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Items: 38

1.

Genomic resources for the study of echinoderm development and evolution.

Cary GA, Cameron RA, Hinman VF.

Methods Cell Biol. 2019;151:65-88. doi: 10.1016/bs.mcb.2018.11.019. Epub 2019 Jan 9. Review.

PMID:
30948032
2.

Analysis of sea star larval regeneration reveals conserved processes of whole-body regeneration across the metazoa.

Cary GA, Wolff A, Zueva O, Pattinato J, Hinman VF.

BMC Biol. 2019 Feb 22;17(1):16. doi: 10.1186/s12915-019-0633-9.

3.

EchinoBase: Tools for Echinoderm Genome Analyses.

Cary GA, Cameron RA, Hinman VF.

Methods Mol Biol. 2018;1757:349-369. doi: 10.1007/978-1-4939-7737-6_12.

PMID:
29761464
4.

Embryonic neurogenesis in echinoderms.

Hinman VF, Burke RD.

Wiley Interdiscip Rev Dev Biol. 2018 Jul;7(4):e316. doi: 10.1002/wdev.316. Epub 2018 Feb 22. Review.

PMID:
29470839
5.

Genome-wide use of high- and low-affinity Tbrain transcription factor binding sites during echinoderm development.

Cary GA, Cheatle Jarvela AM, Francolini RD, Hinman VF.

Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):5854-5861. doi: 10.1073/pnas.1610611114.

6.

Paleogenomics of echinoids reveals an ancient origin for the double-negative specification of micromeres in sea urchins.

Thompson JR, Erkenbrack EM, Hinman VF, McCauley BS, Petsios E, Bottjer DJ.

Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):5870-5877. doi: 10.1073/pnas.1610603114.

7.

Echinoderm development and evolution in the post-genomic era.

Cary GA, Hinman VF.

Dev Biol. 2017 Jul 15;427(2):203-211. doi: 10.1016/j.ydbio.2017.02.003. Epub 2017 Feb 7. Review.

8.

A gene regulatory network for apical organ neurogenesis and its spatial control in sea star embryos.

Cheatle Jarvela AM, Yankura KA, Hinman VF.

Development. 2016 Nov 15;143(22):4214-4223. Epub 2016 Oct 5.

9.

Unraveling the Tangled Skein: The Evolution of Transcriptional Regulatory Networks in Development.

Rebeiz M, Patel NH, Hinman VF.

Annu Rev Genomics Hum Genet. 2015;16:103-31. doi: 10.1146/annurev-genom-091212-153423. Epub 2015 May 20. Review.

10.

Evolution of transcription factor function as a mechanism for changing metazoan developmental gene regulatory networks.

Cheatle Jarvela AM, Hinman VF.

Evodevo. 2015 Jan 29;6(1):3. doi: 10.1186/2041-9139-6-3. eCollection 2015. Review.

11.

Dose-dependent nuclear β-catenin response segregates endomesoderm along the sea star primary axis.

McCauley BS, Akyar E, Saad HR, Hinman VF.

Development. 2015 Jan 1;142(1):207-17. doi: 10.1242/dev.113043.

12.

Modular evolution of DNA-binding preference of a Tbrain transcription factor provides a mechanism for modifying gene regulatory networks.

Cheatle Jarvela AM, Brubaker L, Vedenko A, Gupta A, Armitage BA, Bulyk ML, Hinman VF.

Mol Biol Evol. 2014 Oct;31(10):2672-88. doi: 10.1093/molbev/msu213. Epub 2014 Jul 12.

13.

Developmental gene regulatory network evolution: insights from comparative studies in echinoderms.

Hinman VF, Cheatle Jarvela AM.

Genesis. 2014 Mar;52(3):193-207. doi: 10.1002/dvg.22757. Epub 2014 Mar 6. Review.

PMID:
24549884
14.

Expression of wnt and frizzled genes during early sea star development.

McCauley BS, Akyar E, Filliger L, Hinman VF.

Gene Expr Patterns. 2013 Dec;13(8):437-44. doi: 10.1016/j.gep.2013.07.007. Epub 2013 Jul 27.

PMID:
23899422
15.

Gene regulatory network for neurogenesis in a sea star embryo connects broad neural specification and localized patterning.

