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Items: 1 to 50 of 154

1.

Specification of basal region identity after asymmetric zygotic division requires mitogen-activated protein kinase 6 in rice.

Ishimoto K, Sohonahra S, Kishi-Kaboshi M, Itoh JI, Hibara KI, Sato Y, Watanabe T, Abe K, Miyao A, Nosaka-Takahashi M, Suzuki T, Ta NK, Shimizu-Sato S, Suzuki T, Toyoda A, Takahashi H, Nakazono M, Nagato Y, Hirochika H, Sato Y.

Development. 2019 Jun 21;146(13). pii: dev176305. doi: 10.1242/dev.176305.

PMID:
31118231
2.

Characterisation of a rice vacuolar invertase isoform, OsINV2, for growth and yield-related traits.

Morey SR, Hirose T, Hashida Y, Miyao A, Hirochika H, Ohsugi R, Yamagishi J, Aoki N.

Funct Plant Biol. 2019 May 2. doi: 10.1071/FP18291. [Epub ahead of print]

PMID:
31043226
3.

The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.

Maeda S, Dubouzet JG, Kondou Y, Jikumaru Y, Seo S, Oda K, Matsui M, Hirochika H, Mori M.

Sci Rep. 2019 Jan 24;9(1):587. doi: 10.1038/s41598-018-37365-1.

4.

The MAMP-Responsive MYB Transcription Factors MYB30, MYB55 and MYB110 Activate the HCAA Synthesis Pathway and Enhance Immunity in Rice.

Kishi-Kaboshi M, Seo S, Takahashi A, Hirochika H.

Plant Cell Physiol. 2018 May 1;59(5):903-915. doi: 10.1093/pcp/pcy062.

PMID:
29562362
5.

Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.

Morey SR, Hirose T, Hashida Y, Miyao A, Hirochika H, Ohsugi R, Yamagishi J, Aoki N.

Rice (N Y). 2018 Jan 17;11(1):6. doi: 10.1186/s12284-018-0201-x.

6.

Abiotic Stresses Antagonize the Rice Defence Pathway through the Tyrosine-Dephosphorylation of OsMPK6.

Ueno Y, Yoshida R, Kishi-Kaboshi M, Matsushita A, Jiang CJ, Goto S, Takahashi A, Hirochika H, Takatsuji H.

PLoS Pathog. 2015 Oct 20;11(10):e1005231. doi: 10.1371/journal.ppat.1005231. eCollection 2015 Oct.

7.

Loss of function mutations in the rice chromomethylase OsCMT3a cause a burst of transposition.

Cheng C, Tarutani Y, Miyao A, Ito T, Yamazaki M, Sakai H, Fukai E, Hirochika H.

Plant J. 2015 Sep;83(6):1069-81. doi: 10.1111/tpj.12952.

8.

Phenotypic analyses of rice lse2 and lse3 mutants that exhibit hyperaccumulation of starch in the leaf blades.

Liang C, Hirose T, Okamura M, Tanimoto R, Miyao A, Hirochika H, Terao T, Li T, Ohsugi R, Aoki N.

Rice (N Y). 2014 Dec;7(1):32. doi: 10.1186/s12284-014-0032-3. Epub 2014 Dec 21.

9.

Response of an aspartic protease gene OsAP77 to fungal, bacterial and viral infections in rice.

Alam MM, Nakamura H, Ichikawa H, Miyao A, Hirochika H, Kobayashi K, Yamaoka N, Nishiguchi M.

Rice (N Y). 2014 Dec;7(1):9. doi: 10.1186/s12284-014-0009-2. Epub 2014 Aug 27.

10.

Rice immune regulator, OsPti1a, is specifically phosphorylated at the plasma membrane.

Matsui H, Takahashi A, Hirochika H.

Plant Signal Behav. 2015;10(3):e991569. doi: 10.4161/15592324.2014.991569.

11.

Plasma membrane localization is essential for Oryza sativa Pto-interacting protein 1a-mediated negative regulation of immune signaling in rice.

Matsui H, Fujiwara M, Hamada S, Shimamoto K, Nomura Y, Nakagami H, Takahashi A, Hirochika H.

