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Items: 22

1.

Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars.

Kuon JE, Qi W, Schläpfer P, Hirsch-Hoffmann M, von Bieberstein PR, Patrignani A, Poveda L, Grob S, Keller M, Shimizu-Inatsugi R, Grossniklaus U, Vanderschuren H, Gruissem W.

BMC Biol. 2019 Sep 18;17(1):75. doi: 10.1186/s12915-019-0697-6.

2.

Genome-scale, single-cell-type resolution of microRNA activities within a whole plant organ.

Brosnan CA, Sarazin A, Lim P, Bologna NG, Hirsch-Hoffmann M, Voinnet O.

EMBO J. 2019 Jul 1;38(13):e100754. doi: 10.15252/embj.2018100754. Epub 2019 Jun 12.

PMID:
31268601
3.

Linking CRISPR-Cas9 interference in cassava to the evolution of editing-resistant geminiviruses.

Mehta D, Stürchler A, Anjanappa RB, Zaidi SS, Hirsch-Hoffmann M, Gruissem W, Vanderschuren H.

Genome Biol. 2019 Apr 25;20(1):80. doi: 10.1186/s13059-019-1678-3.

4.

Diurnal changes in concerted plant protein phosphorylation and acetylation in Arabidopsis organs and seedlings.

Uhrig RG, Schläpfer P, Roschitzki B, Hirsch-Hoffmann M, Gruissem W.

Plant J. 2019 Jul;99(1):176-194. doi: 10.1111/tpj.14315. Epub 2019 May 13.

PMID:
30920011
5.

A new full-length circular DNA sequencing method for viral-sized genomes reveals that RNAi transgenic plants provoke a shift in geminivirus populations in the field.

Mehta D, Hirsch-Hoffmann M, Were M, Patrignani A, Zaidi SS, Were H, Gruissem W, Vanderschuren H.

Nucleic Acids Res. 2019 Jan 25;47(2):e9. doi: 10.1093/nar/gky914.

6.

Design and Use of a Digitally Controlled Device for Accurate, Multiplexed Gas Exchange Measurements of the Complete Foliar Parts of Plants.

George GM, Kölling K, Kuenzli R, Hirsch-Hoffmann M, Flütsch P, Zeeman SC.

Methods Mol Biol. 2018;1770:45-68. doi: 10.1007/978-1-4939-7786-4_3.

PMID:
29978395
7.

Genome-scale analysis of regulatory protein acetylation enzymes from photosynthetic eukaryotes.

Uhrig RG, Schläpfer P, Mehta D, Hirsch-Hoffmann M, Gruissem W.

BMC Genomics. 2017 Jul 5;18(1):514. doi: 10.1186/s12864-017-3894-0.

8.

Diurnal changes in the histone H3 signature H3K9ac|H3K27ac|H3S28p are associated with diurnal gene expression in Arabidopsis.

Baerenfaller K, Shu H, Hirsch-Hoffmann M, Fütterer J, Opitz L, Rehrauer H, Hennig L, Gruissem W.

Plant Cell Environ. 2016 Nov;39(11):2557-2569. doi: 10.1111/pce.12811. Epub 2016 Sep 30.

9.

Large-Scale Proteomics of the Cassava Storage Root and Identification of a Target Gene to Reduce Postharvest Deterioration.

Vanderschuren H, Nyaboga E, Poon JS, Baerenfaller K, Grossmann J, Hirsch-Hoffmann M, Kirchgessner N, Nanni P, Gruissem W.

Plant Cell. 2014 May;26(5):1913-1924. Epub 2014 May 29.

10.

Protein abundance changes and ubiquitylation targets identified after inhibition of the proteasome with syringolin A.

Svozil J, Hirsch-Hoffmann M, Dudler R, Gruissem W, Baerenfaller K.

Mol Cell Proteomics. 2014 Jun;13(6):1523-36. doi: 10.1074/mcp.M113.036269. Epub 2014 Apr 13.

11.

Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit.

