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Items: 17

1.

Nonadaptive explanations for signatures of partial selective sweeps in Drosophila.

Macpherson JM, González J, Witten DM, Davis JC, Rosenberg NA, Hirsh AE, Petrov DA.

Mol Biol Evol. 2008 Jun;25(6):1025-42. doi: 10.1093/molbev/msn007. Epub 2008 Jan 16.

2.

The application of statistical physics to evolutionary biology.

Sella G, Hirsh AE.

Proc Natl Acad Sci U S A. 2005 Jul 5;102(27):9541-6. Epub 2005 Jun 24. Erratum in: Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14475.

3.

Functional genomic analysis of the rates of protein evolution.

Wall DP, Hirsh AE, Fraser HB, Kumm J, Giaever G, Eisen MB, Feldman MW.

Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5483-8. Epub 2005 Mar 30. Erratum in: Proc Natl Acad Sci U S A. 2006 May 16;103(20):7935.

4.

Detecting putative orthologs.

Wall DP, Fraser HB, Hirsh AE.

Bioinformatics. 2003 Sep 1;19(13):1710-1.

PMID:
15593400
5.
6.

Adjusting for selection on synonymous sites in estimates of evolutionary distance.

Hirsh AE, Fraser HB, Wall DP.

Mol Biol Evol. 2005 Jan;22(1):174-7. Epub 2004 Sep 15.

PMID:
15371530
7.

Coevolution of gene expression among interacting proteins.

Fraser HB, Hirsh AE, Wall DP, Eisen MB.

Proc Natl Acad Sci U S A. 2004 Jun 15;101(24):9033-8. Epub 2004 Jun 2.

9.

Noise minimization in eukaryotic gene expression.

Fraser HB, Hirsh AE, Giaever G, Kumm J, Eisen MB.

PLoS Biol. 2004 Jun;2(6):e137. Epub 2004 Apr 27.

10.

Stable association between strains of Mycobacterium tuberculosis and their human host populations.

Hirsh AE, Tsolaki AG, DeRiemer K, Feldman MW, Small PM.

Proc Natl Acad Sci U S A. 2004 Apr 6;101(14):4871-6. Epub 2004 Mar 23.

11.

Functional and evolutionary genomics of Mycobacterium tuberculosis: insights from genomic deletions in 100 strains.

Tsolaki AG, Hirsh AE, DeRiemer K, Enciso JA, Wong MZ, Hannan M, Goguet de la Salmoniere YO, Aman K, Kato-Maeda M, Small PM.

Proc Natl Acad Sci U S A. 2004 Apr 6;101(14):4865-70. Epub 2004 Mar 15.

12.

On the use of star-shaped genealogies in inference of coalescence times.

Rosenberg NA, Hirsh AE.

Genetics. 2003 Aug;164(4):1677-82.

13.

A simple dependence between protein evolution rate and the number of protein-protein interactions.

Fraser HB, Wall DP, Hirsh AE.

BMC Evol Biol. 2003 May 23;3:11. Epub 2003 May 23.

14.

Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila.

Petrov DA, Aminetzach YT, Davis JC, Bensasson D, Hirsh AE.

Mol Biol Evol. 2003 Jun;20(6):880-92. Epub 2003 Apr 25.

PMID:
12716993
15.

Evolutionary rate in the protein interaction network.

Fraser HB, Hirsh AE, Steinmetz LM, Scharfe C, Feldman MW.

Science. 2002 Apr 26;296(5568):750-2.

16.
17.

Protein dispensability and rate of evolution.

Hirsh AE, Fraser HB.

Nature. 2001 Jun 28;411(6841):1046-9.

PMID:
11429604

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