Yankura KA, Koechlein CS, Cryan AF, Cheatle A, Hinman VF.

Proc Natl Acad Sci U S A. 2013 May 21;110(21):8591-6. doi: 10.1073/pnas.1220903110. Epub 2013 May 6.

16.

Probabilistic error correction for RNA sequencing.

Le HS, Schulz MH, McCauley BM, Hinman VF, Bar-Joseph Z.

Nucleic Acids Res. 2013 May 1;41(10):e109. doi: 10.1093/nar/gkt215. Epub 2013 Apr 4.

17.
18.

RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star.

Kadri S, Hinman VF, Benos PV.

PLoS One. 2011;6(12):e29217. doi: 10.1371/journal.pone.0029217. Epub 2011 Dec 28.

19.

Uncoupling of complex regulatory patterning during evolution of larval development in echinoderms.

Yankura KA, Martik ML, Jennings CK, Hinman VF.

BMC Biol. 2010 Nov 30;8:143. doi: 10.1186/1741-7007-8-143.

20.

A conserved gene regulatory network subcircuit drives different developmental fates in the vegetal pole of highly divergent echinoderm embryos.

McCauley BS, Weideman EP, Hinman VF.

Dev Biol. 2010 Apr 15;340(2):200-8. doi: 10.1016/j.ydbio.2009.11.020. Epub 2009 Nov 23.

21.

Evolution of gene regulatory network architectures: examples of subcircuit conservation and plasticity between classes of echinoderms.

Hinman VF, Yankura KA, McCauley BS.

Biochim Biophys Acta. 2009 Apr;1789(4):326-32. doi: 10.1016/j.bbagrm.2009.01.004. Epub 2009 Jan 22. Review.

PMID:
19284985
22.

Evolutionary plasticity of developmental gene regulatory network architecture.

Hinman VF, Davidson EH.

Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19404-9. Epub 2007 Nov 27.

23.
24.

Developmental expression of transcription factor genes in a demosponge: insights into the origin of metazoan multicellularity.

Larroux C, Fahey B, Liubicich D, Hinman VF, Gauthier M, Gongora M, Green K, Wörheide G, Leys SP, Degnan BM.

Evol Dev. 2006 Mar-Apr;8(2):150-73.

PMID:
16509894
25.
26.

Developmental gene regulatory network architecture across 500 million years of echinoderm evolution.

Hinman VF, Nguyen AT, Cameron RA, Davidson EH.

Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13356-61. Epub 2003 Oct 31.

28.

Expression of anterior Hox genes during larval development of the gastropod Haliotis asinina.

Hinman VF, O'Brien EK, Richards GS, Degnan BM.

Evol Dev. 2003 Sep-Oct;5(5):508-21.

PMID:
12950629
29.
30.
31.

Evolution and developmental expression of nuclear receptor genes in the ascidian Herdmania.

Devine C, Hinman VF, Degnan BM.

Int J Dev Biol. 2002;46(4):687-92.

32.

Ecological regulation of development: induction of marine invertebrate metamorphosis.

Jackson D, Leys SP, Hinman VF, Woods R, Lavin MF, Degnan BM.

Int J Dev Biol. 2002;46(4):679-86. Review.

33.
34.

Expression of a Scr/Hox5 gene in the larval central nervous system of the gastropod Haliotis, a non-segmented spiralian lophotrochozoan.

Giusti AF, Hinman VF, Degnan SM, Degnan BM, Morse DE.

Evol Dev. 2000 Sep-Oct;2(5):294-302.

PMID:
11252558
35.

Neuroectodermal and endodermal expression of the ascidian Cdx gene is separated by metamorphosis.

Hinman VF, Becker E, Degnan BM.

Dev Genes Evol. 2000 Apr;210(4):212-6.

PMID:
11180824
36.

Retinoic acid perturbs Otx gene expression in the ascidian pharynx.

Hinman VF, Degnan BM.

Dev Genes Evol. 2000 Mar;210(3):129-39.

PMID:
11180813
37.

Hemps, a novel EGF-like protein, plays a central role in ascidian metamorphosis.

Eri R, Arnold JM, Hinman VF, Green KM, Jones MK, Degnan BM, Lavin MF.

Development. 1999 Dec;126(24):5809-18.

38.

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