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Items: 41

1.

Spatially Resolved Proteome Profiling of <200 Cells from Tomato Fruit Pericarp by Integrating Laser-Capture Microdissection with Nanodroplet Sample Preparation.

Liang Y, Zhu Y, Dou M, Xu K, Chu RK, Chrisler WB, Zhao R, Hixson KK, Kelly RT.

Anal Chem. 2018 Sep 18;90(18):11106-11114. doi: 10.1021/acs.analchem.8b03005. Epub 2018 Aug 30.

PMID:
30118597
2.

Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria.

Xu L, Naylor D, Dong Z, Simmons T, Pierroz G, Hixson KK, Kim YM, Zink EM, Engbrecht KM, Wang Y, Gao C, DeGraaf S, Madera MA, Sievert JA, Hollingsworth J, Birdseye D, Scheller HV, Hutmacher R, Dahlberg J, Jansson C, Taylor JW, Lemaux PG, Coleman-Derr D.

Proc Natl Acad Sci U S A. 2018 May 1;115(18):E4284-E4293. doi: 10.1073/pnas.1717308115. Epub 2018 Apr 16. Erratum in: Proc Natl Acad Sci U S A. 2018 May 14;:.

3.

Reduced Arogenate Dehydratase Expression: Ramifications for Photosynthesis and Metabolism.

Höhner R, Marques JV, Ito T, Amakura Y, Budgeon AD Jr, Weitz K, Hixson KK, Davin LB, Kirchhoff H, Lewis NG.

Plant Physiol. 2018 May;177(1):115-131. doi: 10.1104/pp.17.01766. Epub 2018 Mar 9.

4.

Defects in the Expression of Chloroplast Proteins Leads to H2O2 Accumulation and Activation of Cyclic Electron Flow around Photosystem I.

Strand DD, Livingston AK, Satoh-Cruz M, Koepke T, Enlow HM, Fisher N, Froehlich JE, Cruz JA, Minhas D, Hixson KK, Kohzuma K, Lipton M, Dhingra A, Kramer DM.

Front Plant Sci. 2017 Jan 13;7:2073. doi: 10.3389/fpls.2016.02073. eCollection 2016.

5.

Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles.

Valdés-López O, Batek J, Gomez-Hernandez N, Nguyen CT, Isidra-Arellano MC, Zhang N, Joshi T, Xu D, Hixson KK, Weitz KK, Aldrich JT, Paša-Tolić L, Stacey G.

Front Plant Sci. 2016 Apr 25;7:517. doi: 10.3389/fpls.2016.00517. eCollection 2016.

6.

Proteome of Geobacter sulfurreducens in the presence of U(VI).

Orellana R, Hixson KK, Murphy S, Mester T, Sharma ML, Lipton MS, Lovley DR.

Microbiology. 2014 Dec;160(Pt 12):2607-17. doi: 10.1099/mic.0.081398-0. Epub 2014 Oct 1.

PMID:
25273002
7.

A method to determine lysine acetylation stoichiometries.

Nakayasu ES, Wu S, Sydor MA, Shukla AK, Weitz KK, Moore RJ, Hixson KK, Kim JS, Petyuk VA, Monroe ME, Pasa-Tolic L, Qian WJ, Smith RD, Adkins JN, Ansong C.

Int J Proteomics. 2014;2014:730725. doi: 10.1155/2014/730725. Epub 2014 Jul 20.

8.

Multi-omic data integration links deleted in breast cancer 1 (DBC1) degradation to chromatin remodeling in inflammatory response.

Nakayasu ES, Brown RN, Ansong C, Sydor MA, Imtiaz S, Mihai C, Sontag R, Hixson KK, Monroe ME, Sobreira TJ, Orr G, Petyuk VA, Yang F, Smith RD, Adkins JN.

Mol Cell Proteomics. 2013 Aug;12(8):2136-47. doi: 10.1074/mcp.M112.026138. Epub 2013 May 2.

9.