Plant Physiol. 2014 Sep;166(1):327-36. doi: 10.1104/pp.114.243873. Epub 2014 Jun 23.

12.

OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development.

Kurusu T, Koyano T, Hanamata S, Kubo T, Noguchi Y, Yagi C, Nagata N, Yamamoto T, Ohnishi T, Okazaki Y, Kitahata N, Ando D, Ishikawa M, Wada S, Miyao A, Hirochika H, Shimada H, Makino A, Saito K, Ishida H, Kinoshita T, Kurata N, Kuchitsu K.

Autophagy. 2014 May;10(5):878-88. doi: 10.4161/auto.28279. Epub 2014 Mar 24.

13.

Transposon Insertion Finder (TIF): a novel program for detection of de novo transpositions of transposable elements.

Nakagome M, Solovieva E, Takahashi A, Yasue H, Hirochika H, Miyao A.

BMC Bioinformatics. 2014 Mar 14;15:71. doi: 10.1186/1471-2105-15-71.

14.

Isolation of a novel mutant gene for soil-surface rooting in rice (Oryza sativa L.).

Hanzawa E, Sasaki K, Nagai S, Obara M, Fukuta Y, Uga Y, Miyao A, Hirochika H, Higashitani A, Maekawa M, Sato T.

Rice (N Y). 2013 Nov 20;6(1):30. doi: 10.1186/1939-8433-6-30.

15.

Increase in cellulose accumulation and improvement of saccharification by overexpression of arabinofuranosidase in rice.

Sumiyoshi M, Nakamura A, Nakamura H, Hakata M, Ichikawa H, Hirochika H, Ishii T, Satoh S, Iwai H.

PLoS One. 2013 Nov 4;8(11):e78269. doi: 10.1371/journal.pone.0078269. eCollection 2013.

16.

Disruption of a rice gene for α-glucan water dikinase, OsGWD1, leads to hyperaccumulation of starch in leaves but exhibits limited effects on growth.

Hirose T, Aoki N, Harada Y, Okamura M, Hashida Y, Ohsugi R, Akio M, Hirochika H, Terao T.

Front Plant Sci. 2013 May 27;4:147. doi: 10.3389/fpls.2013.00147. eCollection 2013.

17.

RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation.

Toda Y, Tanaka M, Ogawa D, Kurata K, Kurotani K, Habu Y, Ando T, Sugimoto K, Mitsuda N, Katoh E, Abe K, Miyao A, Hirochika H, Hattori T, Takeda S.

Plant Cell. 2013 May;25(5):1709-25. doi: 10.1105/tpc.113.112052. Epub 2013 May 28.

18.

Collapsed abnormal pollen1 gene encoding the Arabinokinase-like protein is involved in pollen development in rice.

Ueda K, Yoshimura F, Miyao A, Hirochika H, Nonomura K, Wabiko H.

Plant Physiol. 2013 Jun;162(2):858-71. doi: 10.1104/pp.113.216523. Epub 2013 Apr 29.

19.

Reverse-genetic approach to verify physiological roles of rice phytoalexins: characterization of a knockdown mutant of OsCPS4 phytoalexin biosynthetic gene in rice.

Toyomasu T, Usui M, Sugawara C, Otomo K, Hirose Y, Miyao A, Hirochika H, Okada K, Shimizu T, Koga J, Hasegawa M, Chuba M, Kawana Y, Kuroda M, Minami E, Mitsuhashi W, Yamane H.

Physiol Plant. 2014 Jan;150(1):55-62. doi: 10.1111/ppl.12066. Epub 2013 Jun 10.

PMID:
23621683
20.

MAP kinases phosphorylate rice WRKY45.

Ueno Y, Yoshida R, Kishi-Kaboshi M, Matsushita A, Jiang CJ, Goto S, Takahashi A, Hirochika H, Takatsuji H.

Plant Signal Behav. 2013 Jun;8(6):e24510. doi: 10.4161/psb.24510. Epub 2013 Apr 9.

21.

