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Items: 23

1.

Correction: Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons.

Grond K, Perreau JM, Loo WT, Spring AJ, Cavanaugh CM, Hird SM.

PLoS One. 2019 Jul 23;14(7):e0220347. doi: 10.1371/journal.pone.0220347. eCollection 2019.

2.

Microbiomes, Community Ecology, and the Comparative Method.

Hird SM.

mSystems. 2019 May 7;4(3). pii: e00112-19. doi: 10.1128/mSystems.00112-19.

3.

Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons.

Grond K, Perreau JM, Loo WT, Spring AJ, Cavanaugh CM, Hird SM.

PLoS One. 2019 Jun 17;14(6):e0217804. doi: 10.1371/journal.pone.0217804. eCollection 2019. Erratum in: PLoS One. 2019 Jul 23;14(7):e0220347.

4.

Microbial Community Succession and Nutrient Cycling Responses following Perturbations of Experimental Saltwater Aquaria.

Bik HM, Alexiev A, Aulakh SK, Bharadwaj L, Flanagan J, Haggerty JM, Hird SM, Jospin G, Lang JM, Sauder LA, Neufeld JD, Shaver A, Sethi A, Eisen JA, Coil DA.

mSphere. 2019 Feb 20;4(1). pii: e00043-19. doi: 10.1128/mSphere.00043-19.

5.

The Cloacal Microbiome of Five Wild Duck Species Varies by Species and Influenza A Virus Infection Status.

Hird SM, Ganz H, Eisen JA, Boyce WM.

mSphere. 2018 Oct 24;3(5). pii: e00382-18. doi: 10.1128/mSphere.00382-18.

6.

Evolutionary Biology Needs Wild Microbiomes.

Hird SM.

Front Microbiol. 2017 Apr 25;8:725. doi: 10.3389/fmicb.2017.00725. eCollection 2017. Review.

7.

Community-Level Differences in the Microbiome of Healthy Wild Mallards and Those Infected by Influenza A Viruses.

Ganz HH, Doroud L, Firl AJ, Hird SM, Eisen JA, Boyce WM.

mSystems. 2017 Feb 28;2(1). pii: e00188-16. doi: 10.1128/mSystems.00188-16. eCollection 2017 Jan-Feb.

8.

Comparative Gut Microbiota of 59 Neotropical Bird Species.

Hird SM, Sánchez C, Carstens BC, Brumfield RT.

Front Microbiol. 2015 Dec 21;6:1403. doi: 10.3389/fmicb.2015.01403. eCollection 2015.

9.

Evolution of the indoor biome.

NESCent Working Group on the Evolutionary Biology of the Built Environment, Martin LJ, Adams RI, Bateman A, Bik HM, Hawks J, Hird SM, Hughes D, Kembel SW, Kinney K, Kolokotronis SO, Levy G, McClain C, Meadow JF, Medina RF, Mhuireach G, Moreau CS, Munshi-South J, Nichols LM, Palmer C, Popova L, Schal C, Täubel M, Trautwein M, Ugalde JA, Dunn RR.

Trends Ecol Evol. 2015 Apr;30(4):223-32. doi: 10.1016/j.tree.2015.02.001. Epub 2015 Mar 11. Review.

PMID:
25770744
10.

Sampling locality is more detectable than taxonomy or ecology in the gut microbiota of the brood-parasitic Brown-headed Cowbird (Molothrus ater).

Hird SM, Carstens BC, Cardiff SW, Dittmann DL, Brumfield RT.

PeerJ. 2014 Mar 20;2:e321. doi: 10.7717/peerj.321. eCollection 2014.

11.

Poor fit to the multispecies coalescent is widely detectable in empirical data.

Reid NM, Hird SM, Brown JM, Pelletier TA, McVay JD, Satler JD, Carstens BC.

Syst Biol. 2014 May;63(3):322-33. doi: 10.1093/sysbio/syt057. Epub 2013 Aug 28.

PMID:
23985785
12.

lociNGS: a lightweight alternative for assessing suitability of next-generation loci for evolutionary analysis.

Hird SM.

PLoS One. 2012;7(10):e46847. doi: 10.1371/journal.pone.0046847. Epub 2012 Oct 10.

13.

Deep phylogeographic structure and environmental differentiation in the carnivorous plant Sarracenia alata.

Zellmer AJ, Hanes MM, Hird SM, Carstens BC.

Syst Biol. 2012 Oct;61(5):763-77. doi: 10.1093/sysbio/sys048. Epub 2012 May 3.

PMID:
22556200
14.

Applications of next-generation sequencing to phylogeography and phylogenetics.

McCormack JE, Hird SM, Zellmer AJ, Carstens BC, Brumfield RT.

Mol Phylogenet Evol. 2013 Feb;66(2):526-38. doi: 10.1016/j.ympev.2011.12.007. Epub 2011 Dec 14. Review.

PMID:
22197804
15.

Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences.

McCormack JE, Maley JM, Hird SM, Derryberry EP, Graves GR, Brumfield RT.

Mol Phylogenet Evol. 2012 Jan;62(1):397-406. doi: 10.1016/j.ympev.2011.10.012. Epub 2011 Oct 31. Erratum in: Mol Phylogenet Evol. 2013 Jan;66(1):440.

PMID:
22063264
16.

PRGmatic: an efficient pipeline for collating genome-enriched second-generation sequencing data using a 'provisional-reference genome'.

Hird SM, Brumfield RT, Carstens BC.

Mol Ecol Resour. 2011 Jul;11(4):743-8. doi: 10.1111/j.1755-0998.2011.03005.x. Epub 2011 Mar 24.

PMID:
21676202
17.

Nucleotide sequence of the wheat chloroplast petB and petD genes encoding apocytochrome b-563 and subunit IV of the cytochrome bf complex.

Hird SM, Wilson RJ, Dyer TA, Gray JC.

Plant Mol Biol. 1991 Apr;16(4):745-7. No abstract available.

PMID:
1868207
19.

Nucleotide sequence of a wheat chloroplast gene encoding the proteolytic subunit of an ATP-dependent protease.

Gray JC, Hird SM, Dyer TA.

Plant Mol Biol. 1990 Dec;15(6):947-50. No abstract available.

PMID:
2103485
20.

Nucleotide sequence of the rpoA gene in wheat chloroplast DNA.

Hird SM, Dyer TA, Gray JC.

Nucleic Acids Res. 1989 Aug 11;17(15):6394. No abstract available.

21.

A photosystem II polypeptide is encoded by an open reading frame co-transcribed with genes for cytochrome b-559 in wheat chloroplast DNA.

Webber AN, Hird SM, Packman LC, Dyer TA, Gray JC.

Plant Mol Biol. 1989 Feb;12(2):141-51. doi: 10.1007/BF00020499.

PMID:
24272793
22.

The chloroplast genome and the biogenesis of the chloroplast thylakoid membrane.

Gray JC, Dunn PP, Eccles CJ, Green RM, Hird SM, Höglund AS, Webber AN, Willey DL, Dyer TA.

Biochem Soc Trans. 1988 Oct;16(5):704-6. Review. No abstract available.

PMID:
3069517
23.

Chloroplast genes for photosynthetic membrane components of higher plants.

Gray JC, Bird CR, Courtice GR, Hird SM, Howe CJ, Huttly AK, Phillips AL, Smith AG, Willey DL, Bowman CM, et al.

Biochem Soc Trans. 1986 Feb;14(1):25-7. No abstract available.

PMID:
3007236

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