Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 26

1.

Tandem Duplicate Genes in Maize Are Abundant and Date to Two Distinct Periods of Time.

Kono TJY, Brohammer AB, McGaugh SE, Hirsch CN.

G3 (Bethesda). 2018 Jul 20. pii: g3.200580.2018. doi: 10.1534/g3.118.200580. [Epub ahead of print]

PMID:
30030405
2.

Genetic Fine-Mapping of a Quantitative Trait Locus (QTL) Associated with Embryogenic Tissue Culture Response and Plant Regeneration Ability in Maize (Zea mays L.).

Salvo S, Cook J, Carlson AR, Hirsch CN, Kaeppler SM, Kaeppler HF.

Plant Genome. 2018 Jul;11(2). doi: 10.3835/plantgenome2017.12.0111.

3.

Weeding out bad alleles.

Hirsch CN, Springer NM.

Nat Plants. 2018 Apr;4(4):193-194. doi: 10.1038/s41477-018-0133-x. No abstract available.

PMID:
29556084
4.

Genotype-by-environment interactions affecting heterosis in maize.

Li Z, Coffey L, Garfin J, Miller ND, White MR, Spalding EP, de Leon N, Kaeppler SM, Schnable PS, Springer NM, Hirsch CN.

PLoS One. 2018 Jan 17;13(1):e0191321. doi: 10.1371/journal.pone.0191321. eCollection 2018.

5.

The limited role of differential fractionation in genome content variation and function in maize (Zea mays L.) inbred lines.

Brohammer AB, Kono TJY, Springer NM, McGaugh SE, Hirsch CN.

Plant J. 2018 Jan;93(1):131-141. doi: 10.1111/tpj.13765. Epub 2017 Dec 2.

PMID:
29124819
6.

The effect of artificial selection on phenotypic plasticity in maize.

Gage JL, Jarquin D, Romay C, Lorenz A, Buckler ES, Kaeppler S, Alkhalifah N, Bohn M, Campbell DA, Edwards J, Ertl D, Flint-Garcia S, Gardiner J, Good B, Hirsch CN, Holland J, Hooker DC, Knoll J, Kolkman J, Kruger G, Lauter N, Lawrence-Dill CJ, Lee E, Lynch J, Murray SC, Nelson R, Petzoldt J, Rocheford T, Schnable J, Schnable PS, Scully B, Smith M, Springer NM, Srinivasan S, Walton R, Weldekidan T, Wisser RJ, Xu W, Yu J, de Leon N.

Nat Commun. 2017 Nov 7;8(1):1348. doi: 10.1038/s41467-017-01450-2.

7.

Natural variation for gene expression responses to abiotic stress in maize.

Waters AJ, Makarevitch I, Noshay J, Burghardt LT, Hirsch CN, Hirsch CD, Springer NM.

Plant J. 2017 Feb;89(4):706-717. doi: 10.1111/tpj.13414. Epub 2017 Feb 11.

8.

An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development.

Stelpflug SC, Sekhon RS, Vaillancourt B, Hirsch CN, Buell CR, de Leon N, Kaeppler SM.

Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.04.0025.

9.

Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize.

Hirsch CN, Hirsch CD, Brohammer AB, Bowman MJ, Soifer I, Barad O, Shem-Tov D, Baruch K, Lu F, Hernandez AG, Fields CJ, Wright CL, Koehler K, Springer NM, Buckler E, Buell CR, de Leon N, Kaeppler SM, Childs KL, Mikel MA.

Plant Cell. 2016 Nov;28(11):2700-2714. Epub 2016 Nov 1.

10.

Evidence for maternal control of seed size in maize from phenotypic and transcriptional analysis.

Zhang X, Hirsch CN, Sekhon RS, de Leon N, Kaeppler SM.

J Exp Bot. 2016 Mar;67(6):1907-17. doi: 10.1093/jxb/erw006. Epub 2016 Jan 29.

11.

RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome.

Li Q, Gent JI, Zynda G, Song J, Makarevitch I, Hirsch CD, Hirsch CN, Dawe RK, Madzima TF, McGinnis KM, Lisch D, Schmitz RJ, Vaughn MW, Springer NM.

Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14728-33. doi: 10.1073/pnas.1514680112. Epub 2015 Nov 9.

12.

Correction: Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress.

Makarevitch I, Waters AJ, West PT, Stitzer M, Hirsch CN, Ross-Ibarra J, Springer NM.

PLoS Genet. 2015 Oct 9;11(10):e1005566. doi: 10.1371/journal.pgen.1005566. eCollection 2015 Oct. No abstract available.

13.

Genomic limitations to RNA sequencing expression profiling.

Hirsch CD, Springer NM, Hirsch CN.

Plant J. 2015 Nov;84(3):491-503. doi: 10.1111/tpj.13014. Epub 2015 Oct 6.

14.

Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis.

