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Items: 1 to 50 of 69

1.

If machines can learn, who needs scientists?

Hoch JC.

J Magn Reson. 2019 Sep;306:162-166. doi: 10.1016/j.jmr.2019.07.044. Epub 2019 Jul 16.

PMID:
31362904
2.

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB).

Adams PD, Afonine PV, Baskaran K, Berman HM, Berrisford J, Bricogne G, Brown DG, Burley SK, Chen M, Feng Z, Flensburg C, Gutmanas A, Hoch JC, Ikegawa Y, Kengaku Y, Krissinel E, Kurisu G, Liang Y, Liebschner D, Mak L, Markley JL, Moriarty NW, Murshudov GN, Noble M, Peisach E, Persikova I, Poon BK, Sobolev OV, Ulrich EL, Velankar S, Vonrhein C, Westbrook J, Wojdyr M, Yokochi M, Young JY.

Acta Crystallogr D Struct Biol. 2019 Apr 1;75(Pt 4):451-454. doi: 10.1107/S2059798319004522. Epub 2019 Apr 8. No abstract available.

PMID:
30988261
3.

Concomitant disorder and high-affinity zinc binding in the human zinc- and iron-regulated transport protein 4 intracellular loop.

Bafaro EM, Maciejewski MW, Hoch JC, Dempski RE.

Protein Sci. 2019 May;28(5):868-880. doi: 10.1002/pro.3591. Epub 2019 Mar 12.

PMID:
30793391
4.

NMR-STAR: comprehensive ontology for representing, archiving and exchanging data from nuclear magnetic resonance spectroscopic experiments.

Ulrich EL, Baskaran K, Dashti H, Ioannidis YE, Livny M, Romero PR, Maziuk D, Wedell JR, Yao H, Eghbalnia HR, Hoch JC, Markley JL.

J Biomol NMR. 2019 Feb;73(1-2):5-9. doi: 10.1007/s10858-018-0220-3. Epub 2018 Dec 22. Review.

5.

Non-Uniform Sampling for All: More NMR Spectral Quality, Less Measurement Time.

Delaglio F, Walker GS, Farley KA, Sharma R, Hoch JC, Arbogast LW, Brinson RG, Marino JP.

Am Pharm Rev. 2017 May/Jun;20(4). pii: 339681. Epub 2017 Jun 30. No abstract available.

6.

Nonuniform sampling in multidimensional NMR for improving spectral sensitivity.

Zambrello MA, Schuyler AD, Maciejewski MW, Delaglio F, Bezsonova I, Hoch JC.

Methods. 2018 Apr 1;138-139:62-68. doi: 10.1016/j.ymeth.2018.03.001. Epub 2018 Mar 6.

7.

Practical Nonuniform Sampling and Non-Fourier Spectral Reconstruction for Multidimensional NMR.

Maciejewski MW, Schuyler AD, Hoch JC.

Methods Mol Biol. 2018;1688:341-352. doi: 10.1007/978-1-4939-7386-6_15.

8.

Robust and transferable quantification of NMR spectral quality using IROC analysis.

Zambrello MA, Maciejewski MW, Schuyler AD, Weatherby G, Hoch JC.

J Magn Reson. 2017 Dec;285:37-46. doi: 10.1016/j.jmr.2017.10.005. Epub 2017 Oct 16.

9.

NMRbox: A Resource for Biomolecular NMR Computation.

Maciejewski MW, Schuyler AD, Gryk MR, Moraru II, Romero PR, Ulrich EL, Eghbalnia HR, Livny M, Delaglio F, Hoch JC.

Biophys J. 2017 Apr 25;112(8):1529-1534. doi: 10.1016/j.bpj.2017.03.011.

10.

Beyond Fourier.

Hoch JC.

J Magn Reson. 2017 Oct;283:117-123. doi: 10.1016/j.jmr.2017.03.017. Epub 2017 Mar 27.

11.

Correction: Sparse sampling methods in multidimensional NMR.

Mobli M, Maciejewski MW, Schuyler AD, Stern AS, Hoch JC.

Phys Chem Chem Phys. 2016 Jul 28;18(28):19482. doi: 10.1039/c6cp90157c. Epub 2016 Jul 1.

PMID:
27364917
12.

A new approach to compressed sensing for NMR.

Stern AS, Hoch JC.

Magn Reson Chem. 2015 Nov;53(11):908-12. doi: 10.1002/mrc.4287. Epub 2015 Aug 10.

13.