Both OsRecQ1 and OsRDR1 are required for the production of small RNA in response to DNA-damage in rice.

Chen H, Kobayashi K, Miyao A, Hirochika H, Yamaoka N, Nishiguchi M.

PLoS One. 2013;8(1):e55252. doi: 10.1371/journal.pone.0055252. Epub 2013 Jan 30.

22.

Nonredundant regulation of rice arbuscular mycorrhizal symbiosis by two members of the phosphate transporter1 gene family.

Yang SY, Grønlund M, Jakobsen I, Grotemeyer MS, Rentsch D, Miyao A, Hirochika H, Kumar CS, Sundaresan V, Salamin N, Catausan S, Mattes N, Heuer S, Paszkowski U.

Plant Cell. 2012 Oct;24(10):4236-51. doi: 10.1105/tpc.112.104901. Epub 2012 Oct 16.

23.

Role of the rice transcription factor JAmyb in abiotic stress response.

Yokotani N, Ichikawa T, Kondou Y, Iwabuchi M, Matsui M, Hirochika H, Oda K.

J Plant Res. 2013 Jan;126(1):131-9. doi: 10.1007/s10265-012-0501-y. Epub 2012 Jul 31.

PMID:
22847900
24.

Cryptochrome and phytochrome cooperatively but independently reduce active gibberellin content in rice seedlings under light irradiation.

Hirose F, Inagaki N, Hanada A, Yamaguchi S, Kamiya Y, Miyao A, Hirochika H, Takano M.

Plant Cell Physiol. 2012 Sep;53(9):1570-82. doi: 10.1093/pcp/pcs097. Epub 2012 Jul 3.

25.

Regulation of a proteinaceous elicitor-induced Ca2+ influx and production of phytoalexins by a putative voltage-gated cation channel, OsTPC1, in cultured rice cells.

Hamada H, Kurusu T, Okuma E, Nokajima H, Kiyoduka M, Koyano T, Sugiyama Y, Okada K, Koga J, Saji H, Miyao A, Hirochika H, Yamane H, Murata Y, Kuchitsu K.

J Biol Chem. 2012 Mar 23;287(13):9931-9. doi: 10.1074/jbc.M111.337659. Epub 2012 Jan 23.

26.

Molecular spectrum of somaclonal variation in regenerated rice revealed by whole-genome sequencing.

Miyao A, Nakagome M, Ohnuma T, Yamagata H, Kanamori H, Katayose Y, Takahashi A, Matsumoto T, Hirochika H.

Plant Cell Physiol. 2012 Jan;53(1):256-64. doi: 10.1093/pcp/pcr172. Epub 2011 Dec 7.

PMID:
22156226
27.

A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance.

Asano T, Hayashi N, Kobayashi M, Aoki N, Miyao A, Mitsuhara I, Ichikawa H, Komatsu S, Hirochika H, Kikuchi S, Ohsugi R.

Plant J. 2012 Jan;69(1):26-36. doi: 10.1111/j.1365-313X.2011.04766.x. Epub 2011 Oct 10.

28.

Down-regulation of UDP-arabinopyranose mutase reduces the proportion of arabinofuranose present in rice cell walls.

Konishi T, Aohara T, Igasaki T, Hayashi N, Miyazaki Y, Takahashi A, Hirochika H, Iwai H, Satoh S, Ishii T.

Phytochemistry. 2011 Nov;72(16):1962-8. doi: 10.1016/j.phytochem.2011.07.012. Epub 2011 Aug 6.

PMID:
21824632
29.

Functional analysis of two isoforms of leaf-type ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis.

Higuchi-Takeuchi M, Ichikawa T, Kondou Y, Matsui K, Hasegawa Y, Kawashima M, Sonoike K, Mori M, Hirochika H, Matsui M.

Plant Physiol. 2011 Sep;157(1):96-108. doi: 10.1104/pp.111.181248. Epub 2011 Jul 6.

30.

RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice.

Ogawa D, Abe K, Miyao A, Kojima M, Sakakibara H, Mizutani M, Morita H, Toda Y, Hobo T, Sato Y, Hattori T, Hirochika H, Takeda S.