Quantitative phosphoproteomic analysis of soybean root hairs inoculated with Bradyrhizobium japonicum.

Nguyen TH, Brechenmacher L, Aldrich JT, Clauss TR, Gritsenko MA, Hixson KK, Libault M, Tanaka K, Yang F, Yao Q, Pasa-Tolić L, Xu D, Nguyen HT, Stacey G.

Mol Cell Proteomics. 2012 Nov;11(11):1140-55. doi: 10.1074/mcp.M112.018028. Epub 2012 Jul 25.

10.

Genome sequence of the deltaproteobacterial strain NaphS2 and analysis of differential gene expression during anaerobic growth on naphthalene.

DiDonato RJ Jr, Young ND, Butler JE, Chin KJ, Hixson KK, Mouser P, Lipton MS, DeBoy R, Methé BA.

PLoS One. 2010 Nov 19;5(11):e14072. doi: 10.1371/journal.pone.0014072.

11.

Proteomic and physiological responses of Kineococcus radiotolerans to copper.

Bagwell CE, Hixson KK, Milliken CE, Lopez-Ferrer D, Weitz KK.

PLoS One. 2010 Aug 26;5(8):e12427. doi: 10.1371/journal.pone.0012427.

12.

Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models.

Lewis NE, Hixson KK, Conrad TM, Lerman JA, Charusanti P, Polpitiya AD, Adkins JN, Schramm G, Purvine SO, Lopez-Ferrer D, Weitz KK, Eils R, König R, Smith RD, Palsson BØ.

Mol Syst Biol. 2010 Jul;6:390. doi: 10.1038/msb.2010.47.

13.

Pressurized pepsin digestion in proteomics: an automatable alternative to trypsin for integrated top-down bottom-up proteomics.

López-Ferrer D, Petritis K, Robinson EW, Hixson KK, Tian Z, Lee JH, Lee SW, Tolić N, Weitz KK, Belov ME, Smith RD, Pasa-Tolić L.

Mol Cell Proteomics. 2011 Feb;10(2):M110.001479. doi: 10.1074/mcp.M110.001479. Epub 2010 Jul 12.

14.

Analyzing protease specificity and detecting in vivo proteolytic events using tandem mass spectrometry.

Gupta N, Hixson KK, Culley DE, Smith RD, Pevzner PA.

Proteomics. 2010 Aug;10(15):2833-44. doi: 10.1002/pmic.200900821.

15.

Establishing the proteome of normal human cerebrospinal fluid.

Schutzer SE, Liu T, Natelson BH, Angel TE, Schepmoes AA, Purvine SO, Hixson KK, Lipton MS, Camp DG, Coyle PK, Smith RD, Bergquist J.

PLoS One. 2010 Jun 11;5(6):e10980. doi: 10.1371/journal.pone.0010980.

16.

Proteomic detection of non-annotated protein-coding genes in Pseudomonas fluorescens Pf0-1.

Kim W, Silby MW, Purvine SO, Nicoll JS, Hixson KK, Monroe M, Nicora CD, Lipton MS, Levy SB.

PLoS One. 2009 Dec 24;4(12):e8455. doi: 10.1371/journal.pone.0008455.

17.

Evaluation of a high-intensity focused ultrasound-immobilized trypsin digestion and 18O-labeling method for quantitative proteomics.

López-Ferrer D, Hixson KK, Smallwood H, Squier TC, Petritis K, Smith RD.

Anal Chem. 2009 Aug 1;81(15):6272-7. doi: 10.1021/ac802540s.

18.

On-line digestion system for protein characterization and proteome analysis.

López-Ferrer D, Petritis K, Lourette NM, Clowers B, Hixson KK, Heibeck T, Prior DC, Pasa-Tolić L, Camp DG 2nd, Belov ME, Smith RD.

Anal Chem. 2008 Dec 1;80(23):8930-6. doi: 10.1021/ac800927v.

19.

Label-free relative quantitation of prokaryotic proteomes using the accurate mass and time tag approach.