CONNJUR R: an annotation strategy for fostering reproducibility in bio-NMR-protein spectral assignment.

Fenwick M, Hoch JC, Ulrich E, Gryk MR.

J Biomol NMR. 2015 Oct;63(2):141-50. doi: 10.1007/s10858-015-9964-1. Epub 2015 Aug 8.

14.

Sensitivity of nonuniform sampling NMR.

Palmer MR, Suiter CL, Henry GE, Rovnyak J, Hoch JC, Polenova T, Rovnyak D.

J Phys Chem B. 2015 Jun 4;119(22):6502-15. doi: 10.1021/jp5126415. Epub 2015 May 18.

15.

Nonuniform sampling of hypercomplex multidimensional NMR experiments: Dimensionality, quadrature phase and randomization.

Schuyler AD, Maciejewski MW, Stern AS, Hoch JC.

J Magn Reson. 2015 May;254:121-30. doi: 10.1016/j.jmr.2015.02.015. Epub 2015 Mar 10.

16.

Nonuniform sampling and non-Fourier signal processing methods in multidimensional NMR.

Mobli M, Hoch JC.

Prog Nucl Magn Reson Spectrosc. 2014 Nov;83:21-41. doi: 10.1016/j.pnmrs.2014.09.002. Epub 2014 Oct 13. Review. Erratum in: Prog Nucl Magn Reson Spectrosc. 2015 Apr;86-87;80.

17.

Sensitivity gains, linearity, and spectral reproducibility in nonuniformly sampled multidimensional MAS NMR spectra of high dynamic range.

Suiter CL, Paramasivam S, Hou G, Sun S, Rice D, Hoch JC, Rovnyak D, Polenova T.

J Biomol NMR. 2014 Jun;59(2):57-73. doi: 10.1007/s10858-014-9824-4. Epub 2014 Apr 22.

18.

The indelible mark of computation on bio-NMR.

Hoch JC, Billeter M.

J Biomol NMR. 2014 Apr;58(4):231-2. doi: 10.1007/s10858-014-9825-3. No abstract available.

PMID:
24691942
19.

Nonuniform sampling and maximum entropy reconstruction in multidimensional NMR.

Hoch JC, Maciejewski MW, Mobli M, Schuyler AD, Stern AS.

Acc Chem Res. 2014 Feb 18;47(2):708-17. doi: 10.1021/ar400244v. Epub 2014 Jan 9.

20.

Formalism for hypercomplex multidimensional NMR employing partial-component subsampling.

Schuyler AD, Maciejewski MW, Stern AS, Hoch JC.

J Magn Reson. 2013 Feb;227:20-4. doi: 10.1016/j.jmr.2012.11.019. Epub 2012 Nov 29.

21.

A time-saving strategy for MAS NMR spectroscopy by combining nonuniform sampling and paramagnetic relaxation assisted condensed data collection.

Sun S, Yan S, Guo C, Li M, Hoch JC, Williams JC, Polenova T.

J Phys Chem B. 2012 Nov 26;116(46):13585-96. doi: 10.1021/jp3005794. Epub 2012 Nov 12.

22.

In support of the BMRB.

Markley JL, Akutsu H, Asakura T, Baldus M, Boelens R, Bonvin A, Kaptein R, Bax A, Bezsonova I, Gryk MR, Hoch JC, Korzhnev DM, Maciejewski MW, Case D, Chazin WJ, Cross TA, Dames S, Kessler H, Lange O, Madl T, Reif B, Sattler M, Eliezer D, Fersht A, Forman-Kay J, Kay LE, Fraser J, Gross J, Kortemme T, Sali A, Fujiwara T, Gardner K, Luo X, Rizo-Rey J, Rosen M, Gil RR, Ho C, Rule G, Gronenborn AM, Ishima R, Klein-Seetharaman J, Tang P, van der Wel P, Xu Y, Grzesiek S, Hiller S, Seelig J, Laue ED, Mott H, Nietlispach D, Barsukov I, Lian LY, Middleton D, Blumenschein T, Moore G, Campbell I, Schnell J, Vakonakis IJ, Watts A, Conte MR, Mason J, Pfuhl M, Sanderson MR, Craven J, Williamson M, Dominguez C, Roberts G, Günther U, Overduin M, Werner J, Williamson P, Blindauer C, Crump M, Driscoll P, Frenkiel T, Golovanov A, Matthews S, Parkinson J, Uhrin D, Williams M, Neuhaus D, Oschkinat H, Ramos A, Shaw DE, Steinbeck C, Vendruscolo M, Vuister GW, Walters KJ, Weinstein H, Wüthrich K, Yokoyama S.