Nat Commun. 2011;2:278. doi: 10.1038/ncomms1279.

31.

A novel RNA-recognition-motif protein is required for premeiotic G1/S-phase transition in rice (Oryza sativa L.).

Nonomura K, Eiguchi M, Nakano M, Takashima K, Komeda N, Fukuchi S, Miyazaki S, Miyao A, Hirochika H, Kurata N.

PLoS Genet. 2011 Jan 6;7(1):e1001265. doi: 10.1371/journal.pgen.1001265.

32.

Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice.

Sato Y, Antonio B, Namiki N, Motoyama R, Sugimoto K, Takehisa H, Minami H, Kamatsuki K, Kusaba M, Hirochika H, Nagamura Y.

BMC Plant Biol. 2011 Jan 12;11:10. doi: 10.1186/1471-2229-11-10.

33.

Rice TOGO Browser: A platform to retrieve integrated information on rice functional and applied genomics.

Nagamura Y, Antonio BA, Sato Y, Miyao A, Namiki N, Yonemaru J, Minami H, Kamatsuki K, Shimura K, Shimizu Y, Hirochika H.

Plant Cell Physiol. 2011 Feb;52(2):230-7. doi: 10.1093/pcp/pcq197. Epub 2011 Jan 6.

34.

RiceFOX: a database of Arabidopsis mutant lines overexpressing rice full-length cDNA that contains a wide range of trait information to facilitate analysis of gene function.

Sakurai T, Kondou Y, Akiyama K, Kurotani A, Higuchi M, Ichikawa T, Kuroda H, Kusano M, Mori M, Saitou T, Sakakibara H, Sugano S, Suzuki M, Takahashi H, Takahashi S, Takatsuji H, Yokotani N, Yoshizumi T, Saito K, Shinozaki K, Oda K, Hirochika H, Matsui M.

Plant Cell Physiol. 2011 Feb;52(2):265-73. doi: 10.1093/pcp/pcq190. Epub 2010 Dec 23.

35.

MAMP-responsive MAPK cascades regulate phytoalexin biosynthesis.

Kishi-Kaboshi M, Takahashi A, Hirochika H.

Plant Signal Behav. 2010 Dec;5(12):1653-6. Epub 2010 Dec 1.

36.

Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice.

Asano T, Hakata M, Nakamura H, Aoki N, Komatsu S, Ichikawa H, Hirochika H, Ohsugi R.

Plant Mol Biol. 2011 Jan;75(1-2):179-91. doi: 10.1007/s11103-010-9717-1. Epub 2010 Dec 7.

PMID:
21136139
37.

Isolation, fine mapping and expression profiling of a lesion mimic genotype, spl(NF4050-8) that confers blast resistance in rice.

Babu R, Jiang CJ, Xu X, Kottapalli KR, Takatsuji H, Miyao A, Hirochika H, Kawasaki S.

Theor Appl Genet. 2011 Mar;122(4):831-54. doi: 10.1007/s00122-010-1490-7. Epub 2010 Dec 4.

PMID:
21132425
38.

Negative feedback regulation of microbe-associated molecular pattern-induced cytosolic Ca2+ transients by protein phosphorylation.

Kurusu T, Hamada H, Sugiyama Y, Yagala T, Kadota Y, Furuichi T, Hayashi T, Umemura K, Komatsu S, Miyao A, Hirochika H, Kuchitsu K.

J Plant Res. 2011 May;124(3):415-24. doi: 10.1007/s10265-010-0388-4. Epub 2010 Nov 10.

PMID:
21063744
39.

Pdk1 kinase regulates basal disease resistance through the OsOxi1-OsPti1a phosphorylation cascade in rice.

Matsui H, Miyao A, Takahashi A, Hirochika H.

Plant Cell Physiol. 2010 Dec;51(12):2082-91. doi: 10.1093/pcp/pcq167. Epub 2010 Nov 3.

PMID:
21051443
40.

RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions.

Sato Y, Antonio BA, Namiki N, Takehisa H, Minami H, Kamatsuki K, Sugimoto K, Shimizu Y, Hirochika H, Nagamura Y.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1141-8. doi: 10.1093/nar/gkq1085. Epub 2010 Nov 2.