Hixson KK.

Methods Mol Biol. 2009;492:39-63. doi: 10.1007/978-1-59745-493-3_3.

PMID:
19241026
20.

De novo sequencing of unique sequence tags for discovery of post-translational modifications of proteins.

Shen Y, Tolić N, Hixson KK, Purvine SO, Anderson GA, Smith RD.

Anal Chem. 2008 Oct 15;80(20):7742-54. doi: 10.1021/ac801123p. Epub 2008 Sep 11.

21.

High sensitivity proteomics assisted discovery of a novel operon involved in the assembly of photosystem II, a membrane protein complex.

Wegener KM, Welsh EA, Thornton LE, Keren N, Jacobs JM, Hixson KK, Monroe ME, Camp DG 2nd, Smith RD, Pakrasi HB.

J Biol Chem. 2008 Oct 10;283(41):27829-37. doi: 10.1074/jbc.M803918200. Epub 2008 Aug 8.

22.

Rapid sample processing for LC-MS-based quantitative proteomics using high intensity focused ultrasound.

López-Ferrer D, Heibeck TH, Petritis K, Hixson KK, Qian W, Monroe ME, Mayampurath A, Moore RJ, Belov ME, Camp DG 2nd, Smith RD.

J Proteome Res. 2008 Sep;7(9):3860-7. doi: 10.1021/pr800161x. Epub 2008 Aug 8.

23.

Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor.

Ding YH, Hixson KK, Aklujkar MA, Lipton MS, Smith RD, Lovley DR, Mester T.

Biochim Biophys Acta. 2008 Dec;1784(12):1935-41. doi: 10.1016/j.bbapap.2008.06.011. Epub 2008 Jun 25.

PMID:
18638577
24.

Application of pressurized solvents for ultrafast trypsin hydrolysis in proteomics: proteomics on the fly.

López-Ferrer D, Petritis K, Hixson KK, Heibeck TH, Moore RJ, Belov ME, Camp DG 2nd, Smith RD.

J Proteome Res. 2008 Aug;7(8):3276-81. doi: 10.1021/pr7008077. Epub 2008 Jul 8.

25.

Mass spectrometry analysis of proteome-wide proteolytic post-translational degradation of proteins.

Shen Y, Hixson KK, Tolić N, Camp DG, Purvine SO, Moore RJ, Smith RD.

Anal Chem. 2008 Aug 1;80(15):5819-28. doi: 10.1021/ac800077w. Epub 2008 Jun 26.

26.

Proteome-wide identification of proteins and their modifications with decreased ambiguities and improved false discovery rates using unique sequence tags.

Shen Y, Tolić N, Hixson KK, Purvine SO, Pasa-Tolić L, Qian WJ, Adkins JN, Moore RJ, Smith RD.

Anal Chem. 2008 Mar 15;80(6):1871-82. doi: 10.1021/ac702328x. Epub 2008 Feb 14.

27.

The distinct proteome of placental malaria parasites.

Fried M, Hixson KK, Anderson L, Ogata Y, Mutabingwa TK, Duffy PE.

Mol Biochem Parasitol. 2007 Sep;155(1):57-65. Epub 2007 May 29.

PMID:
17618698
28.

Proteome analysis of Desulfovibrio desulfuricans G20 mutants using the accurate mass and time (AMT) tag approach.

Luo Q, Hixson KK, Callister SJ, Lipton MS, Morris BE, Krumholz LR.

J Proteome Res. 2007 Aug;6(8):3042-53. Epub 2007 Jun 30.

PMID:
17602684
29.

Biomarker candidate identification in Yersinia pestis using organism-wide semiquantitative proteomics.

Hixson KK, Adkins JN, Baker SE, Moore RJ, Chromy BA, Smith RD, McCutchen-Maloney SL, Lipton MS.

J Proteome Res. 2006 Nov;5(11):3008-17.

PMID:
17081052
30.

Protein composition of the vaccinia virus mature virion.