Nat Struct Mol Biol. 2012 Sep;19(9):854-60. doi: 10.1038/nsmb.2371. No abstract available.

PMID:
22955930
23.

Enhanced sensitivity by nonuniform sampling enables multidimensional MAS NMR spectroscopy of protein assemblies.

Paramasivam S, Suiter CL, Hou G, Sun S, Palmer M, Hoch JC, Rovnyak D, Polenova T.

J Phys Chem B. 2012 Jun 28;116(25):7416-27. doi: 10.1021/jp3032786. Epub 2012 Jun 18.

24.

Sparse sampling methods in multidimensional NMR.

Mobli M, Maciejewski MW, Schuyler AD, Stern AS, Hoch JC.

Phys Chem Chem Phys. 2012 Aug 21;14(31):10835-43. doi: 10.1039/c2cp40174f. Epub 2012 Apr 5.

25.

(1)H, (13)C, and (15)N chemical shift assignments for PfPMT, a phosphoethanolamine methyltransferase from Plasmodium falciparum.

Bezsonova I, Rujan I, Bobenchik AM, Gorbatyuk V, Maciejewski MW, Gorbatyuk O, Hao B, Arthanari H, Mamoun CB, Hoch JC.

Biomol NMR Assign. 2013 Apr;7(1):17-20. doi: 10.1007/s12104-012-9372-3. Epub 2012 Mar 6.

26.

N-terminal Dbl domain of the RhoGEF, Kalirin.

Gorbatyuk VY, Schiller MR, Gorbatyuk OI, Barwinski M, Hoch JC.

J Biomol NMR. 2012 Mar;52(3):269-76. doi: 10.1007/s10858-012-9605-x. No abstract available.

27.

Random phase detection in multidimensional NMR.

Maciejewski MW, Fenwick M, Schuyler AD, Stern AS, Gorbatyuk V, Hoch JC.

Proc Natl Acad Sci U S A. 2011 Oct 4;108(40):16640-4. doi: 10.1073/pnas.1103723108. Epub 2011 Sep 26.

28.

Data sampling in multidimensional NMR: fundamentals and strategies.

Maciejewski MW, Mobli M, Schuyler AD, Stern AS, Hoch JC.

Top Curr Chem. 2012;316:49-77. doi: 10.1007/128_2011_185. Review. Erratum in: Top Curr Chem. 2012;316:149.

29.

Knowledge-based nonuniform sampling in multidimensional NMR.

Schuyler AD, Maciejewski MW, Arthanari H, Hoch JC.

J Biomol NMR. 2011 Jul;50(3):247-62. doi: 10.1007/s10858-011-9512-6. Epub 2011 May 29.

30.

Phosphoethanolamine methyltransferases in phosphocholine biosynthesis: functions and potential for antiparasite therapy.

Bobenchik AM, Augagneur Y, Hao B, Hoch JC, Ben Mamoun C.

FEMS Microbiol Rev. 2011 Jul;35(4):609-19. doi: 10.1111/j.1574-6976.2011.00267.x. Epub 2011 Mar 10. Review.

31.

A non-uniformly sampled 4D HCC(CO)NH-TOCSY experiment processed using maximum entropy for rapid protein sidechain assignment.

Mobli M, Stern AS, Bermel W, King GF, Hoch JC.

J Magn Reson. 2010 May;204(1):160-4. doi: 10.1016/j.jmr.2010.02.012. Epub 2010 Mar 1.

32.

New NMR machines are set to boost biomedical potential.

Hoch JC.

Nature. 2010 Feb 25;463(7284):1018. doi: 10.1038/4631018c. No abstract available.

PMID:
20182489
33.

Identification of inhibitors of Plasmodium falciparum phosphoethanolamine methyltransferase using an enzyme-coupled transmethylation assay.

Bobenchik AM, Choi JY, Mishra A, Rujan IN, Hao B, Voelker DR, Hoch JC, Mamoun CB.

BMC Biochem. 2010 Jan 19;11:4. doi: 10.1186/1471-2091-11-4.

34.

Nonuniform sampling and spectral aliasing.

Maciejewski MW, Qui HZ, Rujan I, Mobli M, Hoch JC.

J Magn Reson. 2009 Jul;199(1):88-93. doi: 10.1016/j.jmr.2009.04.006. Epub 2009 Apr 16.

35.