Haase NJ, Beissinger T, Hirsch CN, Vaillancourt B, Deshpande S, Barry K, Buell CR, Kaeppler SM, de Leon N.

G3 (Bethesda). 2015 Jun 1;5(8):1593-602. doi: 10.1534/g3.115.017665.

15.

Transposable elements contribute to activation of maize genes in response to abiotic stress.

Makarevitch I, Waters AJ, West PT, Stitzer M, Hirsch CN, Ross-Ibarra J, Springer NM.

PLoS Genet. 2015 Jan 8;11(1):e1004915. doi: 10.1371/journal.pgen.1004915. eCollection 2015 Jan. Erratum in: PLoS Genet. 2015 Oct;11(10):e1005566.

16.

Whole transcriptome profiling of maize during early somatic embryogenesis reveals altered expression of stress factors and embryogenesis-related genes.

Salvo SA, Hirsch CN, Buell CR, Kaeppler SM, Kaeppler HF.

PLoS One. 2014 Oct 30;9(10):e111407. doi: 10.1371/journal.pone.0111407. eCollection 2014.

17.

QTL mapping and phenotypic variation for root architectural traits in maize (Zea mays L.).

Burton AL, Johnson JM, Foerster JM, Hirsch CN, Buell CR, Hanlon MT, Kaeppler SM, Brown KM, Lynch JP.

Theor Appl Genet. 2014 Nov;127(11):2293-311. doi: 10.1007/s00122-014-2353-4. Epub 2014 Sep 18.

PMID:
25230896
18.

Insights into the effects of long-term artificial selection on seed size in maize.

Hirsch CN, Flint-Garcia SA, Beissinger TM, Eichten SR, Deshpande S, Barry K, McMullen MD, Holland JB, Buckler ES, Springer N, Buell CR, de Leon N, Kaeppler SM.

Genetics. 2014 Sep;198(1):409-21. doi: 10.1534/genetics.114.167155. Epub 2014 Jul 17.

19.

Phenotypic and Transcriptional Analysis of Divergently Selected Maize Populations Reveals the Role of Developmental Timing in Seed Size Determination.

Sekhon RS, Hirsch CN, Childs KL, Breitzman MW, Kell P, Duvick S, Spalding EP, Buell CR, de Leon N, Kaeppler SM.

Plant Physiol. 2014 Jun;165(2):658-669. Epub 2014 Apr 7.

20.

Insights into the maize pan-genome and pan-transcriptome.

Hirsch CN, Foerster JM, Johnson JM, Sekhon RS, Muttoni G, Vaillancourt B, Pe├▒agaricano F, Lindquist E, Pedraza MA, Barry K, de Leon N, Kaeppler SM, Buell CR.

Plant Cell. 2014 Jan;26(1):121-35. doi: 10.1105/tpc.113.119982. Epub 2014 Jan 31.

21.

Reduced representation approaches to interrogate genome diversity in large repetitive plant genomes.

Hirsch CD, Evans J, Buell CR, Hirsch CN.

Brief Funct Genomics. 2014 Jul;13(4):257-67. doi: 10.1093/bfgp/elt051. Epub 2014 Jan 6.

PMID:
24395692
22.

A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number.

Beissinger TM, Hirsch CN, Vaillancourt B, Deshpande S, Barry K, Buell CR, Kaeppler SM, Gianola D, de Leon N.

Genetics. 2014 Mar;196(3):829-40. doi: 10.1534/genetics.113.160655. Epub 2013 Dec 30.

23.

Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays.

Sekhon RS, Briskine R, Hirsch CN, Myers CL, Springer NM, Buell CR, de Leon N, Kaeppler SM.

PLoS One. 2013 Apr 23;8(4):e61005. doi: 10.1371/journal.pone.0061005. Print 2013. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/0444d495-9231-4097-abe0-4750b9045971.

24.

Retrospective view of North American potato (Solanum tuberosum L.) breeding in the 20th and 21st centuries.

Hirsch CN, Hirsch CD, Felcher K, Coombs J, Zarka D, Van Deynze A, De Jong W, Veilleux RE, Jansky S, Bethke P, Douches DS, Buell CR.

G3 (Bethesda). 2013 Jun 21;3(6):1003-13. doi: 10.1534/g3.113.005595.

25.

Tapping the promise of genomics in species with complex, nonmodel genomes.

Hirsch CN, Buell CR.

Annu Rev Plant Biol. 2013;64:89-110. doi: 10.1146/annurev-arplant-050312-120237. Epub 2013 Feb 6. Review.

PMID:
23451780
26.

Marker density and read depth for genotyping populations using genotyping-by-sequencing.

Beissinger TM, Hirsch CN, Sekhon RS, Foerster JM, Johnson JM, Muttoni G, Vaillancourt B, Buell CR, Kaeppler SM, de Leon N.

Genetics. 2013 Apr;193(4):1073-81. doi: 10.1534/genetics.112.147710. Epub 2013 Feb 14.

Supplemental Content

Loading ...
Support Center