Resch W, Hixson KK, Moore RJ, Lipton MS, Moss B.

Virology. 2007 Feb 5;358(1):233-47. Epub 2006 Sep 26.

31.

AMT tag approach to proteomic characterization of Deinococcus radiodurans and Shewanella oneidensis.

Lipton MS, Romine MF, Monroe ME, Elias DA, Pasa-Tolic L, Anderson GA, Anderson DJ, Fredrickson J, Hixson KK, Masselon C, Mottaz H, Tolic N, Smith RD.

Methods Biochem Anal. 2006;49:113-34. No abstract available.

PMID:
16929677
32.

The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions.

Ding YH, Hixson KK, Giometti CS, Stanley A, Esteve-Núñez A, Khare T, Tollaksen SL, Zhu W, Adkins JN, Lipton MS, Smith RD, Mester T, Lovley DR.

Biochim Biophys Acta. 2006 Jul;1764(7):1198-206. Epub 2006 May 16.

PMID:
16797259
33.

More sensitive and quantitative proteomic measurements using very low flow rate porous silica monolithic LC columns with electrospray ionization-mass spectrometry.

Luo Q, Tang K, Yang F, Elias A, Shen Y, Moore RJ, Zhao R, Hixson KK, Rossie SS, Smith RD.

J Proteome Res. 2006 May;5(5):1091-7.

PMID:
16674098
34.

Preparation of 20-microm-i.d. silica-based monolithic columns and their performance for proteomics analyses.

Luo Q, Shen Y, Hixson KK, Zhao R, Yang F, Moore RJ, Mottaz HM, Smith RD.

Anal Chem. 2005 Aug 1;77(15):5028-35.

PMID:
16053318
35.

Automated 20 kpsi RPLC-MS and MS/MS with chromatographic peak capacities of 1000-1500 and capabilities in proteomics and metabolomics.

Shen Y, Zhang R, Moore RJ, Kim J, Metz TO, Hixson KK, Zhao R, Livesay EA, Udseth HR, Smith RD.

Anal Chem. 2005 May 15;77(10):3090-100.

PMID:
15889897
36.

Integrative analysis of the mitochondrial proteome in yeast.

Prokisch H, Scharfe C, Camp DG 2nd, Xiao W, David L, Andreoli C, Monroe ME, Moore RJ, Gritsenko MA, Kozany C, Hixson KK, Mottaz HM, Zischka H, Ueffing M, Herman ZS, Davis RW, Meitinger T, Oefner PJ, Smith RD, Steinmetz LM.

PLoS Biol. 2004 Jun;2(6):e160. Epub 2004 Jun 15.

37.

Ultrasensitive proteomics using high-efficiency on-line micro-SPE-nanoLC-nanoESI MS and MS/MS.

Shen Y, Tolić N, Masselon C, Pasa-Tolić L, Camp DG 2nd, Hixson KK, Zhao R, Anderson GA, Smith RD.

Anal Chem. 2004 Jan 1;76(1):144-54.

PMID:
14697044
38.
39.

High-efficiency on-line solid-phase extraction coupling to 15-150-microm-i.d. column liquid chromatography for proteomic analysis.

Shen Y, Moore RJ, Zhao R, Blonder J, Auberry DL, Masselon C, Pasa-Tolić L, Hixson KK, Auberry KJ, Smith RD.

Anal Chem. 2003 Jul 15;75(14):3596-3605.

PMID:
14570215
40.

Evaluation of enzymatic digestion and liquid chromatography-mass spectrometry peptide mapping of the integral membrane protein bacteriorhodopsin.

Hixson KK, Rodriguez N, Camp DG 2nd, Strittmatter EF, Lipton MS, Smith RD.

Electrophoresis. 2002 Sep;23(18):3224-32.

PMID:
12298094
41.

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags.

Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD.

Proc Natl Acad Sci U S A. 2002 Aug 20;99(17):11049-54. Epub 2002 Aug 12.

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