41.

Screening for resistance against Pseudomonas syringae in rice-FOX Arabidopsis lines identified a putative receptor-like cytoplasmic kinase gene that confers resistance to major bacterial and fungal pathogens in Arabidopsis and rice.

Dubouzet JG, Maeda S, Sugano S, Ohtake M, Hayashi N, Ichikawa T, Kondou Y, Kuroda H, Horii Y, Matsui M, Oda K, Hirochika H, Takatsuji H, Mori M.

Plant Biotechnol J. 2011 May;9(4):466-85. doi: 10.1111/j.1467-7652.2010.00568.x. Epub 2010 Oct 18.

42.

A novel chloroplast protein, CEST induces tolerance to multiple environmental stresses and reduces photooxidative damage in transgenic Arabidopsis.

Yokotani N, Higuchi M, Kondou Y, Ichikawa T, Iwabuchi M, Hirochika H, Matsui M, Oda K.

J Exp Bot. 2011 Jan;62(2):557-69. doi: 10.1093/jxb/erq290. Epub 2010 Sep 27.

PMID:
20876334
43.

AGC kinase OsOxi1 positively regulates basal resistance through suppression of OsPti1a-mediated negative regulation.

Matsui H, Yamazaki M, Kishi-Kaboshi M, Takahashi A, Hirochika H.

Plant Cell Physiol. 2010 Oct;51(10):1731-44. doi: 10.1093/pcp/pcq132. Epub 2010 Aug 24.

PMID:
20739304
44.

Unique features of the rice blast resistance Pish locus revealed by large scale retrotransposon-tagging.

Takahashi A, Hayashi N, Miyao A, Hirochika H.

BMC Plant Biol. 2010 Aug 13;10:175. doi: 10.1186/1471-2229-10-175.

45.

Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected.

Hirose T, Zhang Z, Miyao A, Hirochika H, Ohsugi R, Terao T.

J Exp Bot. 2010 Aug;61(13):3639-46. doi: 10.1093/jxb/erq175. Epub 2010 Jul 5.

46.

A rice fungal MAMP-responsive MAPK cascade regulates metabolic flow to antimicrobial metabolite synthesis.

Kishi-Kaboshi M, Okada K, Kurimoto L, Murakami S, Umezawa T, Shibuya N, Yamane H, Miyao A, Takatsuji H, Takahashi A, Hirochika H.

Plant J. 2010 Aug;63(4):599-612. doi: 10.1111/j.1365-313X.2010.04264.x.

47.

Regulation of microbe-associated molecular pattern-induced hypersensitive cell death, phytoalexin production, and defense gene expression by calcineurin B-like protein-interacting protein kinases, OsCIPK14/15, in rice cultured cells.

Kurusu T, Hamada J, Nokajima H, Kitagawa Y, Kiyoduka M, Takahashi A, Hanamata S, Ohno R, Hayashi T, Okada K, Koga J, Hirochika H, Yamane H, Kuchitsu K.

Plant Physiol. 2010 Jun;153(2):678-92. doi: 10.1104/pp.109.151852. Epub 2010 Mar 31.

48.

SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice.

Asano K, Miyao A, Hirochika H, Kitano H, Matsuoka M, Ashikari M.

Proc Jpn Acad Ser B Phys Biol Sci. 2010;86(3):265-73.

49.

Derepression of the plant Chromovirus LORE1 induces germline transposition in regenerated plants.

Fukai E, Umehara Y, Sato S, Endo M, Kouchi H, Hayashi M, Stougaard J, Hirochika H.

PLoS Genet. 2010 Mar 5;6(3):e1000868. doi: 10.1371/journal.pgen.1000868.

50.

Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice.

Sugimoto K, Takeuchi Y, Ebana K, Miyao A, Hirochika H, Hara N, Ishiyama K, Kobayashi M, Ban Y, Hattori T, Yano M.

Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):5792-7. doi: 10.1073/pnas.0911965107. Epub 2010 Mar 10.

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