;93:295-302. doi: 10.1016/j.jprot.2013.04.015. Epub 2013 Apr 19.


Lateral root development in the maize (Zea mays) lateral rootless1 mutant.

Husakova E, Hochholdinger F, Soukup A.

Ann Bot. 2013 Jul;112(2):417-28. doi: 10.1093/aob/mct043. Epub 2013 Feb 28.


Genetic control of root organogenesis in cereals.

Marcon C, Paschold A, Hochholdinger F.

Methods Mol Biol. 2013;959:69-81. doi: 10.1007/978-1-62703-221-6_4.


Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents.

Paschold A, Jia Y, Marcon C, Lund S, Larson NB, Yeh CT, Ossowski S, Lanz C, Nettleton D, Schnable PS, Hochholdinger F.

Genome Res. 2012 Dec;22(12):2445-54. doi: 10.1101/gr.138461.112. Epub 2012 Oct 19.


Comparative analyses of three legume species reveals conserved and unique root extracellular proteins.

Liao C, Hochholdinger F, Li C.

Proteomics. 2012 Nov;12(21):3219-28. doi: 10.1002/pmic.201100629. Epub 2012 Oct 1.


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