Maximum Entropy Spectral Reconstruction of Non-Uniformly Sampled Data.

Mobli M, Hoch JC.

Concepts Magn Reson Part A Bridg Educ Res. 2008 Nov 1;32A(6):436-448.

36.

Comment on "magnetic resonance spectroscopy identifies neural progenitor cells in the live human brain".

Hoch JC, Maciejewski MW, Gryk MR.

Science. 2008 Aug 1;321(5889):640. doi: 10.1126/science.1153058.

37.

Randomization improves sparse sampling in multidimensional NMR.

Hoch JC, Maciejewski MW, Filipovic B.

J Magn Reson. 2008 Aug;193(2):317-20. doi: 10.1016/j.jmr.2008.05.011. Epub 2008 May 21.

38.

Local knowledge helps determine protein structures.

Gryk MR, Hoch JC.

Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4533-4. doi: 10.1073/pnas.0801069105. Epub 2008 Mar 19. No abstract available.

39.

Biochemical and genetic analysis of the phosphoethanolamine methyltransferase of the human malaria parasite Plasmodium falciparum.

Reynolds JM, Takebe S, Choi JY, El Bissati K, Witola WH, Bobenchik AM, Hoch JC, Voelker DR, Mamoun CB.

J Biol Chem. 2008 Mar 21;283(12):7894-900. doi: 10.1074/jbc.M709869200. Epub 2008 Jan 4.

40.

NMR data processing using iterative thresholding and minimum l(1)-norm reconstruction.

Stern AS, Donoho DL, Hoch JC.

J Magn Reson. 2007 Oct;188(2):295-300. Epub 2007 Aug 3.

41.

Automatic maximum entropy spectral reconstruction in NMR.

Mobli M, Maciejewski MW, Gryk MR, Hoch JC.

J Biomol NMR. 2007 Oct;39(2):133-9. Epub 2007 Aug 15.

PMID:
17701276
42.

An automated tool for maximum entropy reconstruction of biomolecular NMR spectra.

Mobli M, Maciejewski MW, Gryk MR, Hoch JC.

Nat Methods. 2007 Jun;4(6):467-8. No abstract available.

PMID:
17538627
43.

Three-dimensional 13C-detected CH3-TOCSY using selectively protonated proteins: facile methyl resonance assignment and protein structure determination.

Jordan JB, Kovacs H, Wang Y, Mobli M, Luo R, Anklin C, Hoch JC, Kriwacki RW.

J Am Chem Soc. 2006 Jul 19;128(28):9119-28.

PMID:
16834385
44.

Spectral reconstruction methods in fast NMR: reduced dimensionality, random sampling and maximum entropy.

Mobli M, Stern AS, Hoch JC.

J Magn Reson. 2006 Sep;182(1):96-105. Epub 2006 Jul 11.

PMID:
16815055
45.

Non-uniformly sampled double-TROSY hNcaNH experiments for NMR sequential assignments of large proteins.

Frueh DP, Sun ZY, Vosburg DA, Walsh CT, Hoch JC, Wagner G.

J Am Chem Soc. 2006 May 3;128(17):5757-63.

46.

Fast assignment of 15N-HSQC peaks using high-resolution 3D HNcocaNH experiments with non-uniform sampling.

Sun ZY, Frueh DP, Selenko P, Hoch JC, Wagner G.

J Biomol NMR. 2005 Sep;33(1):43-50.

PMID:
16222556
47.

Solution structure of human prolactin.

Teilum K, Hoch JC, Goffin V, Kinet S, Martial JA, Kragelund BB.

J Mol Biol. 2005 Aug 26;351(4):810-23.

48.

High-resolution aliphatic side-chain assignments in 3D HCcoNH experiments with joint H-C evolution and non-uniform sampling.

Sun ZY, Hyberts SG, Rovnyak D, Park S, Stern AS, Hoch JC, Wagner G.

J Biomol NMR. 2005 May;32(1):55-60.

PMID:
16041483
49.

Optimization of 13C direct detection NMR methods.

Shimba N, Kovacs H, Stern AS, Nomura AM, Shimada I, Hoch JC, Craik CS, Dötsch V.

J Biomol NMR. 2004 Oct;30(2):175-9.

PMID:
15557804
50.

Resolution and sensitivity of high field nuclear magnetic resonance spectroscopy.

Rovnyak D, Hoch JC, Stern AS, Wagner G.

J Biomol NMR. 2004 Sep;30(1):1-10. Review.

PMID:
15452430

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