Baerenfaller K, Massonnet C, Walsh S, Baginsky S, Bühlmann P, Hennig L, Hirsch-Hoffmann M, Howell KA, Kahlau S, Radziejwoski A, Russenberger D, Rutishauser D, Small I, Stekhoven D, Sulpice R, Svozil J, Wuyts N, Stitt M, Hilson P, Granier C, Gruissem W.

Mol Syst Biol. 2012;8:606. doi: 10.1038/msb.2012.39.

12.

pep2pro: the high-throughput proteomics data processing, analysis, and visualization tool.

Hirsch-Hoffmann M, Gruissem W, Baerenfaller K.

Front Plant Sci. 2012 Jun 11;3:123. doi: 10.3389/fpls.2012.00123. eCollection 2012.

13.

Plastid proteome assembly without Toc159: photosynthetic protein import and accumulation of N-acetylated plastid precursor proteins.

Bischof S, Baerenfaller K, Wildhaber T, Troesch R, Vidi PA, Roschitzki B, Hirsch-Hoffmann M, Hennig L, Kessler F, Gruissem W, Baginsky S.

Plant Cell. 2011 Nov;23(11):3911-28. doi: 10.1105/tpc.111.092882. Epub 2011 Nov 29.

14.

AtIPD: a curated database of Arabidopsis isoprenoid pathway models and genes for isoprenoid network analysis.

Vranová E, Hirsch-Hoffmann M, Gruissem W.

Plant Physiol. 2011 Aug;156(4):1655-60. doi: 10.1104/pp.111.177758. Epub 2011 May 26. No abstract available.

15.

pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana.

Baerenfaller K, Hirsch-Hoffmann M, Svozil J, Hull R, Russenberger D, Bischof S, Lu Q, Gruissem W, Baginsky S.

Integr Biol (Camb). 2011 Mar;3(3):225-37. doi: 10.1039/c0ib00078g. Epub 2011 Jan 24.

PMID:
21264403
16.

MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data.

Joshi HJ, Hirsch-Hoffmann M, Baerenfaller K, Gruissem W, Baginsky S, Schmidt R, Schulze WX, Sun Q, van Wijk KJ, Egelhofer V, Wienkoop S, Weckwerth W, Bruley C, Rolland N, Toyoda T, Nakagami H, Jones AM, Briggs SP, Castleden I, Tanz SK, Millar AH, Heazlewood JL.

Plant Physiol. 2011 Jan;155(1):259-70. doi: 10.1104/pp.110.168195. Epub 2010 Nov 12.

17.

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

Baerenfaller K, Grossmann J, Grobei MA, Hull R, Hirsch-Hoffmann M, Yalovsky S, Zimmermann P, Grossniklaus U, Gruissem W, Baginsky S.

Science. 2008 May 16;320(5878):938-41. doi: 10.1126/science.1157956. Epub 2008 Apr 24.

18.

PlantDB - a versatile database for managing plant research.

Exner V, Hirsch-Hoffmann M, Gruissem W, Hennig L.

Plant Methods. 2008 Jan 8;4:1. doi: 10.1186/1746-4811-4-1.

19.

Proteome dynamics during plastid differentiation in rice.

Kleffmann T, von Zychlinski A, Russenberger D, Hirsch-Hoffmann M, Gehrig P, Gruissem W, Baginsky S.

Plant Physiol. 2007 Feb;143(2):912-23. Epub 2006 Dec 22.

20.

Web-based analysis of the mouse transcriptome using Genevestigator.

Laule O, Hirsch-Hoffmann M, Hruz T, Gruissem W, Zimmermann P.

BMC Bioinformatics. 2006 Jun 21;7:311.

21.

plprot: a comprehensive proteome database for different plastid types.

Kleffmann T, Hirsch-Hoffmann M, Gruissem W, Baginsky S.

Plant Cell Physiol. 2006 Mar;47(3):432-6. Epub 2006 Jan 17.

PMID:
16418230
22.

GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.

Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W.

Plant Physiol. 2004 Sep;136(1):2621-32. Erratum in: Plant Physiol. 2004 Dec;136(4):4335.

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